Basic Functional Neuroanatomy
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The Creation of Neuroscience
The Creation of Neuroscience The Society for Neuroscience and the Quest for Disciplinary Unity 1969-1995 Introduction rom the molecular biology of a single neuron to the breathtakingly complex circuitry of the entire human nervous system, our understanding of the brain and how it works has undergone radical F changes over the past century. These advances have brought us tantalizingly closer to genu- inely mechanistic and scientifically rigorous explanations of how the brain’s roughly 100 billion neurons, interacting through trillions of synaptic connections, function both as single units and as larger ensem- bles. The professional field of neuroscience, in keeping pace with these important scientific develop- ments, has dramatically reshaped the organization of biological sciences across the globe over the last 50 years. Much like physics during its dominant era in the 1950s and 1960s, neuroscience has become the leading scientific discipline with regard to funding, numbers of scientists, and numbers of trainees. Furthermore, neuroscience as fact, explanation, and myth has just as dramatically redrawn our cultural landscape and redefined how Western popular culture understands who we are as individuals. In the 1950s, especially in the United States, Freud and his successors stood at the center of all cultural expla- nations for psychological suffering. In the new millennium, we perceive such suffering as erupting no longer from a repressed unconscious but, instead, from a pathophysiology rooted in and caused by brain abnormalities and dysfunctions. Indeed, the normal as well as the pathological have become thoroughly neurobiological in the last several decades. In the process, entirely new vistas have opened up in fields ranging from neuroeconomics and neurophilosophy to consumer products, as exemplified by an entire line of soft drinks advertised as offering “neuro” benefits. -
The Baseline Structure of the Enteric Nervous System and Its Role in Parkinson’S Disease
life Review The Baseline Structure of the Enteric Nervous System and Its Role in Parkinson’s Disease Gianfranco Natale 1,2,* , Larisa Ryskalin 1 , Gabriele Morucci 1 , Gloria Lazzeri 1, Alessandro Frati 3,4 and Francesco Fornai 1,4 1 Department of Translational Research and New Technologies in Medicine and Surgery, University of Pisa, 56126 Pisa, Italy; [email protected] (L.R.); [email protected] (G.M.); [email protected] (G.L.); [email protected] (F.F.) 2 Museum of Human Anatomy “Filippo Civinini”, University of Pisa, 56126 Pisa, Italy 3 Neurosurgery Division, Human Neurosciences Department, Sapienza University of Rome, 00135 Rome, Italy; [email protected] 4 Istituto di Ricovero e Cura a Carattere Scientifico (I.R.C.C.S.) Neuromed, 86077 Pozzilli, Italy * Correspondence: [email protected] Abstract: The gastrointestinal (GI) tract is provided with a peculiar nervous network, known as the enteric nervous system (ENS), which is dedicated to the fine control of digestive functions. This forms a complex network, which includes several types of neurons, as well as glial cells. Despite extensive studies, a comprehensive classification of these neurons is still lacking. The complexity of ENS is magnified by a multiple control of the central nervous system, and bidirectional communication between various central nervous areas and the gut occurs. This lends substance to the complexity of the microbiota–gut–brain axis, which represents the network governing homeostasis through nervous, endocrine, immune, and metabolic pathways. The present manuscript is dedicated to Citation: Natale, G.; Ryskalin, L.; identifying various neuronal cytotypes belonging to ENS in baseline conditions. -
A Revised Computational Neuroanatomy for Motor Control
This is the author’s final version; this article has been accepted for publication in the Journal of Cognitive Neuroscience 1 A Revised Computational Neuroanatomy for Motor Control 2 Shlomi Haar1, Opher Donchin2,3 3 1. Department of BioEngineering, Imperial College London, UK 4 2. Department of Biomedical Engineering, Ben-Gurion University of the Negev, Israel 5 3. Zlotowski Center for Neuroscience, Ben-Gurion University of the Negev, Israel 6 7 Corresponding author: Shlomi Haar ([email protected]) 8 Imperial College London, London, SW7 2AZ, UK 9 10 Acknowledgements: We would like to thank Ilan Dinstein, Liad Mudrik, Daniel Glaser, Alex Gail, and 11 Reza Shadmehr for helpful discussions about the manuscript. Shlomi Haar is supported by the Royal 12 Society – Kohn International Fellowship (NF170650). Work on this review was partially supported by 13 DFG grant TI-239/16-1. 