Nematode-Trapping Fungi from Mangrove Habitats
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Orbilia Fimicola, a Nematophagous Discomycete and Its Arthrobotrys Anamorph
Mycologia, 86(3), 1994, pp. 451-453. ? 1994, by The New York Botanical Garden, Bronx, NY 10458-5126 Orbilia fimicola, a nematophagous discomycete and its Arthrobotrys anamorph Donald H. Pfister range of fungi observed. In field studies, Angel and Farlow Reference Library and Herbarium, Harvard Wicklow (1983), for example, showed the presence of University, Cambridge, Massachusetts 02138 coprophilous fungi for as long as 54 months. Deer dung was placed in a moist chamber 1 day after it was collected. The moist chamber was main? Abstract: Cultures derived from a collection of Orbilia tained at room temperature and in natural light. It fimicola produced an Arthrobotrys anamorph. This ana? underwent periodic drying. Cultures were derived from morph was identified as A. superba. A discomycete ascospores gathered by fastening ascomata to the in? agreeing closely with 0. fimicola was previously re?side of a petri plate lid which contained corn meal ported to be associated with a culture of A. superba agar (BBL). Germination of deposited ascospores was but no definitive connection was made. In the present observed through the bottom of the petri plate. Cul? study, traps were formed in the Arthrobotrys cultures tures were kept at room temperature in natural light. when nematodes were added. The hypothesis is put Ascomata from the moist chamber collection are de? forth that other Orbilia species might be predators posited of in FH. nematodes or invertebrates based on their ascospore The specimen of Orbilia fimicola was studied and and conidial form. compared with the original description. The mor? Key Words: Arthrobotrys, nematophagy, Orbilia phology of the Massachusetts collection agrees with the original description; diagnostic features are shown in Figs. -
The Fungi Constitute a Major Eukary- Members of the Monophyletic Kingdom Fungi ( Fig
American Journal of Botany 98(3): 426–438. 2011. T HE FUNGI: 1, 2, 3 … 5.1 MILLION SPECIES? 1 Meredith Blackwell 2 Department of Biological Sciences; Louisiana State University; Baton Rouge, Louisiana 70803 USA • Premise of the study: Fungi are major decomposers in certain ecosystems and essential associates of many organisms. They provide enzymes and drugs and serve as experimental organisms. In 1991, a landmark paper estimated that there are 1.5 million fungi on the Earth. Because only 70 000 fungi had been described at that time, the estimate has been the impetus to search for previously unknown fungi. Fungal habitats include soil, water, and organisms that may harbor large numbers of understudied fungi, estimated to outnumber plants by at least 6 to 1. More recent estimates based on high-throughput sequencing methods suggest that as many as 5.1 million fungal species exist. • Methods: Technological advances make it possible to apply molecular methods to develop a stable classifi cation and to dis- cover and identify fungal taxa. • Key results: Molecular methods have dramatically increased our knowledge of Fungi in less than 20 years, revealing a mono- phyletic kingdom and increased diversity among early-diverging lineages. Mycologists are making signifi cant advances in species discovery, but many fungi remain to be discovered. • Conclusions: Fungi are essential to the survival of many groups of organisms with which they form associations. They also attract attention as predators of invertebrate animals, pathogens of potatoes and rice and humans and bats, killers of frogs and crayfi sh, producers of secondary metabolites to lower cholesterol, and subjects of prize-winning research. -
The Phylogeny of Plant and Animal Pathogens in the Ascomycota
Physiological and Molecular Plant Pathology (2001) 59, 165±187 doi:10.1006/pmpp.2001.0355, available online at http://www.idealibrary.com on MINI-REVIEW The phylogeny of plant and animal pathogens in the Ascomycota MARY L. BERBEE* Department of Botany, University of British Columbia, 6270 University Blvd, Vancouver, BC V6T 1Z4, Canada (Accepted for publication August 2001) What makes a fungus pathogenic? In this review, phylogenetic inference is used to speculate on the evolution of plant and animal pathogens in the fungal Phylum Ascomycota. A phylogeny is presented using 297 18S ribosomal DNA sequences from GenBank and it is shown that most known plant pathogens are concentrated in four classes in the Ascomycota. Animal pathogens are also concentrated, but in two ascomycete classes that contain few, if any, plant pathogens. Rather than appearing as a constant character of a class, the ability to cause disease in plants and animals was gained and lost repeatedly. The genes that code for some traits involved in pathogenicity or virulence have been cloned and characterized, and so the evolutionary relationships of a few of the genes for enzymes and toxins known to play roles in diseases were explored. In general, these genes are too narrowly distributed and too recent in origin to explain the broad patterns of origin of pathogens. Co-evolution could potentially be part of an explanation for phylogenetic patterns of pathogenesis. Robust phylogenies not only of the fungi, but also of host plants and animals are becoming available, allowing for critical analysis of the nature of co-evolutionary warfare. Host animals, particularly human hosts have had little obvious eect on fungal evolution and most cases of fungal disease in humans appear to represent an evolutionary dead end for the fungus. -
Castor, Pollux and Life Histories of Fungi'
