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Diversity, Phylogeny, Characterization and Diagnostics of Root-Knot and Lesion Nematodes
Diversity, phylogeny, characterization and diagnostics of root-knot and lesion nematodes Toon Janssen Promotors: Prof. Dr. Wim Bert Prof. Dr. Gerrit Karssen Thesis submitted to obtain the degree of doctor in Sciences, Biology Proefschrift voorgelegd tot het bekomen van de graad van doctor in de Wetenschappen, Biologie 1 Table of contents Acknowledgements Chapter 1: general introduction 1 Organisms under study: plant-parasitic nematodes .................................................... 11 1.1 Pratylenchus: root-lesion nematodes ..................................................................................... 13 1.2 Meloidogyne: root-knot nematodes ....................................................................................... 15 2 Economic importance ..................................................................................................... 17 3 Identification of plant-parasitic nematodes .................................................................. 19 4 Variability in reproduction strategies and genome evolution ..................................... 22 5 Aims .................................................................................................................................. 24 6 Outline of this study ........................................................................................................ 25 Chapter 2: Mitochondrial coding genome analysis of tropical root-knot nematodes (Meloidogyne) supports haplotype based diagnostics and reveals evidence of recent reticulate evolution. 1 Abstract -
Insect Pathogens As Biological Control Agents: Back to the Future ⇑ L.A
Journal of Invertebrate Pathology 132 (2015) 1–41 Contents lists available at ScienceDirect Journal of Invertebrate Pathology journal homepage: www.elsevier.com/locate/jip Insect pathogens as biological control agents: Back to the future ⇑ L.A. Lacey a, , D. Grzywacz b, D.I. Shapiro-Ilan c, R. Frutos d, M. Brownbridge e, M.S. Goettel f a IP Consulting International, Yakima, WA, USA b Agriculture Health and Environment Department, Natural Resources Institute, University of Greenwich, Chatham Maritime, Kent ME4 4TB, UK c U.S. Department of Agriculture, Agricultural Research Service, 21 Dunbar Rd., Byron, GA 31008, USA d University of Montpellier 2, UMR 5236 Centre d’Etudes des agents Pathogènes et Biotechnologies pour la Santé (CPBS), UM1-UM2-CNRS, 1919 Route de Mendes, Montpellier, France e Vineland Research and Innovation Centre, 4890 Victoria Avenue North, Box 4000, Vineland Station, Ontario L0R 2E0, Canada f Agriculture and Agri-Food Canada, Lethbridge Research Centre, Lethbridge, Alberta, Canada1 article info abstract Article history: The development and use of entomopathogens as classical, conservation and augmentative biological Received 24 March 2015 control agents have included a number of successes and some setbacks in the past 15 years. In this forum Accepted 17 July 2015 paper we present current information on development, use and future directions of insect-specific Available online 27 July 2015 viruses, bacteria, fungi and nematodes as components of integrated pest management strategies for con- trol of arthropod pests of crops, forests, urban habitats, and insects of medical and veterinary importance. Keywords: Insect pathogenic viruses are a fruitful source of microbial control agents (MCAs), particularly for the con- Microbial control trol of lepidopteran pests. -
Reproduction and Identification of Root-Knot Nematodes on Perennial Ornamental Plants in Florida