14 15 Abstract 16 We discuss a new framework for understanding the structure of motor control. Our approach 17 integrates existing models of motor control with the reality of hierarchical cortical processing and the 18 parallel segregated loops that characterize cortical-subcortical connections. We also incorporate the recent 19 claim that cortex functions via predictive representation and optimal information utilization. Our 20 framework assumes each cortical area engaged in motor control generates a predictive model of a different 21 aspect of motor behavior. In maintaining these predictive models, each area interacts with a different part 22 of the cerebellum and basal ganglia. These subcortical areas are thus engaged in domain appropriate 23 system identification and optimization. This refocuses the question of division of function among different 24 cortical areas. -
An Illustrated Guide to Human Neuroematomy
f:N-i,4I}TIA I APPENDIX INTRODUCTION SURFACEANATOMY OF THE BRAIN An Illustrated THE LATERALSURFACE OFTHE BRAIN /o) CrossFeotures Guide to Human (b) SelectedGyri,Sulci, ond Fissures Neuroematomy (c) CerebrolLobes ond the Insulo (d) Mojor Sensory,Motor, ond AssociotionAreos of Cortex THE MEDIALSURFACE OF THE BRAIN FT & (o) BroinStem Structures (b) ForebroinStructures (c) Ventricles THEVENTRALSURFACE OF THE BRAIN THE DORSALSURFACE OFTHE BRAIN (o) Cerebrum (b) CerebrumRernoved (c) Cerebrumond CerebellumRemoved CROSS.SECTIONALANATOMY OF THE BRAIN CROSSSECTION | : FOREBRAINAT THALAMUS-TELENCEPHALON JUNCTION (o) GrossFeotures (b) SelectedCell ond FiberGroups CROSSSECTION 2: FOREBRAINAT MID-THALAMUS (o) GrossFeotures (b) SelectedCell ond FiberGroups CROSSSECTION 3: FOREBRAINATTHALAMUS-MIDBRAIN JUNCTION (o) GrossFeotures (b) Se/eaedCell ond FiberGrouPs CROSSSECTION 4: ROSTRALMIDBRAIN CROSSSECTION 5: CAUDALMIDBRAIN CROSSSECTION 6: PONSAND CEREBELLUM CROSSSECTION 7: ROSTRALMEDULLA CROSSSECTION 8: MID-MEDULLA CROSSSECTION 9: MEDULLA-SPINALCORD JUNCTION THESPINAL CORD THE DORSALSURFACE OF THE SPINAL CORD AND SPINALNERVES THE VENTRAL-LATERAL SURFACE CROSS-SECTIONALANATOMY THEAUTONOMIC NERVOUS SYSTEM THECRANIAL NERVES THEBLOOD SUPPLY OF THE BRAIN VENTRALVIEW LATERALVIEW MEDTALVTEW(BRA|N STEM REMOVED) SELF.QUIZ j:' :: \) fi:; "i'- ,1,.., 206 C HAPTE R 7 . APPENDIX:ANILLUSTRATED GUIDETO HUMAN NEUROANATOMY W INTRODUCTION As we will see in the remainder of the book, a fruitful way to explore the nervous system is to divide it up into functional systems. Thus, the otfac- tlry systemconsists of those parts of the brain that are devoted to the sense of smell, the visual systemincludes those parts that are devoted to vision, and so on. while this functional approach to investigatingnervous sys- "big tem structure has many merits, it can make the picture,,-how all these systemsfit rogether inside the box we call the brain-difficult ro see. -
Basal Ganglia & Cerebellum
1/2/2019 This power point is made available as an educational resource or study aid for your use only. This presentation may not be duplicated for others and should not be redistributed or posted anywhere on the internet or on any personal websites. Your use of this resource is with the acknowledgment and acceptance of those restrictions. Basal Ganglia & Cerebellum – a quick overview MHD-Neuroanatomy – Neuroscience Block Gregory Gruener, MD, MBA, MHPE Vice Dean for Education, SSOM Professor, Department of Neurology LUHS a member of Trinity Health Outcomes you want to accomplish Basal ganglia review Define and identify the major divisions of the basal ganglia List the major basal ganglia functional loops and roles List the components of the basal ganglia functional “circuitry” and associated neurotransmitters Describe the direct and indirect motor pathways and relevance/role of the substantia nigra compacta 1 1/2/2019 Basal Ganglia Terminology Striatum Caudate nucleus Nucleus accumbens Putamen Globus pallidus (pallidum) internal segment (GPi) external segment (GPe) Subthalamic nucleus Substantia nigra compact part (SNc) reticular part (SNr) Basal ganglia “circuitry” • BG have no major outputs to LMNs – Influence LMNs via the cerebral cortex • Input to striatum from cortex is excitatory – Glutamate is the neurotransmitter • Principal output from BG is via GPi + SNr – Output to thalamus, GABA is the neurotransmitter • Thalamocortical projections are excitatory – Concerned with motor “intention” • Balance of excitatory & inhibitory inputs to striatum, determine whether thalamus is suppressed BG circuits are parallel loops • Motor loop – Concerned with learned movements • Cognitive loop – Concerned with motor “intention” • Limbic loop – Emotional aspects of movements • Oculomotor loop – Concerned with voluntary saccades (fast eye-movements) 2 1/2/2019 Basal ganglia “circuitry” Cortex Striatum Thalamus GPi + SNr Nolte. -
