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Major Clades of Agaricales: a Multilocus Phylogenetic Overview
Mycologia, 98(6), 2006, pp. 982–995. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 Major clades of Agaricales: a multilocus phylogenetic overview P. Brandon Matheny1 Duur K. Aanen Judd M. Curtis Laboratory of Genetics, Arboretumlaan 4, 6703 BD, Biology Department, Clark University, 950 Main Street, Wageningen, The Netherlands Worcester, Massachusetts, 01610 Matthew DeNitis Vale´rie Hofstetter 127 Harrington Way, Worcester, Massachusetts 01604 Department of Biology, Box 90338, Duke University, Durham, North Carolina 27708 Graciela M. Daniele Instituto Multidisciplinario de Biologı´a Vegetal, M. Catherine Aime CONICET-Universidad Nacional de Co´rdoba, Casilla USDA-ARS, Systematic Botany and Mycology de Correo 495, 5000 Co´rdoba, Argentina Laboratory, Room 304, Building 011A, 10300 Baltimore Avenue, Beltsville, Maryland 20705-2350 Dennis E. Desjardin Department of Biology, San Francisco State University, Jean-Marc Moncalvo San Francisco, California 94132 Centre for Biodiversity and Conservation Biology, Royal Ontario Museum and Department of Botany, University Bradley R. Kropp of Toronto, Toronto, Ontario, M5S 2C6 Canada Department of Biology, Utah State University, Logan, Utah 84322 Zai-Wei Ge Zhu-Liang Yang Lorelei L. Norvell Kunming Institute of Botany, Chinese Academy of Pacific Northwest Mycology Service, 6720 NW Skyline Sciences, Kunming 650204, P.R. China Boulevard, Portland, Oregon 97229-1309 Jason C. Slot Andrew Parker Biology Department, Clark University, 950 Main Street, 127 Raven Way, Metaline Falls, Washington 99153- Worcester, Massachusetts, 01609 9720 Joseph F. Ammirati Else C. Vellinga University of Washington, Biology Department, Box Department of Plant and Microbial Biology, 111 355325, Seattle, Washington 98195 Koshland Hall, University of California, Berkeley, California 94720-3102 Timothy J. -
Entoloma Subgenus Leptonia in Boreal-Temperate Eurasia: Towards a Phylogenetic Species Concept
Persoonia 32, 2014: 141–169 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158514X681774 Entoloma subgenus Leptonia in boreal-temperate Eurasia: towards a phylogenetic species concept O.V. Morozova1, M.E. Noordeloos2, J. Vila3 Key words Abstract This study reveals the concordance, or lack thereof, between morphological and phylogenetic species concepts within Entoloma subg. Leptonia in boreal-temperate Eurasia, combining a critical morphological examina- Entolomataceae tion with a multigene phylogeny based on nrITS, nrLSU and mtSSU sequences. A total of 16 taxa was investigated. morphology Emended concepts of subg. Leptonia and sect. Leptonia as well as the new sect. Dichroi are presented. Two species multiple gene phylogeny (Entoloma percoelestinum and E. sublaevisporum) and one variety (E. tjallingiorum var. laricinum) are described as neotypes new to science. On the basis of the morphological and phylogenetical evidence E. alnetorum is reduced to a variety new species of E. tjallingiorum, and E. venustum is considered a variety of E. callichroum. Accordingly, the new combinations E. tjallingiorum var. alnetorum and E. callichroum var. venustum are proposed. Entoloma lepidissimum var. pau- ciangulatum is now treated as a synonym of E. chytrophilum. Neotypes for E. di chroum, E. euchroum and E. lam- propus are designated. Article info Received: 22 May 2013; Accepted: 9 December 2013: Published: 1 May 2014. INTRODUCTION et al. 2013). Moreover, Baroni et al. (2011) have demonstrated the paraphyly of the Entolomataceae. Continued phylogenetic The genus Entoloma s.l. is very species-rich and morpholo- studies, based on both morphological characters and molecular gically diverse. It contains more than 1 500 species and oc- markers (He et al. -
