Phylum Chordata Three Subphyla Eight Vertebrate Classes Eight
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Identification of Mutant Genes and Introgressed Tiger Salamander
www.nature.com/scientificreports OPEN Identification of Mutant Genes and Introgressed Tiger Salamander DNA in the Laboratory Axolotl, Received: 13 October 2016 Accepted: 19 December 2016 Ambystoma mexicanum Published: xx xx xxxx M. Ryan Woodcock1, Jennifer Vaughn-Wolfe1, Alexandra Elias2, D. Kevin Kump1, Katharina Denise Kendall1,5, Nataliya Timoshevskaya1, Vladimir Timoshevskiy1, Dustin W. Perry3, Jeramiah J. Smith1, Jessica E. Spiewak4, David M. Parichy4,6 & S. Randal Voss1 The molecular genetic toolkit of the Mexican axolotl, a classic model organism, has matured to the point where it is now possible to identify genes for mutant phenotypes. We used a positional cloning– candidate gene approach to identify molecular bases for two historic axolotl pigment phenotypes: white and albino. White (d/d) mutants have defects in pigment cell morphogenesis and differentiation, whereas albino (a/a) mutants lack melanin. We identified in white mutants a transcriptional defect in endothelin 3 (edn3), encoding a peptide factor that promotes pigment cell migration and differentiation in other vertebrates. Transgenic restoration of Edn3 expression rescued the homozygous white mutant phenotype. We mapped the albino locus to tyrosinase (tyr) and identified polymorphisms shared between the albino allele (tyra) and tyr alleles in a Minnesota population of tiger salamanders from which the albino trait was introgressed. tyra has a 142 bp deletion and similar engineered alleles recapitulated the albino phenotype. Finally, we show that historical introgression of tyra significantly altered genomic composition of the laboratory axolotl, yielding a distinct, hybrid strain of ambystomatid salamander. Our results demonstrate the feasibility of identifying genes for traits in the laboratory Mexican axolotl. The Mexican axolotl (Ambystoma mexicanum) is the primary salamander model in biological research. -
A New Species of Yunnanozoan with Implications for Deuterostome
R EPORTS istry, K. S. Birdi, Ed. (CRC Press Inc., Boca Raton, FL, 23. L. H. Sperling, Polymeric Multicomponent Materials (grant EA/TU¨ BA-GEBI˙P/2001-1-1) and the Koc¸ Uni- 1997), chap. 9. (Wiley-Interscience, New York, 1997), chap. 6. versity Fiat Fund. 18. , G. McHale, M. I. Newton, Langmuir 18, 2636 24. J. Varga, in Polypropylene Structure, Blends and Com- Supporting Online Material (2002). posites, J. Karger-Kocsis, Ed. (Chapman and Hall, Lon- www.sciencemag.org/cgi/content/full/299/5611/1377/ 19. Materials and methods are available as supporting don, 1995), vol. 1, chap. 3. DC1 material on Science Online. 25. We thank A. Altay, M. A. Gu¨lgu¨n of Sabancı Univer- Materials and Methods 20. R. N. Wenzel, Ind. Eng. Chem. 28, 988 (1936). sity, and A. Alkan of Brisa for their help with SEM Figs. S1 and S2 21. A. B. D. Cassie, S. Baxter, Trans. Faraday Soc. 3, 16 (1944). measurements. A.L.D. acknowledges the financial References 22. R. A. Veselovsky, V. N. Kestelman, Adhesion of Poly- support of the Turkish Academy of Sciences in the mers (McGraw-Hill, New York, 2002), chap. 2. framework of the Young Scientist Award Program 11 September 2002; accepted 22 January 2003 and ventral units are rarely touching (Fig. 1, A New Species of Yunnanozoan G and H), suggesting that the entire anterior region could expand and contract in height. with Implications for The expansion would occur by an accommo- dation along the median zone and about an axis of rotation near the posterior of the units. -
CITES Norfolk Island Boobook Review
