Jochen Kumlehn Nils Stein Editors Biotechnological Approaches to Barley Improvement Biotechnology in Agriculture and Forestry
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Biotechnology in Agriculture and Forestry 69 Jack M. Widholm · Jochen Kumlehn · Toshiyuki Nagata Series Editors Jochen Kumlehn Nils Stein Editors Biotechnological Approaches to Barley Improvement Biotechnology in Agriculture and Forestry Volume 69 Series Editors Prof. Dr. Jack M. Widholm (Managing Editor) 285A E.R. Madigan Laboratory, Department of Crop Sciences, University of Illinois, 1201 W. Gregory, Urbana, IL 61801, USA Dr. Jochen Kumlehn Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Head, Plant Reproductive Biology, Corrensstr. 3, 06466 Gatersleben, Germany Prof. Dr. Toshiyuki Nagata Professor and Dean, Faculty of Biological Sciences and Applied Chemistry, Hosei University, 3-7-2 Kajino-cho, Koganei-shi, Tokyo 184-8584, Japan; Emeritus Professor of the University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan More information about this series at http://www.springer.com/series/798 Jochen Kumlehn • Nils Stein Editors Biotechnological Approaches to Barley Improvement Editors Jochen Kumlehn Nils Stein Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Germany ISSN 0934-943X ISBN 978-3-662-44405-4 ISBN 978-3-662-44406-1 (eBook) DOI 10.1007/978-3-662-44406-1 Springer Heidelberg New York Dordrecht London Library of Congress Control Number: 2014954986 © Springer-Verlag Berlin Heidelberg 2014 This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed. Exempted from this legal reservation are brief excerpts in connection with reviews or scholarly analysis or material supplied specifically for the purpose of being entered and executed on a computer system, for exclusive use by the purchaser of the work. Duplication of this publication or parts thereof is permitted only under the provisions of the Copyright Law of the Publisher’s location, in its current version, and permission for use must always be obtained from Springer. Permissions for use may be obtained through RightsLink at the Copyright Clearance Center. Violations are liable to prosecution under the respective Copyright Law. The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. While the advice and information in this book are believed to be true and accurate at the date of publication, neither the authors nor the editors nor the publisher can accept any legal responsibility for any errors or omissions that may be made. The publisher makes no warranty, express or implied, with respect to the material contained herein. Printed on acid-free paper Springer is part of Springer Science+Business Media (www.springer.com) Preface Barley is deemed one of the first plant species to be domesticated. Its cultivation over a very broad range of environments and its versatile utilization for the production of raw material for feed and food render it a top-four crop plant worldwide. Representing the temperate cereals of the Triticeae tribe (wheat, rye, triticale), barley has been used as experimental model since the era of classical genetics and cytogenetics—a role that has been reinforced along the development of contemporary biology and crop plant research. The generation of comprehensive genome sequence data is regarded as a cor- nerstone with major impact into all areas of modern barley research. Thus, we are convinced of the timeliness and importance to survey and reflect the current state of biotechnologically oriented barley research in the present volume of the Springer series Biotechnology in Agriculture and Forestry. Besides genome sequencing, major progress was achieved by deep sequencing-based transcriptomics, the estab- lishment of comprehensive mutant panels and TILLING platforms, the generation of high-resolution genetic maps, efficient site-directed mutagenesis using custom- izable endonucleases, as well as the establishment of automated plant phenotyping facilities. This powerful suite of tools greatly facilitates the elucidation of molec- ular mechanisms underlying plant performance, which by itself is a prerequisite for knowledge-driven progress in barley breeding to cope with future challenges in agriculture and the related value chain. The present volume is structured into two major sections: the first focusing on current agricultural challenges and approaches to barley improvement and the second giving insight to recent progress in methodology. The individual chapters provide the reader with comprehensive information