9B Taxonomy to Genus
Fungus and Lichen Genera in the NEMF Database Taxonomic hierarchy: phyllum > class (-etes) > order (-ales) > family (-ceae) > genus. Total number of genera in the database: 526 Anamorphic fungi (see p. 4), which are disseminated by propagules not formed from cells where meiosis has occurred, are presently not grouped by class, order, etc. Most propagules can be referred to as "conidia," but some are derived from unspecialized vegetative mycelium. A significant number are correlated with fungal states that produce spores derived from cells where meiosis has, or is assumed to have, occurred. These are, where known, members of the ascomycetes or basidiomycetes. However, in many cases, they are still undescribed, unrecognized or poorly known. (Explanation paraphrased from "Dictionary of the Fungi, 9th Edition.") Principal authority for this taxonomy is the Dictionary of the Fungi and its online database, www.indexfungorum.org. For lichens, see Lecanoromycetes on p. 3. Basidiomycota Aegerita Poria Macrolepiota Grandinia Poronidulus Melanophyllum Agaricomycetes Hyphoderma Postia Amanitaceae Cantharellales Meripilaceae Pycnoporellus Amanita Cantharellaceae Abortiporus Skeletocutis Bolbitiaceae Cantharellus Antrodia Trichaptum Agrocybe Craterellus Grifola Tyromyces Bolbitius Clavulinaceae Meripilus Sistotremataceae Conocybe Clavulina Physisporinus Trechispora Hebeloma Hydnaceae Meruliaceae Sparassidaceae Panaeolina Hydnum Climacodon Sparassis Clavariaceae Polyporales Gloeoporus Steccherinaceae Clavaria Albatrellaceae Hyphodermopsis Antrodiella -
Fungal Planet Description Sheets: 320–370
Persoonia 34, 2015: 167–266 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158515X688433 Fungal Planet description sheets: 320–370 P.W. Crous1,2,3, M.J. Wingfield2, J. Guarro 4, M. Hernández-Restrepo1,2, D.A. Sutton5, K. Acharya6, P.A. Barber7,. T Boekhout1, R.A. Dimitrov8, M. Dueñas9, A.K. Dutta6, J. Gené4, D.E. Gouliamova10, M. Groenewald1, L. Lombard1, O.V. Morozova11,12, J. Sarkar 6, M.Th. Smith1, A.M. Stchigel4, N.P. Wiederhold 5,. A.V Alexandrova11,13, I. Antelmi14, J. Armengol15, I. Barnes16, J.F. Cano-Lira 4, R.F. Castañeda Ruiz17, M. Contu18, Pr.R. Courtecuisse19, A.L. da Silveira20, C.A. Decock21, A. de Goes20, J. Edathodu22, E. Ercole23, A.C. Firmino20, A. Fourie16, J. Fournier 24, E.L. Furtado25, A.D.W. Geering26, J. Gershenzon27, A. Giraldo4, D. Gramaje28, A. Hammerbacher27, X.-L. He29, D. Haryadi 30, W. Khemmuk26, A.E. Kovalenko11,12, R. Krawczynski31, F. Laich32, C. Lechat33, U.P. Lopes34, H. Madrid35, E.F. Malysheva12,. Y Marín-Felix4, M.P. Martín9, L. Mostert 36, F. Nigro14, O.L. Pereira34, B. Picillo37, D.B. Pinho34, E.S. Popov11,12, C.A. Rodas Peláez 38, S. Rooney-Latham39, M. Sandoval-Denis 4, R.G. Shivas40, V. Silva35, M.M. Stoilova-Disheva10, M.T. Telleria9, C. Ullah 27, S.B. Unsicker 27, N.A. van der Merwe16, A. Vizzini 23, H.-G. Wagner 41, P.T.W. Wong 42, A.R. Wood 43, J.Z. Groenewald1 Key words Abstract Novel species of fungi described in the present study include the following from Malaysia: Castanediella eucalypti from Eucalyptus pellita, Codinaea acacia from Acacia mangium, Emarcea eucalyptigena from Eucalyptus ITS DNA barcodes brassiana, Myrtapenidiella eucalyptorum from Eucalyptus pellita, Pilidiella eucalyptigena from Eucalyptus brassiana LSU and Strelitziana malaysiana from Acacia mangium. -