Original language: English AC28 Doc. 20.3.6 CONVENTION ON INTERNATIONAL TRADE IN ENDANGERED SPECIES OF WILD FAUNA AND FLORA ___________________ Twenty-eighth meeting of the Animals Committee Tel Aviv (Israel), 30 August-3 September 2015 Interpretation and implementation of the Convention Species trade and conservation Periodic review of species included in Appendices I and II (Resolution Conf 14.8 (Rev CoP16)) PERIODIC REVIEW OF NINOX NOVAESEELANDIAE UNDULATA 1. This document has been submitted by Australia.1 2. After the 25th meeting of the Animals Committee (Geneva, July 2011) and in response to Notification No. 2011/038, Australia committed to the evaluation of Ninox novaeseelandiae undulata as part of the Periodic review of the species included in the CITES Appendices. 3. This taxon is endemic to Australia. 4. Following our review of the status of this species, Australia recommends the transfer of Ninox novaeseelandiae undulata from CITES Appendix I to CITES Appendix II, in accordance with provisions of Resolution Conf. 9.24 (Rev CoP16), Annex 4 precautionary measure A.1. and A.2.a) i). 1 The geographical designations employed in this document do not imply the expression of any opinion whatsoever on the part of the CITES Secretariat (or the United Nations Environment Programme) concerning the legal status of any country, territory, or area, or concerning the delimitation of its frontiers or boundaries. The responsibility for the contents of the document rests exclusively with its author. AC28 Doc. 20.3.6 – p. 1 AC28 Doc. 20.3.6 Annex CoP17 Prop. xx CONVENTION ON INTERNATIONAL TRADE IN ENDANGERED SPECIES OF WILD FAUNA AND FLORA ____________________ DRAFT PROPOSAL TO AMEND THE APPENDICES (in accordance with Annex 4 to Resolution Conf. -
Brains of Primitive Chordates 439
Brains of Primitive Chordates 439 Brains of Primitive Chordates J C Glover, University of Oslo, Oslo, Norway although providing a more direct link to the evolu- B Fritzsch, Creighton University, Omaha, NE, USA tionary clock, is nevertheless hampered by differing ã 2009 Elsevier Ltd. All rights reserved. rates of evolution, both among species and among genes, and a still largely deficient fossil record. Until recently, it was widely accepted, both on morpholog- ical and molecular grounds, that cephalochordates Introduction and craniates were sister taxons, with urochordates Craniates (which include the sister taxa vertebrata being more distant craniate relatives and with hemi- and hyperotreti, or hagfishes) represent the most chordates being more closely related to echinoderms complex organisms in the chordate phylum, particu- (Figure 1(a)). The molecular data only weakly sup- larly with respect to the organization and function of ported a coherent chordate taxon, however, indicat- the central nervous system. How brain complexity ing that apparent morphological similarities among has arisen during evolution is one of the most chordates are imposed on deep divisions among the fascinating questions facing modern science, and it extant deuterostome taxa. Recent analysis of a sub- speaks directly to the more philosophical question stantially larger number of genes has reversed the of what makes us human. Considerable interest has positions of cephalochordates and urochordates, pro- therefore been directed toward understanding the moting the latter to the most closely related craniate genetic and developmental underpinnings of nervous relatives (Figure 1(b)). system organization in our more ‘primitive’ chordate relatives, in the search for the origins of the vertebrate Comparative Appearance of Brains, brain in a common chordate ancestor. -
The Origins of Chordate Larvae Donald I Williamson* Marine Biology, University of Liverpool, Liverpool L69 7ZB, United Kingdom
lopmen ve ta e l B Williamson, Cell Dev Biol 2012, 1:1 D io & l l o l g DOI: 10.4172/2168-9296.1000101 e y C Cell & Developmental Biology ISSN: 2168-9296 Research Article Open Access The Origins of Chordate Larvae Donald I Williamson* Marine Biology, University of Liverpool, Liverpool L69 7ZB, United Kingdom Abstract The larval transfer hypothesis states that larvae originated as adults in other taxa and their genomes were transferred by hybridization. It contests the view that larvae and corresponding adults evolved from common ancestors. The present paper reviews the life histories of chordates, and it interprets them in terms of the larval transfer hypothesis. It is the first paper to apply the hypothesis to craniates. I claim that the larvae of tunicates were acquired from adult larvaceans, the larvae of lampreys from adult cephalochordates, the larvae of lungfishes from adult craniate tadpoles, and the larvae of ray-finned fishes from other ray-finned fishes in different families. The occurrence of larvae in some fishes and their absence in others is correlated with reproductive behavior. Adult amphibians evolved from adult fishes, but larval amphibians did not evolve from either adult or larval fishes. I submit that [1] early amphibians had no larvae and that several families of urodeles and one subfamily of anurans have retained direct development, [2] the tadpole larvae of anurans and urodeles were acquired separately from different Mesozoic adult tadpoles, and [3] the post-tadpole larvae of salamanders were acquired from adults of other urodeles. Reptiles, birds and mammals probably evolved from amphibians that never acquired larvae. -
