UNIX for ALEPH Users
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HEP Computing Part I Intro to UNIX/LINUX Adrian Bevan
HEP Computing Part I Intro to UNIX/LINUX Adrian Bevan Lectures 1,2,3 [email protected] 1 Lecture 1 • Files and directories. • Introduce a number of simple UNIX commands for manipulation of files and directories. • communicating with remote machines [email protected] 2 What is LINUX • LINUX is the operating system (OS) kernel. • Sitting on top of the LINUX OS are a lot of utilities that help you do stuff. • You get a ‘LINUX distribution’ installed on your desktop/laptop. This is a sloppy way of saying you get the OS bundled with lots of useful utilities/applications. • Use LINUX to mean anything from the OS to the distribution we are using. • UNIX is an operating system that is very similar to LINUX (same command names, sometimes slightly different functionalities of commands etc). – There are usually enough subtle differences between LINUX and UNIX versions to keep you on your toes (e.g. Solaris and LINUX) when running applications on multiple platforms …be mindful of this if you use other UNIX flavours. – Mac OS X is based on a UNIX distribution. [email protected] 3 Accessing a machine • You need a user account you should all have one by now • can then log in at the terminal (i.e. sit in front of a machine and type in your user name and password to log in to it). • you can also log in remotely to a machine somewhere else RAL SLAC CERN London FNAL in2p3 [email protected] 4 The command line • A user interfaces with Linux by typing commands into a shell. -
Lecture 7 Network Management and Debugging
SYSTEM ADMINISTRATION MTAT.08.021 LECTURE 7 NETWORK MANAGEMENT AND DEBUGGING Prepared By: Amnir Hadachi and Artjom Lind University of Tartu, Institute of Computer Science [email protected] / [email protected] 1 LECTURE 7: NETWORK MGT AND DEBUGGING OUTLINE 1.Intro 2.Network Troubleshooting 3.Ping 4.SmokePing 5.Trace route 6.Network statistics 7.Inspection of live interface activity 8.Packet sniffers 9.Network management protocols 10.Network mapper 2 1. INTRO 3 LECTURE 7: NETWORK MGT AND DEBUGGING INTRO QUOTE: Networks has tendency to increase the number of interdependencies among machine; therefore, they tend to magnify problems. • Network management tasks: ✴ Fault detection for networks, gateways, and critical servers ✴ Schemes for notifying an administrator of problems ✴ General network monitoring, to balance load and plan expansion ✴ Documentation and visualization of the network ✴ Administration of network devices from a central site 4 LECTURE 7: NETWORK MGT AND DEBUGGING INTRO Network Size 160 120 80 40 Management Procedures 0 AUTOMATION ILLUSTRATION OF NETWORK GROWTH VS MGT PROCEDURES AUTOMATION 5 LECTURE 7: NETWORK MGT AND DEBUGGING INTRO • Network: • Subnets + Routers / switches Time to consider • Automating mgt tasks: • shell scripting source: http://www.eventhelix.com/RealtimeMantra/Networking/ip_routing.htm#.VvjkA2MQhIY • network mgt station 6 2. NETWORK TROUBLES HOOTING 7 LECTURE 7: NETWORK MGT AND DEBUGGING NETWORK TROUBLESHOOTING • Many tools are available for debugging • Debugging: • Low-level (e.g. TCP/IP layer) • high-level (e.g. DNS, NFS, and HTTP) • This section progress: ping trace route GENERAL ESSENTIAL TROUBLESHOOTING netstat TOOLS STRATEGY nmap tcpdump … 8 LECTURE 7: NETWORK MGT AND DEBUGGING NETWORK TROUBLESHOOTING • Before action, principle to consider: ✴ Make one change at a time ✴ Document the situation as it was before you got involved. -
Unix/Linux Command Reference
Unix/Linux Command Reference .com File Commands System Info ls – directory listing date – show the current date and time ls -al – formatted listing with hidden files cal – show this month's calendar cd dir - change directory to dir uptime – show current uptime cd – change to home w – display who is online pwd – show current directory whoami – who you are logged in as mkdir dir – create a directory dir finger user – display information about user rm file – delete file uname -a – show kernel information rm -r dir – delete directory dir cat /proc/cpuinfo – cpu information rm -f file – force remove file cat /proc/meminfo – memory information rm -rf dir – force remove directory dir * man command – show the manual for command cp file1 file2 – copy file1 to file2 df – show disk usage cp -r dir1 dir2 – copy dir1 to dir2; create dir2 if it du – show directory space usage doesn't exist free – show memory and swap usage mv file1 file2 – rename or move file1 to file2 whereis app – show possible locations of app if file2 is an existing directory, moves file1 into which app – show which app will be run by default directory file2 ln -s file link – create symbolic link link to file Compression touch file – create or update file tar cf file.tar files – create a tar named cat > file – places standard input into file file.tar containing files more file – output the contents of file tar xf file.tar – extract the files from file.tar head file – output the first 10 lines of file tar czf file.tar.gz files – create a tar with tail file – output the last 10 lines -