A Re-Evaluation of Gasteroid and Cyphelloid Species of Entolomataceae from Eastern North America
A RE-EvALUATiON Of gASTEROiD AND CyPHELLOiD SPECiES Of Entolomataceae fROM EASTERN North AMERiCA TimoThy J. Baroni1 and P. Brandon maTheny2 Abstract. The gasteroid genus Richoniella and the cyphelloid genus Rhodocybella (Entolomataceae) are poorly known fungal genera that have yet to be evaluated in depth in a molecular phylogenetic context. Here, we report a recent find, including detailed descriptions and photographs, of the rarely collected gasteroid species Richo- niella asterospora from southeast North America. Phylogenetic placement of this species within a multi-gene treatment of the Entolomataceae supports the polyphyly of Richoniella. Richoniella asterospora shares an alli- ance with agaricoid and secotioid species within the diverse, heteromorphic genus Entoloma. Also rarely encoun- tered is the cyphelloid genus Rhodocybella, known only from southeast North America. Molecular annotation and phylogenetic analysis of the holotype suggest an affiliation with two lignicolous European pileate-stipitate species of Entoloma, E. pluteisimilis and E. zuccherellii. Results from molecular annotation of three additional species of Entolomataceae are also reported. in addition, we propose recognition of the following robust mono- phyletic groups: the Pouzarella clade within the genus Entoloma; and the genera Rhodocybe and Clitopilopsis and the Rhodophana clade, apart from the genus Clitopilus, within which they have been recently subsumed. Both Richoniella asterospora and Rhodocybella rhododendri are transferred to the genus Entoloma to maintain its monophyly. Keywords: Agaricales, rare fungi, Rhodocybella, Richoniella, systematics, type specimens. Phylogenetic placement of species of Entolomataceae. Rhodogaster is not known Entolomataceae, a highly diverse family of from North America and only one species of Agaricales with ca. 1100 described species Richoniella, R. -
Mycology Praha
f I VO LUM E 52 I / I [ 1— 1 DECEMBER 1999 M y c o l o g y l CZECH SCIENTIFIC SOCIETY FOR MYCOLOGY PRAHA J\AYCn nI .O §r%u v J -< M ^/\YC/-\ ISSN 0009-°476 n | .O r%o v J -< Vol. 52, No. 1, December 1999 CZECH MYCOLOGY ! formerly Česká mykologie published quarterly by the Czech Scientific Society for Mycology EDITORIAL BOARD Editor-in-Cliief ; ZDENĚK POUZAR (Praha) ; Managing editor JAROSLAV KLÁN (Praha) j VLADIMÍR ANTONÍN (Brno) JIŘÍ KUNERT (Olomouc) ! OLGA FASSATIOVÁ (Praha) LUDMILA MARVANOVÁ (Brno) | ROSTISLAV FELLNER (Praha) PETR PIKÁLEK (Praha) ; ALEŠ LEBEDA (Olomouc) MIRKO SVRČEK (Praha) i Czech Mycology is an international scientific journal publishing papers in all aspects of 1 mycology. Publication in the journal is open to members of the Czech Scientific Society i for Mycology and non-members. | Contributions to: Czech Mycology, National Museum, Department of Mycology, Václavské 1 nám. 68, 115 79 Praha 1, Czech Republic. Phone: 02/24497259 or 96151284 j SUBSCRIPTION. Annual subscription is Kč 350,- (including postage). The annual sub scription for abroad is US $86,- or DM 136,- (including postage). The annual member ship fee of the Czech Scientific Society for Mycology (Kč 270,- or US $60,- for foreigners) includes the journal without any other additional payment. For subscriptions, address changes, payment and further information please contact The Czech Scientific Society for ! Mycology, P.O.Box 106, 11121 Praha 1, Czech Republic. This journal is indexed or abstracted in: i Biological Abstracts, Abstracts of Mycology, Chemical Abstracts, Excerpta Medica, Bib liography of Systematic Mycology, Index of Fungi, Review of Plant Pathology, Veterinary Bulletin, CAB Abstracts, Rewicw of Medical and Veterinary Mycology. -