Basic Brain Anatomy
Chapter 2 Basic Brain Anatomy Where this icon appears, visit The Brain http://go.jblearning.com/ManascoCWS to view the corresponding video. The average weight of an adult human brain is about 3 pounds. That is about the weight of a single small To understand how a part of the brain is disordered by cantaloupe or six grapefruits. If a human brain was damage or disease, speech-language pathologists must placed on a tray, it would look like a pretty unim- first know a few facts about the anatomy of the brain pressive mass of gray lumpy tissue (Luria, 1973). In in general and how a normal and healthy brain func- fact, for most of history the brain was thought to be tions. Readers can use the anatomy presented here as an utterly useless piece of flesh housed in the skull. a reference, review, and jumping off point to under- The Egyptians believed that the heart was the seat standing the consequences of damage to the structures of human intelligence, and as such, the brain was discussed. This chapter begins with the big picture promptly removed during mummification. In his and works down into the specifics of brain anatomy. essay On Sleep and Sleeplessness, Aristotle argued that the brain is a complex cooling mechanism for our bodies that works primarily to help cool and The Central Nervous condense water vapors rising in our bodies (Aristo- tle, republished 2011). He also established a strong System argument in this same essay for why infants should not drink wine. The basis for this argument was that The nervous system is divided into two major sec- infants already have Central nervous tions: the central nervous system and the peripheral too much moisture system The brain and nervous system. -
Imaging of the Confused Patient: Toxic Metabolic Disorders Dara G
Imaging of the Confused Patient: Toxic Metabolic Disorders Dara G. Jamieson, M.D. Weill Cornell Medicine, New York, NY The patient who presents with either acute or subacute confusion, in the absence of a clearly defined speech disorder and focality on neurological examination that would indicate an underlying mass lesion, needs to be evaluated for a multitude of neurological conditions. Many of the conditions that produce the recent onset of alteration in mental status, that ranges from mild confusion to florid delirium, may be due to infectious or inflammatory conditions that warrant acute intervention such as antimicrobial drugs, steroids or plasma exchange. However, some patients with recent onset of confusion have an underlying toxic-metabolic disorders indicating a specific diagnosis with need for appropriate treatment. The clinical presentations of some patients may indicate the diagnosis (e.g. hypoglycemia, chronic alcoholism) while the imaging patterns must be recognized to make the diagnosis in other patients. Toxic-metabolic disorders constitute a group of diseases and syndromes with diverse causes and clinical presentations. Many toxic-metabolic disorders have no specific neuroimaging correlates, either at early clinical stages or when florid symptoms develop. However, some toxic-metabolic disorders have characteristic abnormalities on neuroimaging, as certain areas of the central nervous system appear particularly vulnerable to specific toxins and metabolic perturbations. Areas of particular vulnerability in the brain include: 1) areas of high-oxygen demand (e.g. basal ganglia, cerebellum, hippocampus), 2) the cerebral white matter and 3) the mid-brain. Brain areas of high-oxygen demand are particularly vulnerable to toxins that interfere with cellular respiratory metabolism. -
Functional MRI, DTI and Neurophysiology in Horizontal Gaze Palsy with Progressive Scoliosis