Useful Tai Ls Dino
SCIENCE & NATURE Useful Tails Materials Pictures of a possum, horse, lizard, rattlesnake, peacock, fish, bird, and beaver What to do 1. Display the animal pictures so the children can see them. 2. Say the following sentences. Ask the children to guess the animal by the usefulness of its tail. I use my tail for hanging upside down. (possum) I use my tail as a fly swatter. (horse) When my tail breaks off, I grow a new one. (lizard) I shake my noisy tail when I am about to strike. (rattlesnake) My tail opens like a beautiful fan. (peacock) I use my tail as a propeller. I cannot swim without it. (fish) I can’t fly without my tail. (bird) I use my powerful tail for building. (beaver) More to do Ask the children if they can name other animals that have tails. Ask them how these animals’Downloaded tails might by [email protected] useful. from Games: Cut out the tailsProFilePlanner.com of each of the animals. Encourage the children to pin the tails on the pictures (like “Pin the Tail on the Donkey”). Dotti Enderle, Richmond, TX Dino Dig Materials Plastic or rubber dinosaurs or bones Sand Wide-tip, medium-sized paintbrushes Plastic sand shovels Small plastic buckets Clipboards Paper Pencil or pens 508 The GIANT Encyclopedia of Preschool Activities for Four-Year-Olds Downloaded by [email protected] from ProFilePlanner.com SCIENCE & NATURE What to do 1. Beforehand, hide plastic or rubber dinosaurs or bones in the sand. 2. Give each child a paintbrush, shovel, and bucket. 3. -
Unix/Linux Command Reference
Unix/Linux Command Reference .com File Commands System Info ls – directory listing date – show the current date and time ls -al – formatted listing with hidden files cal – show this month's calendar cd dir - change directory to dir uptime – show current uptime cd – change to home w – display who is online pwd – show current directory whoami – who you are logged in as mkdir dir – create a directory dir finger user – display information about user rm file – delete file uname -a – show kernel information rm -r dir – delete directory dir cat /proc/cpuinfo – cpu information rm -f file – force remove file cat /proc/meminfo – memory information rm -rf dir – force remove directory dir * man command – show the manual for command cp file1 file2 – copy file1 to file2 df – show disk usage cp -r dir1 dir2 – copy dir1 to dir2; create dir2 if it du – show directory space usage doesn't exist free – show memory and swap usage mv file1 file2 – rename or move file1 to file2 whereis app – show possible locations of app if file2 is an existing directory, moves file1 into which app – show which app will be run by default directory file2 ln -s file link – create symbolic link link to file Compression touch file – create or update file tar cf file.tar files – create a tar named cat > file – places standard input into file file.tar containing files more file – output the contents of file tar xf file.tar – extract the files from file.tar head file – output the first 10 lines of file tar czf file.tar.gz files – create a tar with tail file – output the last 10 lines -
Shell Variables
Shell Using the command line Orna Agmon ladypine at vipe.technion.ac.il Haifux Shell – p. 1/55 TOC Various shells Customizing the shell getting help and information Combining simple and useful commands output redirection lists of commands job control environment variables Remote shell textual editors textual clients references Shell – p. 2/55 What is the shell? The shell is the wrapper around the system: a communication means between the user and the system The shell is the manner in which the user can interact with the system through the terminal. The shell is also a script interpreter. The simplest script is a bunch of shell commands. Shell scripts are used in order to boot the system. The user can also write and execute shell scripts. Shell – p. 3/55 Shell - which shell? There are several kinds of shells. For example, bash (Bourne Again Shell), csh, tcsh, zsh, ksh (Korn Shell). The most important shell is bash, since it is available on almost every free Unix system. The Linux system scripts use bash. The default shell for the user is set in the /etc/passwd file. Here is a line out of this file for example: dana:x:500:500:Dana,,,:/home/dana:/bin/bash This line means that user dana uses bash (located on the system at /bin/bash) as her default shell. Shell – p. 4/55 Starting to work in another shell If Dana wishes to temporarily use another shell, she can simply call this shell from the command line: [dana@granada ˜]$ bash dana@granada:˜$ #In bash now dana@granada:˜$ exit [dana@granada ˜]$ bash dana@granada:˜$ #In bash now, going to hit ctrl D dana@granada:˜$ exit [dana@granada ˜]$ #In original shell now Shell – p. -
Text Editing in UNIX: an Introduction to Vi and Editing