Scenario Calculations of Mercury Exposure
VKM Report 2019:3 Scenario calculations of mercury exposure from fish and overview of species with high mercury concentrations Opinion of the Panel on Contaminants of the Norwegian Scientific Committee for Food and Environment Report from the Norwegian Scientific Committee for Food and Environment (VKM) 2019:3 Scenario calculations of mercury exposure from fish and overview of species with high mercury concentrations Opinion of the Panel on Contaminants of the Norwegian Scientific Committee for Food and Environment 05.04.2019 ISBN: 978-82-8259-319-9 ISSN: 2535-4019 Norwegian Scientific Committee for Food and Environment (VKM) Po 4404 Nydalen N – 0403 Oslo Norway Phone: +47 21 62 28 00 Email: [email protected] vkm.no vkm.no/english Cover photo: Colourbox Suggested citation: VKM, Heidi Amlund, Kirsten Eline Rakkestad, Anders Ruus, Jostein Starrfelt, Jonny Beyer, Anne Lise Brantsæter, Sara Bremer, Gunnar Sundstøl Eriksen, Espen Mariussen, Ingunn Anita Samdal, Cathrine Thomsen and Helle Katrine Knutsen (2019). Scenario calculations of mercury exposure from fish and overview of species with high mercury concentrations. Opinion of the Panel on Contaminants of the Norwegian Scientific Committee for Food and Environment. VKM report 2019:3, ISBN: 978-82-8259-319-9, ISSN: 2535-4019. Norwegian Scientific Committee for Food and Environment (VKM), Oslo, Norway. Scenario calculations of mercury exposure from fish and overview of species with high mercury concentrations Preparation of the opinion The Norwegian Scientific Committee for Food and Environment (Vitenskapskomiteen for mat og miljø, VKM) appointed a project group to answer the request from the Norwegian Food Safety Authority. The project group consisted of three VKM-members, and three employees, including a project leader, from the VKM secretariat. -
© Iccat, 2007
A5 By-catch Species APPENDIX 5: BY-CATCH SPECIES A.5 By-catch species By-catch is the unintentional/incidental capture of non-target species during fishing operations. Different types of fisheries have different types and levels of by-catch, depending on the gear used, the time, area and depth fished, etc. Article IV of the Convention states: "the Commission shall be responsible for the study of the population of tuna and tuna-like fishes (the Scombriformes with the exception of Trichiuridae and Gempylidae and the genus Scomber) and such other species of fishes exploited in tuna fishing in the Convention area as are not under investigation by another international fishery organization". The following is a list of by-catch species recorded as being ever caught by any major tuna fishery in the Atlantic/Mediterranean. Note that the lists are qualitative and are not indicative of quantity or mortality. Thus, the presence of a species in the lists does not imply that it is caught in significant quantities, or that individuals that are caught necessarily die. Skates and rays Scientific names Common name Code LL GILL PS BB HARP TRAP OTHER Dasyatis centroura Roughtail stingray RDC X Dasyatis violacea Pelagic stingray PLS X X X X Manta birostris Manta ray RMB X X X Mobula hypostoma RMH X Mobula lucasana X Mobula mobular Devil ray RMM X X X X X Myliobatis aquila Common eagle ray MYL X X Pteuromylaeus bovinus Bull ray MPO X X Raja fullonica Shagreen ray RJF X Raja straeleni Spotted skate RFL X Rhinoptera spp Cownose ray X Torpedo nobiliana Torpedo -
Travels on the Backbone Crest (A Group of Embryonic Cells)