Neuroradiology (2008) 50:453–459 DOI 10.1007/s00234-007-0359-1 FUNCTIONAL NEURORADIOLOGY Functional MRI, DTI and neurophysiology in horizontal gaze palsy with progressive scoliosis Sven Haller & Stephan G. Wetzel & Jürg Lütschg Received: 19 August 2007 /Accepted: 14 December 2007 /Published online: 24 January 2008 # Springer-Verlag 2008 Abstract suspected HGPPS, any technique appears appropriate for Introduction Horizontal gaze palsy with progressive scoliosis further investigation. Auditory fMRI suggests that a (HGPPS) is an autosomal recessive disease due to a mutation monaural auditory system with bilateral auditory activations in the ROBO3 gene. This rare disease is of particular interest might be a physiological advantage as compared to a because the absence, or at least reduction, of crossing of the binaural yet only unilateral auditory system, in analogy to ascending lemniscal and descending corticospinal tracts in the anisometropic amblyopia. Moving-head fMRI studies in the medulla predicts abnormal ipsilateral sensory and motor future might show whether the compensatory head move- systems. ments instead of normal eye movements activate the eye- Methods We evaluated the use of functional magnetic movement network. resonance imaging (fMRI) for the first time in this disease and compared it to diffusion tensor imaging (DTI) Keywords Functional MRI . HGPPS . ROBO3 tractography and neurophysiological findings in the same patient with genetically confirmed ROBO3 mutation. Abbreviations Results As expected, motor fMRI, somatosensory evoked BAEP brainstem auditory evoked potentials potentials (SSEP) and motor evoked potentials (MEP) were BOLD blood oxygenation level dependent dominantly ipsilateral to the stimulation side. DTI tractography DTI diffusion tensor imaging revealed ipsilateral ascending and descending connectivity in fMRI functional magnetic resonance imaging the brainstem yet normal interhemispheric connections in the FEF frontal eye field corpus callosum. -
DR. Sanaa Alshaarawy
By DR. Sanaa Alshaarawy 1 By the end of the lecture, students will be able to : Distinguish the internal structure of the components of the brain stem in different levels and the specific criteria of each level. 1. Medulla oblongata (closed, mid and open medulla) 2. Pons (caudal, mid “Trigeminal level” and rostral). 3. Mid brain ( superior and inferior colliculi). Describe the Reticular formation (structure, function and pathway) being an important content of the brain stem. 2 1. Traversed by the Central Canal. Motor Decussation*. Spinal Nucleus of Trigeminal (Trigeminal sensory nucleus)* : ➢ It is a larger sensory T.S of Caudal part of M.O. nucleus. ➢ It is the brain stem continuation of the Substantia Gelatinosa of spinal cord 3 The Nucleus Extends : Through the whole length of the brain stem and upper segments of spinal cord. It lies in all levels of M.O, medial to the spinal tract of the trigeminal. It receives pain and temperature from face, forehead. Its tract present in all levels of M.O. is formed of descending fibers that terminate in the trigeminal nucleus. 4 It is Motor Decussation. Formed by pyramidal fibers, (75-90%) cross to the opposite side They descend in the Decuss- = crossing lateral white column of the spinal cord as the lateral corticospinal tract. The uncrossed fibers form the ventral corticospinal tract. 5 Traversed by Central Canal. Larger size Gracile & Cuneate nuclei, concerned with proprioceptive deep sensations of the body. Axons of Gracile & Cuneate nuclei form the internal arcuate fibers; decussating forming Sensory Decussation. Pyramids are prominent ventrally. 6 Formed by the crossed internal arcuate fibers Medial Leminiscus: Composed of the ascending internal arcuate fibers after their crossing. -
Neuron Numbers Increase in the Human Amygdala from Birth to Adulthood, but Not in Autism
Neuron numbers increase in the human amygdala from birth to adulthood, but not in autism Thomas A. Avinoa, Nicole Bargera, Martha V. Vargasa, Erin L. Carlsona, David G. Amarala,b,c, Melissa D. Baumana,b, and Cynthia M. Schumanna,1 aDepartment of Psychiatry and Behavioral Sciences, UC Davis MIND Institute, School of Medicine, University of California, Davis, Sacramento, CA 95817; bCalifornia National Primate Research Center, University of California, Davis, CA 95616; and cCenter for Neuroscience, University of California, Davis, CA 95618 Edited by Joseph E. LeDoux, New York University, New York, NY, and approved March 1, 2018 (received for review February 12, 2018) Remarkably little is known about the postnatal cellular develop- process, however, may also make the amygdala more susceptible ment of the human amygdala. It plays a central role in mediating to developmental or environmental insults. emotional behavior and has an unusually protracted development ASD is characterized by impairments in social communication well into adulthood, increasing in size by 40% from