A New Species of Entolomataceae with Cuboidal Basidiospores from the São Paulo Metropolitan Region, Brazil
Mycosphere 6 (1): 69–73 (2015) ISSN 2077 7019 www.mycosphere.org Article Mycosphere Copyright © 2015 Online Edition Doi 10.5943/mycosphere/6/1/8 A new species of Entolomataceae with cuboidal basidiospores from the São Paulo Metropolitan Region, Brazil Karstedt F1 and Capelari M1 1 Instituto de Botânica, Núcleo de Pesquisa em Micologia, Caixa Postal 3005, 01031-970 São Paulo, SP, Brazil Karstedt F, Capelari M 2015 – A new species of Entolomataceae with cuboidal basidiospores from São Paulo Metropolitan Region, Brazil. Mycosphere 6(1), 69–73, Doi 10.5943/mycosphere/6/1/8 Abstract A new species of Entolomataceae with cuboidal basidiospores, from Reserva Biológica de Paranapiacaba, is described, illustrated and discussed. Key words – Entoloma – taxonomy Introduction Most Entolomataceae (Entoloma s.l.) species are characterized by their peculiar shaped basidiospores that are cuboidal to multiangular, iso- to heterodiametric, and have four to nine angles in profile. The cuboidal basidiospores have six quadrangular facets, comprising a depressed adaxial facet, a dihedral pair of lateral facets meeting in the apico-adaxial region, a large abaxial facet, and a dihedral pair of lateral facets that form the basidiospore base (Pegler & Young 1978, 1979). There are 14 species with cuboidal basidiospores cited for Brazil: Entoloma caribaeum (Pegler) Courtec. & Fiard (Coimbra et al. 2013), Entoloma dragonosporum (Singer) E. Horak (Singer 1965, Horak 1982, Singer & Aguiar 1986, Meijer 2001, 2006, Wartchow 2006, Coimbra et al. 2013), Entoloma lycopersicum E. Horak & Singer (Horak 1982), Entoloma murrayi (Berk. & M.A. Curtis) Sacc. (Sobestiansky 2005, Meijer 2006), Entoloma pinnum (Romagn.) Dennis (Putzke & Cavalcanti 1997, Meijer 2006 as cf.), Entoloma viscaurantium E. -
<I>Entoloma</I> Species
MYCOTAXON Volume 108, pp. 297–300 April–June 2009 A lyophylloid Entoloma species (Basidiomycota, Entolomataceae) from Italy Marco Contu1, Giovanni Consiglio2 & Machiel Noordeloos3 * [email protected] Via Traversa via Roma, 12 I-07026 Olbia, SS, Italy 2 [email protected] Via C. Ronzani, 61 I-40033 Casalecchio di Reno, BO, Italy 3 [email protected] National Herbarium of the Netherlands P.O. Box 9514, 2300 RA Leiden, The Netherlands Abstract—An interesting species of Entoloma with a habit reminiscent of Lyophyllum decastes is described as new from a coastal dunes grassland in Sardinia, Italy. A comparison is made with similar species in- and outside Europe. Riassunto— Viene descritta un’interessante nuova specie di Entoloma con un aspetto simile a quello di Lyophyllum decastes, raccolta in un prato di una duna costiera in Sardegna, Italia. Key words—new species, agarics, Agaricales, Entoloma decastes Introduction The genus Entoloma has been studied by the third author on a world-wide scale (Gates & Noordeloos 2007, Manimohan et al. 2006, Noordeloos 1980, 1981, 1987, 1992, 2004, 2008; Noordeloos & Hausknecht 2007). Although the Entoloma flora is well explored in Europe, many species can still be discovered, particularly in the Mediterranean region (e.g., Noordeloos & Polemis 2008, Vila & Caballero 2007). The current paper deals with a remarkable species from the Island of Sardegna, Italy, mimicking a Lyophyllum species. Taxonomy Entoloma decastes Contu, Consiglio & Noordel., sp. nov. Fig. 1 MycoBank MB 513046 Pileus 10–50 mm latus, parum carnosus, convexus deinde expansus, demum centro depressus, plerumque parvo obtuso vel acuto umbone praeditus, glaber, radialiter * Corresponding author 298 .. -