BOOKS & ARTS COMMENT EVOLUTION non-deuterostomes. In the most effective section, he strips vertebrates down to their parts, such as the nerve cord, notochord (fore- runner of the vertebral column) and neural Travels on the backbone crest (a group of embryonic cells). He even delves into the largely ignored gut and viscera. Chris Lowe lauds a study of vertebrate origins that Gee discusses how data from living and brings us up to date with a shifting field. fossilized hemichordates and echinoderms have facilitated the search for the origins of the defining chordate anatomies. He ome of the great remaining mysteries groups belong in the highlights how palaeontological, develop- in zoology concern origins — of multi- deuterostome lineage mental and genomic data now all support cellularity, complex nervous systems, of animals alongside the idea that the common ancestor of chor- Slife cycles and sex, for example. The chordates — have dates, hemichordates and echinoderms had evolutionary origin of vertebrates is among largely been resolved. pharyngeal gill slits for filter feeding. That the most intractable of these, despite more Others are as intrac- gives us a glimpse of the early chordate ances- than a century of work spanning a range of table as ever, including tor, which lived around 600 million years ago. disciplines and animal groups. where to place key fos- Other features, such as a complex brain, prob- In Across the Bridge, Henry Gee reviews sil groups such as the ably emerged much later. Having established the most recent research in this area. Gee curious vetulicolians, Across the Bridge: a hazy picture of the earliest chordates, Gee (the senior editor responsible for palae- which lived during Understanding focuses on building vertebrates and their the Origin of the ontology and evolutionary development the Cambrian period, Vertebrates defining features from the basic chordate at Nature) synthesizes contributions from some 541 million to HENRY GEE body plan, for example through spectacular anatomy, developmental biology, genomics, 485 million years ago. -
DEEP SEA LEBANON RESULTS of the 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project
DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project March 2018 DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project Citation: Aguilar, R., García, S., Perry, A.L., Alvarez, H., Blanco, J., Bitar, G. 2018. 2016 Deep-sea Lebanon Expedition: Exploring Submarine Canyons. Oceana, Madrid. 94 p. DOI: 10.31230/osf.io/34cb9 Based on an official request from Lebanon’s Ministry of Environment back in 2013, Oceana has planned and carried out an expedition to survey Lebanese deep-sea canyons and escarpments. Cover: Cerianthus membranaceus © OCEANA All photos are © OCEANA Index 06 Introduction 11 Methods 16 Results 44 Areas 12 Rov surveys 16 Habitat types 44 Tarablus/Batroun 14 Infaunal surveys 16 Coralligenous habitat 44 Jounieh 14 Oceanographic and rhodolith/maërl 45 St. George beds measurements 46 Beirut 19 Sandy bottoms 15 Data analyses 46 Sayniq 15 Collaborations 20 Sandy-muddy bottoms 20 Rocky bottoms 22 Canyon heads 22 Bathyal muds 24 Species 27 Fishes 29 Crustaceans 30 Echinoderms 31 Cnidarians 36 Sponges 38 Molluscs 40 Bryozoans 40 Brachiopods 42 Tunicates 42 Annelids 42 Foraminifera 42 Algae | Deep sea Lebanon OCEANA 47 Human 50 Discussion and 68 Annex 1 85 Annex 2 impacts conclusions 68 Table A1. List of 85 Methodology for 47 Marine litter 51 Main expedition species identified assesing relative 49 Fisheries findings 84 Table A2. List conservation interest of 49 Other observations 52 Key community of threatened types and their species identified survey areas ecological importanc 84 Figure A1. -
Updated Checklist of Marine Fishes (Chordata: Craniata) from Portugal and the Proposed Extension of the Portuguese Continental Shelf
European Journal of Taxonomy 73: 1-73 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2014.73 www.europeanjournaloftaxonomy.eu 2014 · Carneiro M. et al. This work is licensed under a Creative Commons Attribution 3.0 License. Monograph urn:lsid:zoobank.org:pub:9A5F217D-8E7B-448A-9CAB-2CCC9CC6F857 Updated checklist of marine fishes (Chordata: Craniata) from Portugal and the proposed extension of the Portuguese continental shelf Miguel CARNEIRO1,5, Rogélia MARTINS2,6, Monica LANDI*,3,7 & Filipe O. COSTA4,8 1,2 DIV-RP (Modelling and Management Fishery Resources Division), Instituto Português do Mar e da Atmosfera, Av. Brasilia 1449-006 Lisboa, Portugal. E-mail: [email protected], [email protected] 3,4 CBMA (Centre of Molecular and Environmental