youth to combined with restricted interests and behaviors. Alterations in adulthood. Variation from this typical neurodevelopmental trajec- amygdala growth can be detected as early as 2 y of age (23–26) tory could have profound implications on normal emotional devel- and persist into late childhood (5, 27). The severity of the indi- vidual’s social and communicative symptoms positively correlates opment. We report the results of a stereological analysis of the – number of neurons in amygdala nuclei of 52 human brains ranging with amygdala enlargement, suggesting a potential structure from 2 to 48 years of age [24 neurotypical and 28 autism spectrum function relationship (23). -
Auditory and Vestibular Systems Objective • to Learn the Functional
Auditory and Vestibular Systems Objective • To learn the functional organization of the auditory and vestibular systems • To understand how one can use changes in auditory function following injury to localize the site of a lesion • To begin to learn the vestibular pathways, as a prelude to studying motor pathways controlling balance in a later lab. Ch 7 Key Figs: 7-1; 7-2; 7-4; 7-5 Clinical Case #2 Hearing loss and dizziness; CC4-1 Self evaluation • Be able to identify all structures listed in key terms and describe briefly their principal functions • Use neuroanatomy on the web to test your understanding ************************************************************************************** List of media F-5 Vestibular efferent connections The first order neurons of the vestibular system are bipolar cells whose cell bodies are located in the vestibular ganglion in the internal ear (NTA Fig. 7-3). The distal processes of these cells contact the receptor hair cells located within the ampulae of the semicircular canals and the utricle and saccule. The central processes of the bipolar cells constitute the vestibular portion of the vestibulocochlear (VIIIth cranial) nerve. Most of these primary vestibular afferents enter the ipsilateral brain stem inferior to the inferior cerebellar peduncle to terminate in the vestibular nuclear complex, which is located in the medulla and caudal pons. The vestibular nuclear complex (NTA Figs, 7-2, 7-3), which lies in the floor of the fourth ventricle, contains four nuclei: 1) the superior vestibular nucleus; 2) the inferior vestibular nucleus; 3) the lateral vestibular nucleus; and 4) the medial vestibular nucleus. Vestibular nuclei give rise to secondary fibers that project to the cerebellum, certain motor cranial nerve nuclei, the reticular formation, all spinal levels, and the thalamus. -
Sounds, Spectra, Audio Illusions, and Data Representations
Sounds, spectra, audio illusions, and data representations Edoardo Milotti, Dipartimento di Fisica, Università di Trieste Introduction to Signal Processing Techniques A. Y. 2016-17 Piano notes Pure 440 Hz sound BacK to the initial recording, left channel amplitude (volt, ampere, normalized amplitude units … ) time (sample number) amplitude (volt, ampere, normalized amplitude units … ) 0.004 0.002 0.000 -0.002 -0.004 0 1000 2000 3000 4000 5000 time (sample number) amplitude (volt, ampere, normalized amplitude units … ) 0.004 0.002 0.000 -0.002 -0.004 0 1000 2000 3000 4000 5000 time (sample number) squared amplitude frequency (frequency index) Short Time Fourier Transform (STFT) Fourier Transform A single blocK of data Segmented data Fourier Transform squared amplitude frequency (frequency index) squared amplitude frequency (frequency index) amplitude of most important Fourier component time Spectrogram time frequency • Original audio file • Reconstruction with the largest amplitude frequency component only • Reconstruction with 7 frequency components • Reconstruction with 7 frequency components + phase information amplitude (volt, ampere, normalized amplitude units … ) time (sample number) amplitude (volt, ampere, normalized amplitude units … ) time (sample number) squared amplitude frequency (frequency index) squared amplitude frequency (frequency index) squared amplitude Include only Fourier components with amplitudes ABOVE a given threshold 18 Fourier components frequency (frequency index) squared amplitude Include only Fourier components with amplitudes ABOVE a given threshold 39 Fourier components frequency (frequency index) squared amplitude frequency (frequency index) Glissando In music, a glissando [ɡlisˈsando] (plural: glissandi, abbreviated gliss.) is a glide from one pitch to another. It is an Italianized musical term derived from the French glisser, to glide.