Text Editing in UNIX A short introduction to vi, pico, and gedit Copyright 20062009 Stewart Weiss About UNIX editors There are two types of text editors in UNIX: those that run in terminal windows, called text mode editors, and those that are graphical, with menus and mouse pointers. The latter require a windowing system, usually X Windows, to run. If you are remotely logged into UNIX, say through SSH, then you should use a text mode editor. It is possible to use a graphical editor, but it will be much slower to use. I will explain more about that later. 2 CSci 132 Practical UNIX with Perl Text mode editors The three text mode editors of choice in UNIX are vi, emacs, and pico (really nano, to be explained later.) vi is the original editor; it is very fast, easy to use, and available on virtually every UNIX system. The vi commands are the same as those of the sed filter as well as several other common UNIX tools. emacs is a very powerful editor, but it takes more effort to learn how to use it. pico is the easiest editor to learn, and the least powerful. pico was part of the Pine email client; nano is a clone of pico. 3 CSci 132 Practical UNIX with Perl What these slides contain These slides concentrate on vi because it is very fast and always available. Although the set of commands is very cryptic, by learning a small subset of the commands, you can edit text very quickly. What follows is an outline of the basic concepts that define vi. -
26 Disk Space Management
26 Disk Space Management 26.1 INTRODUCTION It has been said that the only thing all UNIX systems have in common is the login message asking users to clean up their files and use less disk space. No matter how much space you have, it isn’t enough; as soon as a disk is added, files magically appear to fill it up. Both users and the system itself are potential sources of disk bloat. Chapter 12, Syslog and Log Files, discusses various sources of logging information and the techniques used to manage them. This chapter focuses on space problems caused by users and the technical and psy- chological weapons you can deploy against them. If you do decide to Even if you have the option of adding more disk storage to your system, add a disk, refer to it’s a good idea to follow this chapter’s suggestions. Disks are cheap, but Chapter 9 for help. administrative effort is not. Disks have to be dumped, maintained, cross-mounted, and monitored; the fewer you need, the better. 26.2 DEALING WITH DISK HOGS In the absence of external pressure, there is essentially no reason for a user to ever delete anything. It takes time and effort to clean up unwanted files, and there’s always the risk that something thrown away might be wanted again in the future. Even when users have good intentions, it often takes a nudge from the system administrator to goad them into action. 618 Chapter 26 Disk Space Management 619 On a PC, disk space eventually runs out and the machine’s primary user must clean up to get the system working again. -
MTU and MSS Tutorial
MTU and MSS Tutorial Dr. E. Garcia, [email protected] Published: November 16, 2009. Last Update: November 16, 2009. © 2009 E. Garcia Abstract – This tutorial covers maximum transmission unit ( MTU ), maximum segment size ( MSS ), PING, NETSTAT, and fragmentation. Expressions relevant to these concepts are systematically derived and explained. Keywords: maximum transmission unit, MTU , maximum segment size, MSS , PING, NETSTAT 1 MTU and MSS As discussed in the IP Packet Fragmentation Tutorial (http://www.miislita.com/internet-engineering/ip-packet-fragmentation-tutorial.pdf ) and elsewhere (1 - 3), the data payload ( DP ) of an IP packet is defined as the packet length ( PL ) minus the length of its IP header ( IPHL ), (Eq 1) whereܦܲ theൌ maximum ܲܮ െ ܫܲܪܮ PL is defined as the Maximum Transmission Unit (MTU) . This is the largest IP packet that can be transmitted without further fragmentation. Thus, when PL = MTU (Eq 2) However,ܦܲ ൌ an ܯܷܶ IP packet െ ܫܲܪܮ encapsulates a TCP packet such that DP = TCPHL + MSS (Eq 3) where TCPHL is the length of the TCP header and MSS is the data payload of the TCP packet, also known as the Maximum Segment Size (MSS) . Combining Equations 2 and 3 leads to MSS = MTU – IPHL – TCPHL (Eq 4) Figure 1 illustrates the connection between MTU and MSS –for an IP packet decomposed into three fragments. Figure 1. Fragmentation example where MTU = PL = pl 1 = pl 2 > pl 3 and DP = dp 1 + dp 2 + dp 3 = PL – IPHL . © 2009 E. Garcia 1 Typically, IP and TCP headers are 20 bytes long. Thus, MSS = MTU – 40 (Eq 5) If IP or TCP options are specified, the MSS is further reduced by the number of bytes taken up by the options (OP), each of which may be one byte or several bytes in size. -
User Manual for Ox: an Attribute-Grammar Compiling System Based on Yacc, Lex, and C Kurt M