REPRODUCTION AND IDENTIFICATION OF ROOT-KNOT NEMATODES ON PERENNIAL ORNAMENTAL PLANTS IN FLORIDA By ROI LEVIN A THESIS PRESENTED TO THE GRADUATE SCHOOL OF THE UNIVERSITY OF FLORIDA IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE UNIVERSITY OF FLORIDA 2005 Copyright 2005 by Roi Levin ACKNOWLEDGMENTS I would like to thank my chair, Dr. W. T. Crow, and my committee members, Dr. J. A. Brito, Dr. R. K. Schoellhorn, and Dr. A. F. Wysocki, for their guidance and support of this work. I am honored to have worked under their supervision and commend them for their efforts and contributions to their respective fields. I would also like to thank my parents. Through my childhood and adult years, they have continuously encouraged me to pursue my interests and dreams, and, under their guidance, gave me the freedom to steer opportunities, curiosities, and decisions as I saw fit. Most of all, I would like to thank my fiancée, Melissa A. Weichert. Over the past few years, she has supported, encouraged, and loved me, through good times and bad. I will always remember her dedication, patience, and sacrifice while I was working on this study. I would not be the person I am today without our relationship and love. iii TABLE OF CONTENTS page ACKNOWLEDGMENTS ................................................................................................. iii LIST OF TABLES............................................................................................................. vi LIST OF FIGURES .......................................................................................................... -
Symposium Abstracts
Nematology,2002,V ol.4(2), 123-314 Symposium abstracts 001 Bursaphelenchusxylophilus and B.mucronatus untilthe recent identi cation in Portugal. It is felt that if inJapan: where arethey from? introducedthe nematode would establish populations or interbreedwith endemic non-virulent species. This ban 1; 2 Hideaki IWAHORI ¤, Natsumi KANZAKI and hashadmajorconsequences on theNorth American forest 2 Kazuyoshi FUTAI industry.Recently many new species of Bursaphelenchus 1NationalAgricultural Research Center for Kyushu Okinawa havebeen described from deador dyingpines throughout Region,Nishigoushi, Kumamoto 861-1192, Japan Europe.Because morphological characters are limited 2 KyotoUniversity, Kyoto 606-8502, Japan inusefulness for speciesdescriptions and cannot be ¤[email protected] usedto differentiate populations, molecular taxonomy hasbecome important. W ewilllook at the accuracy Geographicaldistribution and speciation of Bursaphelen- ofmethods used for speciesidenti cation and at what chusxylophilus (pinewoodnematode) and B. mucrona- criteriamight be used to de ne and differentiate species tus were inferredfrom molecularphylogenetic analysis of Bursaphelenchus whenconsidering import and export andchromosomal number .Severalisolates of B. xylop- bans. hilus and B.mucronatus inJapan and from someother countrieswere usedfor DNA sequencingof the ITS re- 003Mitigating the pinewoodnematode and its gionsin ribosomalDNA. Publishedresearch on thenum- vectorsin transported coniferous wood berof chromosomesof selectedisolates was usedto iden- tifya -
Nematodes of Agricultural Importance in North and South Carolina
Chapter 10 Nematodes of Agricultural Importance in North and South Carolina Weimin Ye 10.1 Introduction North Carolina’s agricultural industry including food, fiber, ornamentals and for- estry, contributes $84 billion to the state’s annual economy, accounts for more than 17% of the state’s income, and employs 17% of the work force. North Carolina is one of the most diversified agricultural states in the nation. Approximately, 50,000 farmers grow over 80 different commodities in North Carolina utilizing 8.2 million of the state 12.5 million hectares to furnish consumers a dependable and affordable supply of food and fiber. North Carolina produces more tobacco and sweet potatoes than any other state, ranks second in Christmas tree and third in tomato production. The state ranks nineth nationally in farm cash receipts of over $10.8 billion (NCDA Agricultural Statistics 2017). Plant parasitic nematodes are recognized as one of the greatest threat to crops throughout the world. Nematodes alone or in combination with other soil microor- ganisms have been found to attack almost every part of the plant including roots, stems, leaves, fruits and seeds. Crop damage caused worldwide by plant nematodes has been estimated at $US80 billion per year (Nicol et al. 2011). All crops are dam- aged by at least one species of nematode. Most plant parasitic nematodes live in soil and damage plants by feeding in large numbers on roots impairing the plant’s ability to take up water and nutrients. Severe root damage caused by nematodes typically results in aboveground symptoms that may include stunting, yellowing of leaves, incipient wilt, loss of plant vigor and/or an overall general decline in plant perfor- mance. -