Five <I>Leptonia</I>
ISSN (print) 0093-4666 © 2013. Mycotaxon, Ltd. ISSN (online) 2154-8889 MYCOTAXON http://dx.doi.org/10.5248/125.11 Volume 125, pp. 11–35 July–September 2013 Five Leptonia species from New South Wales and Queensland, Australia David L. Largent1*, Sarah E. Bergemann2, Sandra E. Abell-Davis3, Kerri L. Kluting2, & Griffin A. Cummings2 1Biological Sciences, Humboldt State University, 1 Harpst St, Arcata CA 95521 USA 2Biology Department, Middle Tennessee State University, PO Box 60, Murfreesboro TN 37132 USA 3School of Marine and Tropical Biology, Australian Tropical Herbarium and Centre for Tropical Environmental & Sustainability Science, James Cook University, PO Box 6811, Cairns QLD 4870 AU *Correspondence to: [email protected] Abstract — Descriptions and illustrations are provided for five Leptonia species. Three species are new to science: Leptonia boardinghousensis possesses unusual basidiomes colours, L. ambigua has subisodiametric basidiospores that atypically have obscure angles at the apex and a lignicolous habit, and L. omphalinoides is distinguished by its lignicolous omphalinoid tiny basidiomes. Two species were previously reported: L. poliopus from Europe and L. umbraphila comb. nov from the Seychelles. Key words — Basidiomycota, Entolomataceae, mtSSU, LSU, RPB2 Introduction Surveys of species in the Entolomataceae Kotl. & Pouzar were conducted during April–May of 2010–12 in the temperate rainforests of central New South Wales and February–March 2009–12 from various localities within the Wet Tropics Bioregion throughout northeastern Queensland. Among the 918 entolomatoid collections obtained during the surveys, species of Leptonia (Fr.) P. Kumm. are numerous. Here we describe three new species, L. boardinghousensis, L. ambigua, and L. omphalinoides and report L. poliopus and L. -
SOMA Speaker: Catharine Adams March 17 at the Sonoma County Farm Bureau “How the Death Cap Mushroom Conquered the World”
SOMANEWS From the Sonoma County Mycological Association VOLUME 28: 7 MARCH 2016 SOMA Speaker: Catharine Adams March 17 At the Sonoma County Farm Bureau “How the Death Cap Mushroom Conquered the World” Cat Adams is interested in how chemical ecology in- fluences interactions between plants and fungi. For her PhD in Tom Bruns’ lab, Cat is studying the inva- sive ectomycorrhizal fungus, Amanita phalloides. The death cap mushroom kills more people than any oth- er mushroom, but how the deadly amatoxins influ- ence its invasion remains unexplored. Previously, Cat earned her M.A. with Anne Pringle at Harvard University. Her thesis examined fungal pathogens of the wild Bolivian chili pepper, Capsi- cum chacoense, and how the fungi evolved tolerance to spice. With the Joint Genome Institute, she is now sequencing the genome of one fungal isolate, a Pho- mopsis species, to better understand the novel en- zymes these fungi wield to outwit their plant host. She also collaborates with a group in China, study- loides, was an invasive species, and why we should ing how arbuscular mycorrhizae can help crop plants care. She’ll then tell you about 10 years of research at avoid toxic effects from pollution. Their first paper is Pt Reyes National Seashore examining how Amanita published in Chemosphere. phalloides spreads. Lastly, Cat will outline her ongo- At the SOMA meeting, Cat will explain how scientists ing work to determine the ecological role of Phalloi- determined the death cap mushroom, Amanita phal- des’ toxins, and will present her preliminary findings. NEED EMERGENCY MUSHROOM POISONING ID? After seeking medical attention, contact Darvin DeShazer for identification at (707) 829- 0596. -
