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Of Analyses December 2016 Imprint Index of Analyses December 2016 Imprint We reserve the right for errors and alterations. Our laboratory is part of the synlab group. © 2nd edition 2016/2017 By SYNLAB Medizinisches Versorgungszentrum Humane Genetik Medical Practice and Laboratory for Human genetics 2 Medical Director Dr. med. Dr. rer. nat. Claudia Nevinny-Stickel Consultant Human geneticist Postal Address Lindwurmstrasse 23 D-80337 Munich Germany Telephone and Fax Reception +49 (0)89. 54 86 29 -0 Invoicing -0 Fax -243 Molecular Genetics -554 Cytogenetics -559 Office hours Monday – Friday 8.30 – 18.00 [email protected] www.humane-genetik.de 3 Table of contents Preanalytics .................................................................................................06 Molecular genetic analyses ........................................................................09 Cardiac diseases ..................................................................................08 Complex syndromes .............................................................................11 Connective Tissue Disorders ................................................................20 Endocrinology .......................................................................................22 Eye diseases .........................................................................................24 Fertility disorders .................................................................................25 Gastrointestinal diseases .....................................................................26 Hematology ..........................................................................................27 Hemophilia ...........................................................................................28 Hereditary cancer syndromes ..............................................................30 Immune disorders ................................................................................36 Intersexuality ........................................................................................37 Kidney diseases ....................................................................................37 Liver diseases .......................................................................................39 Lung diseases ......................................................................................42 Metabolic diseases ...............................................................................42 Mitochondrial diseases ........................................................................52 Neurodegenerative diseases ...............................................................54 Neuromuscular diseases /Neuropathies.............................................57 Nutrigenetics ........................................................................................62 Pancreatic diseases .............................................................................63 Periodic fever .......................................................................................63 Pharmacogenetics ...............................................................................65 Short stature ........................................................................................67 Thrombophilia / Atherosclerosis..........................................................68 Uniparental disomies ...........................................................................73 Kinship Analyses .........................................................................................73 Cytogenetics and molecular cytogenetics .................................................74 Prenatal chromosome diagnostics ......................................................74 Postnatal chromosome diagnostics.....................................................76 Molecular cytogenetics ........................................................................78 Chromosomal microarray diagnostics ......................................................81 Quality assurance ........................................................................................82 Index ............................................................................................................84 4 Preanalytics Testing Material For genetic testing nuclei-containing cells of the patient are required, which are either cultivated or subjected to DNA extraction. Cells can be harvested from peripheral blood, buccal swabs, amniotic fluid, chorionic villi (CVS), or tissue samples. In case of blood collection, no special preparation of the patient, e.g. fasting, is required. The sample may be collected at any time of the day. The blood collection must be performed under sterile conditions. The tubes should always be filled up to the measure line to guarantee an optimal ratio between blood and anticoagulants. Please invert the tubes carefully after blood collection to allow adequate mixing of blood and anticoagulants. Blood samples should not be older than one week. Please make sure that the samples are sent to our laboratory immediately at ambient temperature, and avoid extreme temperatures during the transport. 