Molecular Characterization of Root-Knot Nematodes
www.nature.com/scientificreports OPEN Molecular characterization of root- knot nematodes (Meloidogyne spp.) from Arkansas, USA Weimin Ye1*, Robert Thomas Robbins2 & Terry Kirkpatrick2 Root-knot nematodes (Meloidogyne spp.) are the most common major pathogens of many crops throughout the world, impacting both the quantity and quality of marketable yields. In this study, a total of 244 root-knot nematode populations from various hosts from 39 counties in Arkansas were tested to determine the species diversity. Molecular characterization was performed on these populations by DNA sequencing of the ribosomal DNA 18S-ITS-5.8S, 28S D2/D3 and a mitochondrial DNA fragment fanking cytochrome oxidase gene subunit II - the intergenic spacer. Five species were identifed, including M. incognita (Kofoid & White, 1919) Chitwood, 1949 from soybean, cotton, corn and various vegetables (232 samples); M. hapla Chitwood, 1949 from rose (1 sample); M. haplanaria Eisenback, Bernard, Starr, Lee & Tomaszewski, 2003 from okra, tomato, peanut, Indian hawthorn, ash, willow and elm trees (7 samples); M. marylandi Jepson & Golden in Jepson, 1987 from grasses (3 samples); and M. partityla Kleynhans, 1986 from pecan (1 sample) through a combined analysis of DNA sequencing and PCR by species-specifc primers. Meloidogyne incognita is the most abundant species that was identifed in 95% samples and was the only species in feld crops including soybean and cotton, except for one population of M. haplanaria from soybean in Logan County (TK201). Species-specifc primers were used to verify M. incognita through PCR by species-specifc primers. Unlike historical data, M. arenaria, M. javanica and M. graminis were not detected from any of the samples collected during this study. -
Biology, Taxonomy, and Management of the Root-Knot Nematode (Meloidogyne Incognita) in Sweet Potato
Hindawi Advances in Agriculture Volume 2021, Article ID 8820211, 13 pages https://doi.org/10.1155/2021/8820211 Review Article Biology, Taxonomy, and Management of the Root-Knot Nematode (Meloidogyne incognita) in Sweet Potato Gebissa Yigezu Wendimu Haramaya University, College of Agriculture and Environmental Sciences, School of Plant Sciences, Dire Dawa, Ethiopia Correspondence should be addressed to Gebissa Yigezu Wendimu; [email protected] Received 19 August 2020; Revised 17 April 2021; Accepted 20 May 2021; Published 25 June 2021 Academic Editor: Jiban Shrestha Copyright © 2021 Gebissa Yigezu Wendimu. )is is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Sweet potato is the seventh-ranked food crop produced after wheat, rice, maize, potato, barley, and cassava in the world. It is the most important root tuber crop in temperate, subtropical, and tropical areas of the world. It is grown for food, income-generating, and jobs for farmers and retailers. )e important nutritional substances of sweet potatoes are ß-carotene and anthocyanins. However, the production and its valuable products are limited due to root-knot nematode parasitism. One of the most important destructive species of root-knot nematode to this crop is Meloidogyne incognita. )e most destructive stage to sweet potato is at its second juvenile stage (J2). At this stage, it invades the roots and tubers of sweet potato highly in warm sandy soil conditions. It is an obligate plant-parasitic nematode. M. incognita caused significant yield loss to sweet potato in terms of quality, quantity, disturbing the process of photosynthesis and nutrient uptake through the formation of galling, establishing of its feeding sites, or induced galls that contain giant-feeding cells, and cracking of tubers and roots directly. -
Universidad Nacional Agraria La Molina