Biology), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal. E-mail: [email protected], [email protected] * corresponding author: [email protected] 5 urn:lsid:zoobank.org:author:90A98A50-327E-4648-9DCE-75709C7A2472 6 urn:lsid:zoobank.org:author:1EB6DE00-9E91-407C-B7C4-34F31F29FD88 7 urn:lsid:zoobank.org:author:6D3AC760-77F2-4CFA-B5C7-665CB07F4CEB 8 urn:lsid:zoobank.org:author:48E53CF3-71C8-403C-BECD-10B20B3C15B4 Abstract. The study of the Portuguese marine ichthyofauna has a long historical tradition, rooted back in the 18th Century. Here we present an annotated checklist of the marine fishes from Portuguese waters, including the area encompassed by the proposed extension of the Portuguese continental shelf and the Economic Exclusive Zone (EEZ). The list is based on historical literature records and taxon occurrence data obtained from natural history collections, together with new revisions and occurrences. -
Observations on the Biology of the Powerful Owl Ninox Strenua in Southern Victoria by E.G
VOL. 16 (7) SEPTEMBER 1996 267 AUSTRALIAN BIRD WATCHER 1996, 16, 267-295 Observations on the Biology of the Powerful Owl Ninox strenua in Southern Victoria by E.G. McNABB, P.O. \IJ~~ 408, Emerald, Victoria 3782 . \. Summary A pair of Powerful Owls Ninox strenua was studied at each of two sites near Melbourne, Victoria, for three years (1977-1979) and 15 years (1980-1994 inclusive) respectively, by diurnal and nocturnal observation. Home ranges were.mapped, nest sites characterised and breeding chronology and success monitored. General observations at these and eight other sites, of roosting, courting, nesting, parental and juvenile behaviour, fledgling mortality, hunting, interspecific conflicts, bathing, and camouflage posing, are presented. The regularly used parts of the home ranges of two pairs were each estimated as c. 300 ha, although for one pair this applied only to the breeding season. One pair used seven nest trees in 15 years, commonly two or three times each (range 1-4 times) over consecutive years before changing trees. Nest-switching may have been encouraged by human inspection of hollows. Nest entrances were 8-40 m (mean 22 m) above ground. The owls clearly preferred the larger and older trees (estimated 350-500+ years old), beside permanent creeks rather than seasonal streams, and in gullies or on sheltered aspects rather than ridges. Laying dates were spread over a month from late May, with a peak in mid June. The breeding cycle occupied three months from laying to fledging, of which the nestling period lasted 8-9 weeks. Breeding success was 1.4 young per pair per year and 94% nest success; early nests in gullies were more successful than late nests on slopes. -
NHBSS 061 1G Hikida Fieldg
Book Review N$7+IST. BULL. S,$0 SOC. 61(1): 41–51, 2015 A Field Guide to the Reptiles of Thailand by Tanya Chan-ard, John W. K. Parr and Jarujin Nabhitabhata. Oxford University Press, New York, 2015. 344 pp. paper. ISBN: 9780199736492. 7KDLUHSWLOHVZHUHÀUVWH[WHQVLYHO\VWXGLHGE\WZRJUHDWKHUSHWRORJLVWV0DOFROP$UWKXU 6PLWKDQG(GZDUG+DUULVRQ7D\ORU7KHLUFRQWULEXWLRQVZHUHSXEOLVKHGDV6MITH (1931, 1935, 1943) and TAYLOR 5HFHQWO\RWKHUERRNVDERXWUHSWLOHVDQGDPSKLELDQV LQ7KDLODQGZHUHSXEOLVKHG HJ&HAN-ARD ET AL., 1999: COX ET AL DVZHOODVPDQ\ SDSHUV+RZHYHUWKHVHERRNVZHUHWD[RQRPLFVWXGLHVDQGQRWJXLGHVIRURUGLQDU\SHRSOH7ZR DGGLWLRQDOÀHOGJXLGHERRNVRQUHSWLOHVRUDPSKLELDQVDQGUHSWLOHVKDYHDOVREHHQSXEOLVKHG 0ANTHEY & GROSSMANN, 1997; DAS EXWWKHVHERRNVFRYHURQO\DSDUWRIWKHIDXQD The book under review is very well prepared and will help us know Thai reptiles better. 2QHRIWKHDXWKRUV-DUXMLQ1DEKLWDEKDWDZDVP\ROGIULHQGIRUPHUO\WKH'LUHFWRURI1DWXUDO +LVWRU\0XVHXPWKH1DWLRQDO6FLHQFH0XVHXP7KDLODQG+HZDVDQH[FHOOHQWQDWXUDOLVW DQGKDGH[WHQVLYHNQRZOHGJHDERXW7KDLDQLPDOVHVSHFLDOO\DPSKLELDQVDQGUHSWLOHV,Q ZHYLVLWHG.KDR6RL'DR:LOGOLIH6DQFWXDU\WRVXUYH\KHUSHWRIDXQD+HDGYLVHGXV WRGLJTXLFNO\DURXQGWKHUH:HFROOHFWHGIRXUVSHFLPHQVRIDibamusZKLFKZHGHVFULEHG DVDQHZVSHFLHVDibamus somsaki +ONDA ET AL 1RZ,DPYHU\JODGWRNQRZWKDW WKLVERRNZDVSXEOLVKHGE\KLPDQGKLVFROOHDJXHV8QIRUWXQDWHO\KHSDVVHGDZD\LQ +LVXQWLPHO\GHDWKPD\KDYHGHOD\HGWKHSXEOLFDWLRQRIWKLVERRN7KHERRNLQFOXGHVQHDUO\ DOOQDWLYHUHSWLOHV PRUHWKDQVSHFLHV LQ7KDLODQGDQGPRVWSLFWXUHVZHUHGUDZQZLWK H[FHOOHQWGHWDLO,WLVDYHU\JRRGÀHOGJXLGHIRULGHQWLÀFDWLRQRI7KDLUHSWLOHVIRUVWXGHQWV