spanning from fundamental aspects to special applications. We are grateful to all the contributing authors—all are leading scientists in their respective field of research—for their outstanding input. All chapters were exten- sively peer reviewed to ensure for high standard and scientifically sound informa- tion throughout this compilation. We thus are very grateful to the contribution of all the involved reviewers, who were willing, in addition to the general load of v vi Preface reviewing that all of us are facing these days, to review and comment on the contributions to this volume. All their names are listed overleaf and their help is very much appreciated. We hope this volume will serve as a useful resource for interested readers with good basic biological knowledge, students, and teachers especially of the life sciences as well as for established scientists working on barley or related subjects. Great thanks also to Springer Publishing for its indefinite patience and support. Gatersleben, Germany Jochen Kumlehn Nils Stein Chapter Reviewers Frank R. Blattner, Germany Roland von Bothmer, Sweden Peter M. Chandler, Australia David B. Collinge, Denmark Catherine Feuillet, Belgium Brian P. Forster, Austria Trevor Garnett, Australia Andreas Graner, Germany Go¨tz Hensel, Germany Andreas Houben, Germany Paul A. Johnston, New Zealand Benjamin Kilian, Germany Peter Langridge, Australia Frank Ordon, Germany Christoph Peterha¨nsel, Germany Richard Pickering, New Zealand Klaus Pillen, Germany Thorsten Schnurbusch, Germany Chris Carolin Scho¨n, Germany Mark E. Sorrells, USA Thomas Thieme, Germany Roberto Tuberosa, Italy Achim Walter, Switzerland Robbie Waugh, UK vii ThiS is a FM Blank Page Contents Part I Agricultural Challenges and Approaches to Barley Improvement 1 The World Importance of Barley and Challenges to Further Improvements ......................................... 3 Harold Verstegen, Otto Ko¨neke, Viktor Korzun, and Reinhard von Broock 2 Genetic Diversity and Germplasm Management: Wild Barley, Landraces, Breeding Materials ............................ 21 Kazuhiro Sato, Andrew Flavell, Joanne Russell, Andreas Bo¨rner, and Jan Valkoun 3 Domestication ......................................... 37 Takao Komatsuda 4 Shoot and Inflorescence Architecture ....................... 55 Laura Rossini, Ron Okagaki, Arnis Druka, and Gary J. Muehlbauer 5 Genetic Control of Reproductive Development ................ 81 Benedikt Drosse, Chiara Campoli, Aman Mulki, and Maria von Korff 6 Improvement of Mineral Nutrition: A Source and Sink for Candidate Genes ....................................... 101 Benjamin D. Gruber and Nicolaus von Wire´n 7 Photosynthesis and Leaf Senescence as Determinants of Plant Productivity .......................................... 113 Per L. Gregersen, Christine H. Foyer, and Karin Krupinska 8 Grain Development ..................................... 139 Winfriede Weschke and Hans Weber ix x Contents 9 Drought Stress Tolerance Mechanisms in Barley and Its Relevance to Cereals ............................................ 161 Polavarpu B. Kavi Kishor, Kalladan Rajesh, Palakolanu S. Reddy, Christiane Seiler, and Nese Sreenivasulu 10 Response to Viral Pathogens .............................. 181 Frank Ordon and Thomas Ku¨hne 11 Host and Nonhost Response to Attack by Fungal Pathogens ...... 197 Patrick Schweizer 12 Responses to Phytophagous Arthropods ..................... 237 Isabel Diaz, Ine´s Cambra, M. Estrella Santamarı´a, Pablo Gonza´lez-Melendi, and Manuel Martı´nez 13 Molecular Farming ..................................... 249 Einar Ma¨ntyla¨ and Bjo¨rn L. O¨ rvar Part II Recent Progress in Methodology 14 Development of Sequence Resources ........................ 271 Nils Stein 15 Induced Genetic Variation, TILLING and NGS-Based Cloning ... 287 Silvio Salvi, Arnis Druka, Sara Giulia Milner, and Damian Gruszka 16 Modulation of Meiotic Recombination ...................... 311 Luke Ramsay, Isabelle Colas, and Robbie Waugh 17 The Secondary Gene Pool of Barley (Hordeum bulbosum): Gene Introgression and Homoeologous Recombination ......... 331 Brigitte Ruge-Wehling and Peter Wehling 18 Genome-Wide Association Scans (GWAS) ................... 345 Robbie Waugh, Bill Thomas, Andrew Flavell, Luke Ramsay, Jordi Comadran, and Joanne Russell 19 Genomic Selection in Barley Breeding ...................... 367 Karl J. Schmid and Patrick Thorwarth 20 Haploid Technology .................................... 379 Jochen Kumlehn 21 Genetic Engineering .................................... 393