UNIVERSIDAD NACIONAL AGRARIA LA MOLINA ESCUELA DE POSTGRADO MAESTRÍA EN FITOPATOLOGÍA “TÉCNICA MOLECULAR DE PCR PARA IDENTIFICAR LAS PRINCIPALES ESPECIES DE Meloidogyne spp. EN POBLACIONES PROVENIENTES DE PERÚ” Presentado por: NORA YESSENIA VERA OBANDO TESIS PARA OPTAR EL GRADO DE MAGISTER SCIENTIAE EN FITOPATOLOGÍA Lima-Perú 2014 DEDICATORIA A mi madre Nora, por su amor, cariño y apoyo incondicional a lo largo de mi vida, por motivarme a seguir adelante y no dejarme caer cuando sentía que el camino se terminaba. A mi padre Wilfredo, por su cariño, palabras de aliento y confianza depositada en mí y por recordarme que siempre lo tendré a mi lado para brindarme su apoyo. A mis hermanos Hernán, Frank y cuñada Marina por su cariño y apoyo, por preocuparse por su hermana menor y tenerlos siempre conmigo en mi corazón en cualquier lugar donde me encuentre. A mi sobrina y ahijada Anabelén, por su existencia, por llenar nuestras vidas con su cariño, alegría y esperanza y por motivarnos a ser ejemplo de personas de bien. AGRADECIMIENTO A Dios, por acompañarme y guiarme a lo largo de mi vida, darme fortaleza y fe en cada una de las acciones que realizo y brindarme una vida llena de aprendizaje. Al Consejo Nacional de Ciencia, Tecnología e Innovación Tecnológica (CONCYTEC), por el financiamiento de mis estudios de maestría y presente trabajo de tesis, quienes de esta manera permitieron la realización del anhelo de superación académica y profesional de mi persona. Al Dr. Manuel Canto Sáenz, asesor de la presente tesis, mi más profundo agradecimiento, por su relevante orientación y aporte durante el desarrollo del presente trabajo, así como su indispensable apoyo en la culminación del mismo. -
3 Taxonomy, Identification and Principal Species
3 Taxonomy, Identification and Principal Species David J. Hunt1 and Zafar A. Handoo2 1CABI Europe-UK, Egham, Surrey, UK; 2USDA, ARS, BARC-West, Beltsville, Maryland, USA 3.1 Introduction 55 3.2 Systematic Position 61 3.3 Subfamily and Genus Diagnosis 61 3.4 List of Species and Synonyms 63 3.5 Identification 67 3.6 Principal Species 72 3.7 Conclusions and Future Directions 88 3.8 Acknowledgements 88 3.9 References 88 3.1 Introduction within the galls and recorded the presence of ‘Vibrio’: 3.1.1 History It appeared that these cysts were regular mem- branous sacs, exactly resembling the sporangia ‘On closer examination the root was found to of Truffles, and filled with a multitude of be covered with excrescences varying from the minute elliptic or slightly cymbiform eggs, size of a small pin’s head to that of a little Bean averaging not more than 1/250th of an inch in or Nutmeg.’ This observation, from one of the length with a breadth of 1/600th. In many of first accounts of root-knot nematodes on plants, these the nucleus already showed the form of a was made by Berkeley (1855), an eminent Vibrio, folded up once or twice, and several of the animals were free, though still of small size, Victorian scientist, on publishing his discovery having escaped from the eggs by a little circu- of galls produced by nematodes on the roots of lar aperture at one extremity. cucumbers growing in a garden frame at Nuneham, England. Miles Joseph Berkeley FRS Berkeley illustrated his account with two rather (1803–1889), an ordained minister, expert nice drawings showing the symptoms on the roots draughtsman and pioneering zoologist, plant and a section through one of the galls (Fig. -
Facultad De Ciencias Agrarias Escuela De Agronomía Efecto Nematicida Sobre Meloidogyne Hapla Chitwood 1949, Del Tejido Foliar De Especies Arbóreas
Universidad Austral de Chile Facultad de Ciencias Agrarias Escuela de Agronomía Efecto nematicida sobre Meloidogyne hapla Chitwood 1949, del tejido foliar de especies arbóreas. Memoria presentada como parte de los requisitos para optar al título de Ingeniero Agrónomo Macarena Paz Subercaseaux Iglesias Valdivia – Chile 2011 PROFESOR PATROCINANTE: ____________________________________ Laura Böhm S. Ing. Agr. Instituto de Producción y Sanidad Vegetal PROFESORES INFORMANTES: ____________________________________ Maritza Reyes C. Ing. Agr. M Sc. Dr. Cs. Ag. Instituto de Producción y Sanidad Vegetal ___________________________________ Miguel Neira C. Ing. Agr. Instituto de Producción y Sanidad Vegetal i INDICE DE MATERIAS Capítulo Página RESUMEN 1 SUMMARY 2 1 INTRODUCCIÓN 3 2 REVISIÓN BIBLIOGRÁFICA 5 