5 Preanalytics Cytogenetic and Molecular Cytogenetic Analyses 5 ml sterile heparin blood (infants and young children < 5 ml) 10-15 ml amniotic fluid 10-20 mg chorionic villi (CVS) Aborted fetal tissue with chorionic villi (CVS) Skin biopsy Buccal swab Chromosomal Microarray Analyses: 3-5 ml EDTA-blood, or 2 µg high quality DNA. In case of a conspicuous finding, 3-5 ml heparin blood from the patient is needed for validation of the result by FISH-analysis. In addition, EDTA-blood or 2 µg high quality DNA, and heparin blood of the parents may be necessary. Molecular Genetic Analyses 5 ml EDTA-blood (infants and young children < 3 ml) Amniotic fluid Chorionic villi (CVS) Aborted fetal tissue Tissue Skin biopsy Buccal swabs In general, EDTA-blood is the most suitable material for molecular genetic analyses. Please inquire if other genetic material is suitable for the requested analysis if blood collection is not possible. Kinship Analyses 3 buccal swabs or 3-5 ml EDTA-blood 6 Preanalytics Sample Identification and Required Forms Sample tubes and the corresponding request forms must be clearly labelled with the patient’s name and date of birth for correct identification. Our request forms are available for download at www.humane-genetik.de/en/forms/. Please state the indication for the requested analysis. A short anamnesis as well as family history will significantly support our experts in performing the optimal analysis and for assessing the findings . According to German law, the informed consent form must be signed either by the patient (or his/her legal representative) or by the referring physician. This form is mandatory for every genetic analysis and must be sent together with the sample and the request forms. Please note that w require prepayment. Prices of our analyses are available on request [email protected]. If you are part of the Synlab group, samples may be dispatched to Synlab MVZ in Leinfelden, Germany, as the primary hub for all incoming samples originating in foreign countries. Samples will then be forwarded to MVZ Humane Genetik Munich accordingly. The spectrum of our genetic analyses is continually expanding. An updated version of the genetic analyses we currently offer can be accessed on our website www.humane-genetik.de/en/. Genetic analyses not offered by our laboratory can be performed in co-operation with other accredited laboratories. Please inquire. 7 Molecular genetic analyses Cardiac diseases Arrhythmogenic right ventricular cardiomyopathy/dysplasia (ARVC/D) OMIM: 609040 Gene: PKP2, locus 12p11.21 Inheritance: autosomal dominant Indication: right- or biventricular dilation, arrhythmia, syncope, family history of sudden cardiac death Material: 3-5 ml EDTA blood Methods/TAT: 1st tier: sequencing analysis of PKP2 (approx. 2 wks) 2nd tier: deletion/duplication analysis (MLPA) of PKP2 (approx. 2 wks) Brugada syndrome, BrS1 OMIM: 601144 Gene: SCN5A, locus 3p21-23 Inheritance: usually autosomal dominant, variable penetrance Indication: ECG anomalies (T-wave alternans, QT-segment elevation), syncope, absence of structural cardiac disease, family history of sudden cardiac death Material: 3-5 ml EDTA blood Methods/TAT: 1st tier: sequencing analysis of SCN5A (approx. 3 wks) 2nd tier: deletion/duplication analysis (MLPA) of SCN5A (approx. 2 wks) 8 Molecular genetic analyses Cardiomyopathy (hypertrophic/dilated) OMIM: 115197, 613426, 192600, 601494, 115195, 11880, 613690, 115200 Genes: MYBPC3, MYH7, TNNT2, TNNI3 and LMNA, loci 11p11.2, 14q11.2, 1q32.1, 19q13.42, 1q22 Inheritance: autosomal dominant Indication: right- or biventricular dilation, arrhythmia, syncope, family history of sudden cardiac death Material: 3-5 ml EDTA blood Methods/TAT: 1st tier: sequencing analysis of MYBPC3 (approx. 4 wks) 2nd tier: sequencing analysis of MYH7 (approx. 4 wks) 3rd tier: sequencing analysis of TNNT2 (approx. 3 wks) 4th tier: sequencing analysis of TNNI3 (approx. 2 wks) 5th tier: sequencing analysis of LMNA (approx. 2 wks) 6th tier: deletion/duplication analysis (MLPA) of MYBPC3 (approx. 2 wks) 7th tier: deletion/duplication analysis (MLPA) of MYH7 (approx. 2 wks) 8th tier: deletion/duplication analysis (MLPA) of TNNT2 (approx. 2 wks) Catecholaminergic polymorphic ventricular tachycardia (CPVT) OMIM: 604772 Gene: RYR2, locus 1q43 Inheritance: autosomal dominant Indication: polymorphic ventricular tachycardia induced by physical activity,
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