<I>Entoloma Trichomarginatum</I>, a New Species of Subgenus <I>Leptonia</I> (<I>Entolomataceae<
MYCOTAXON Volume 111, pp. 31–38 January–March 2010 Entoloma trichomarginatum, a new species of subgenus Leptonia (Entolomataceae) from Spain Laura Llorens van Waveren* & Jaume Llistosella *[email protected] Departament de Biologia Vegetal -Unitat de Botànica Facultat de Biologia, Universitat de Barcelona Av. Diagonal 645, 08028 Barcelona, Spain Abstract — Entoloma trichomarginatum sp. nov. is described from Catalonia (Spain). It belongs to subgenus Leptonia and is characterized by the deep blue to almost blue- black tomentose pileus, bluish lamellae sides, and the sterile lamellar edge composed of almost 350 µm long cheilocystidia filled with blue intracellular pigment. A comparison with other close taxa is given, as well as photographs and drawings of the macroscopical and microscopical characters. Key words — macrofungi, Basidiomycetes, Agaricales, biodiversity, taxonomy Introduction The mycobiota of Spain, and especially Catalonia, is fairly well known, and several species of Entoloma (Fr.) P. Kumm. have been described up to date (Maire 1933, 1937; Singer 1947, Noordeloos et al. 1992, Esteve-Raventós & De La Cruz 1998, Wölfel & Noordeloos 2001, Esteve-Raventós & Ortega 2003, Noordeloos 2004, Vila & Caballero 2007). However, in the course of a study of the macrofungi of the Natural Park of Cadí-Moixeró (Catalonia, Spain) between 2002 and 2008, we gathered a species of subgenus Leptonia that could not be named with the existing selected literature. The species is here proposed as a new based on morphological and ecological features. The Natural Park of Cadí-Moixeró, mainly calcareous, is located in the north of Catalonia and belongs to the mountain range of the Pre-Pyrenees; it is dominated by a mediterranean climate in the lowlands and a warm continental climate in the highlands. -
Notes, Outline and Divergence Times of Basidiomycota
Fungal Diversity (2019) 99:105–367 https://doi.org/10.1007/s13225-019-00435-4 (0123456789().,-volV)(0123456789().,- volV) Notes, outline and divergence times of Basidiomycota 1,2,3 1,4 3 5 5 Mao-Qiang He • Rui-Lin Zhao • Kevin D. Hyde • Dominik Begerow • Martin Kemler • 6 7 8,9 10 11 Andrey Yurkov • Eric H. C. McKenzie • Olivier Raspe´ • Makoto Kakishima • Santiago Sa´nchez-Ramı´rez • 12 13 14 15 16 Else C. Vellinga • Roy Halling • Viktor Papp • Ivan V. Zmitrovich • Bart Buyck • 8,9 3 17 18 1 Damien Ertz • Nalin N. Wijayawardene • Bao-Kai Cui • Nathan Schoutteten • Xin-Zhan Liu • 19 1 1,3 1 1 1 Tai-Hui Li • Yi-Jian Yao • Xin-Yu Zhu • An-Qi Liu • Guo-Jie Li • Ming-Zhe Zhang • 1 1 20 21,22 23 Zhi-Lin Ling • Bin Cao • Vladimı´r Antonı´n • Teun Boekhout • Bianca Denise Barbosa da Silva • 18 24 25 26 27 Eske De Crop • Cony Decock • Ba´lint Dima • Arun Kumar Dutta • Jack W. Fell • 28 29 30 31 Jo´ zsef Geml • Masoomeh Ghobad-Nejhad • Admir J. Giachini • Tatiana B. Gibertoni • 32 33,34 17 35 Sergio P. Gorjo´ n • Danny Haelewaters • Shuang-Hui He • Brendan P. Hodkinson • 36 37 38 39 40,41 Egon Horak • Tamotsu Hoshino • Alfredo Justo • Young Woon Lim • Nelson Menolli Jr. • 42 43,44 45 46 47 Armin Mesˇic´ • Jean-Marc Moncalvo • Gregory M. Mueller • La´szlo´ G. Nagy • R. Henrik Nilsson • 48 48 49 2 Machiel Noordeloos • Jorinde Nuytinck • Takamichi Orihara • Cheewangkoon Ratchadawan • 50,51 52 53 Mario Rajchenberg • Alexandre G.