Computer Science Technical Reports Computer Science 12-1992 User Manual for Ox: An Attribute-Grammar Compiling System based on Yacc, Lex, and C Kurt M. Bischoff Iowa State University Follow this and additional works at: http://lib.dr.iastate.edu/cs_techreports Part of the Programming Languages and Compilers Commons Recommended Citation Bischoff, Kurt M., "User Manual for Ox: An Attribute-Grammar Compiling System based on Yacc, Lex, and C" (1992). Computer Science Technical Reports. 21. http://lib.dr.iastate.edu/cs_techreports/21 This Article is brought to you for free and open access by the Computer Science at Iowa State University Digital Repository. It has been accepted for inclusion in Computer Science Technical Reports by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. User Manual for Ox: An Attribute-Grammar Compiling System based on Yacc, Lex, and C Abstract Ox generalizes the function of Yacc in the way that attribute grammars generalize context-free grammars. Ordinary Yacc and Lex specifications may be augmented with definitions of synthesized and inherited attributes written in C syntax. From these specifications, Ox generates a program that builds and decorates attributed parse trees. Ox accepts a most general class of attribute grammars. The user may specify postdecoration traversals for easy ordering of side effects such as code generation. Ox handles the tedious and error-prone details of writing code for parse-tree management, so its use eases problems of security and maintainability associated with that aspect of translator development. The translators generated by Ox use internal memory management that is often much faster than the common technique of calling malloc once for each parse-tree node. -
Useful Commands in Linux and Other Tools for Quality Control
Useful commands in Linux and other tools for quality control Ignacio Aguilar INIA Uruguay 05-2018 Unix Basic Commands pwd show working directory ls list files in working directory ll as before but with more information mkdir d make a directory d cd d change to directory d Copy and moving commands To copy file cp /home/user/is . To copy file directory cp –r /home/folder . to move file aa into bb in folder test mv aa ./test/bb To delete rm yy delete the file yy rm –r xx delete the folder xx Redirections & pipe Redirection useful to read/write from file !! aa < bb program aa reads from file bb blupf90 < in aa > bb program aa write in file bb blupf90 < in > log Redirections & pipe “|” similar to redirection but instead to write to a file, passes content as input to other command tee copy standard input to standard output and save in a file echo copy stream to standard output Example: program blupf90 reads name of parameter file and writes output in terminal and in file log echo par.b90 | blupf90 | tee blup.log Other popular commands head file print first 10 lines list file page-by-page tail file print last 10 lines less file list file line-by-line or page-by-page wc –l file count lines grep text file find lines that contains text cat file1 fiel2 concatenate files sort sort file cut cuts specific columns join join lines of two files on specific columns paste paste lines of two file expand replace TAB with spaces uniq retain unique lines on a sorted file head / tail $ head pedigree.txt 1 0 0 2 0 0 3 0 0 4 0 0 5 0 0 6 0 0 7 0 0 8 0 0 9 0 0 10 -
Official Standard of the Portuguese Water Dog General Appearance
Page 1 of 3 Official Standard of the Portuguese Water Dog General Appearance: Known for centuries along Portugal's coast, this seafaring breed was prized by fishermen for a spirited, yet obedient nature, and a robust, medium build that allowed for a full day's work in and out of the water. The Portuguese Water Dog is a swimmer and diver of exceptional ability and stamina, who aided his master at sea by retrieving broken nets, herding schools of fish, and carrying messages between boats and to shore. He is a loyal companion and alert guard. This highly intelligent utilitarian breed is distinguished by two coat types, either curly or wavy; an impressive head of considerable breadth and well proportioned mass; a ruggedly built, well-knit body; and a powerful, thickly based tail, carried gallantly or used purposefully as a rudder. The Portuguese Water Dog provides an indelible impression of strength, spirit, and soundness. Size, Proportion, Substance: Size - Height at the withers - Males, 20 to 23 inches. The ideal is 22 inches. Females, 17 to 21 inches. The ideal is 19 inches. Weight - For males, 42 to 60 pounds; for females, 35 to 50 pounds. Proportion - Off square; slightly longer than tall when measured from prosternum to rearmost point of the buttocks, and from withers to ground. Substance - Strong, substantial bone; well developed, neither refined nor coarse, and a solidly built, muscular body. Head: An essential characteristic; distinctively large, well proportioned and with exceptional breadth of topskull. Expression - Steady, penetrating, and attentive. Eyes - Medium in size; set well apart, and a bit obliquely.