2.1 Características generales de los nemátodos 5 2.1.1 Distribución del Phylum Nematoda 6 2.1.2 Clasificación 6 2.1.3 Nemátodo del nudo de la raíz Meloidogyne hapla Chitwood, 1949 7 2.1.4 Clasificación taxonómica de M. hapla 8 2.1.5 Biología y ciclo de vida de M. hapla 8 2.2. Relación patógeno hospedero 9 2.3 Efectos y daños de M. hapla en plantas 10 2.4 Control de nemátodos 11 2.4.1 Control biológico 12 2.4.1.1 Uso de plantas antagonistas 13 2.5 Propiedades y características de las especies vegetales en estudio 15 ii 2.5.1 Arrayán (Luma apiculata) 15 2.5.2 Avellano (Gevuina avellana) 16 2.5.3 Matico (Buddleja globosa) 16 2.5.4 Eucalipto (Eucalyptus globulus) 16 2.5. Maitén (Maytenus boaria) 16 2.5.6 Murta o murtilla (Ugni molinae) 17 3 MATERIAL Y MÉTODO 18 3.1 Materiales 18 3.1.1 Material vegetal 18 3.1.2 Material de laboratorio 18 3.1.3 Equipamiento 18 3.1.4 Reactivos 18 3.1.5 Sustrato 18 3.1.6 Inóculo de M. -
JOURNAL of NEMATOLOGY Discovery and Identification of Meloidogyne Species Using COI DNA Barcoding
JOURNAL OF NEMATOLOGY Article | DOI: 10.21307/jofnem-2018-029 Issue 3 | Vol. 50 (2018) Discovery and Identification of Meloidogyne Species Using COI DNA Barcoding Thomas Powers*, Timothy Harris, Rebecca Higgins, Peter Mullin, and Kirsten Powers Abstract Department of Plant Pathology, DNA barcoding with a new cytochrome oxidase c subunit 1 primer University of Nebraska-Lincoln, set generated a 721 to 724 bp fragment used for the identification Lincoln, NE 68583-0722. of 322 Meloidogyne specimens, including 205 new sequences combined with 117 from GenBank. A maximum likelihood analysis *E-mail: [email protected]. grouped the specimens into 19 well-supported clades and four This paper was edited by Zafar single-specimen lineages. The “major” tropical apomictic species Ahmad Handoo. (Meloidogyne arenaria, Meloidogyne incognita, Meloidogyne javanica) were not discriminated by this barcode although some closely related Received for publication March 2, species such as Meloidogyne konaensis were characterized by fixed 2018. diagnostic nucleotides. Species that were collected from multiple localities and strongly characterized as discrete lineages or species include Meloidogyne enterolobii, Meloidogyne partityla, Meloidogyne hapla, Meloidogyne graminicola, Meloidogyne naasi, Meloidogyne chitwoodi, and Meloidogyne fallax. Seven unnamed groups illustrate the limitations of DNA barcoding without the benefit of a well- populated reference library. The addition of these DNA sequences to GenBank and the Barcode of Life Database (BOLD) should stimulate and facilitate root-knot nematode identification and provide a first step in new species discovery. Key words COI, DNA barcoding, Meloidogyne, Plant parasitic nematodes, Root-knot nematodes, Taxonomy. The term DNA-barcoding has multiple definitions. oxidase subunit 1 mitochondrial gene. The goal of this The earliest mention of barcoding in nematology was conceptual paper was the development of a global in 1998 by Dr Mark Blaxter, then of Edinburgh Uni- bioidentification system for animals. -
Communautés De Nématodes Phytoparasites Associés À L'olivier
Communautés de nématodes phytoparasites associés à l’olivier : réponse aux forçages anthropiques et environnementaux Nadine Ali To cite this version: Nadine Ali. Communautés de nématodes phytoparasites associés à l’olivier : réponse aux forçages anthropiques et environnementaux. Sciences agricoles. Montpellier SupAgro, 2015. Français. NNT : 2015NSAM0015. tel-01398778 HAL Id: tel-01398778 https://tel.archives-ouvertes.fr/tel-01398778 Submitted on 17 Nov 2016 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Délivré par Centre international d’études supérieures en sciences agronomiques de Montpellier (SUPAGRO) Préparée au sein de l’école doctorale Systèmes Intégrés en Biologie, Agronomie, Géosciences, Hydrosciences, Environnement (SIBAGHE) et de l’unité de recherche Centre de biologie pour la gestion des populations (CBGP) Spécialité : Écologie, Evolution, Ressources Génétique, Paléobiologie (EERGP) Direction de thèse : Thierry MATEILLE , DR IRD Co-encadrement : Elodie CHAPUIS , CR IRD Présentée par Nadine ALI Communautés de nématodes phytoparasites