Mycologia, 89(1), 1997, pp. 1-23. ? 1997 by The New York Botanical Garden, Bronx, NY 10458-5126 Issued 3 February 1997 Castor, Pollux and life histories of fungi' Donald H. Pfister2 1982). Nonetheless we have been indulging in this Farlow Herbarium and Library and Department of ritual since the beginning when William H. Weston Organismic and Evolutionary Biology, Harvard (1933) gave the first presidential address. His topic? University, Cambridge, Massachusetts 02138 Roland Thaxter of course. I want to take the oppor- tunity to talk about the life histories of fungi and especially those we have worked out in the family Or- Abstract: The literature on teleomorph-anamorph biliaceae. As a way to focus on the concepts of life connections in the Orbiliaceae and the position of histories, I invoke a parable of sorts. the family in the Leotiales is reviewed. 18S data show The ancient story of Castor and Pollux, the Dios- that the Orbiliaceae occupies an isolated position in curi, goes something like this: They were twin sons relationship to the other members of the Leotiales of Zeus, arising from the same egg. They carried out which have so far been studied. The following form many heroic exploits. They were inseparable in life genera have been studied in cultures derived from but each developed special individual skills. Castor ascospores of Orbiliaceae: Anguillospora, Arthrobotrys, was renowned for taming and managing horses; Pol- Dactylella, Dicranidion, Helicoon, Monacrosporium, lux was a boxer. Castor was killed and went to the Trinacrium and conidial types that are referred to as being Idriella-like. -
2 the Numbers Behind Mushroom Biodiversity
15 2 The Numbers Behind Mushroom Biodiversity Anabela Martins Polytechnic Institute of Bragança, School of Agriculture (IPB-ESA), Portugal 2.1 Origin and Diversity of Fungi Fungi are difficult to preserve and fossilize and due to the poor preservation of most fungal structures, it has been difficult to interpret the fossil record of fungi. Hyphae, the vegetative bodies of fungi, bear few distinctive morphological characteristicss, and organisms as diverse as cyanobacteria, eukaryotic algal groups, and oomycetes can easily be mistaken for them (Taylor & Taylor 1993). Fossils provide minimum ages for divergences and genetic lineages can be much older than even the oldest fossil representative found. According to Berbee and Taylor (2010), molecular clocks (conversion of molecular changes into geological time) calibrated by fossils are the only available tools to estimate timing of evolutionary events in fossil‐poor groups, such as fungi. The arbuscular mycorrhizal symbiotic fungi from the division Glomeromycota, gen- erally accepted as the phylogenetic sister clade to the Ascomycota and Basidiomycota, have left the most ancient fossils in the Rhynie Chert of Aberdeenshire in the north of Scotland (400 million years old). The Glomeromycota and several other fungi have been found associated with the preserved tissues of early vascular plants (Taylor et al. 2004a). Fossil spores from these shallow marine sediments from the Ordovician that closely resemble Glomeromycota spores and finely branched hyphae arbuscules within plant cells were clearly preserved in cells of stems of a 400 Ma primitive land plant, Aglaophyton, from Rhynie chert 455–460 Ma in age (Redecker et al. 2000; Remy et al. 1994) and from roots from the Triassic (250–199 Ma) (Berbee & Taylor 2010; Stubblefield et al. -
2 Pezizomycotina: Pezizomycetes, Orbiliomycetes
2 Pezizomycotina: Pezizomycetes, Orbiliomycetes 1 DONALD H. PFISTER CONTENTS 5. Discinaceae . 47 6. Glaziellaceae. 47 I. Introduction ................................ 35 7. Helvellaceae . 47 II. Orbiliomycetes: An Overview.............. 37 8. Karstenellaceae. 47 III. Occurrence and Distribution .............. 37 9. Morchellaceae . 47 A. Species Trapping Nematodes 10. Pezizaceae . 48 and Other Invertebrates................. 38 11. Pyronemataceae. 48 B. Saprobic Species . ................. 38 12. Rhizinaceae . 49 IV. Morphological Features .................... 38 13. Sarcoscyphaceae . 49 A. Ascomata . ........................... 38 14. Sarcosomataceae. 49 B. Asci. ..................................... 39 15. Tuberaceae . 49 C. Ascospores . ........................... 39 XIII. Growth in Culture .......................... 50 D. Paraphyses. ........................... 39 XIV. Conclusion .................................. 50 E. Septal Structures . ................. 40 References. ............................. 50 F. Nuclear Division . ................. 40 G. Anamorphic States . ................. 40 V. Reproduction ............................... 41 VI. History of Classification and Current I. Introduction Hypotheses.................................. 41 VII. Growth in Culture .......................... 41 VIII. Pezizomycetes: An Overview............... 41 Members of two classes, Orbiliomycetes and IX. Occurrence and Distribution .............. 41 Pezizomycetes, of Pezizomycotina are consis- A. Parasitic Species . ................. 42 tently shown -
Phylogenomic Evolutionary Surveys of Subtilase Superfamily Genes in Fungi
www.nature.com/scientificreports OPEN Phylogenomic evolutionary surveys of subtilase superfamily genes in fungi Received: 22 September 2016 Juan Li, Fei Gu, Runian Wu, JinKui Yang & Ke-Qin Zhang Accepted: 28 February 2017 Subtilases belong to a superfamily of serine proteases which are ubiquitous in fungi and are suspected Published: 30 March 2017 to have developed distinct functional properties to help fungi adapt to different ecological niches. In this study, we conducted a large-scale phylogenomic survey of subtilase protease genes in 83 whole genome sequenced fungal species in order to identify the evolutionary patterns and subsequent functional divergences of different subtilase families among the main lineages of the fungal kingdom. Our comparative genomic analyses of the subtilase superfamily indicated that extensive gene duplications, losses and functional diversifications have occurred in fungi, and that the four families of subtilase enzymes in fungi, including proteinase K-like, Pyrolisin, kexin and S53, have distinct evolutionary histories which may have facilitated the adaptation of fungi to a broad array of life strategies. Our study provides new insights into the evolution of the subtilase superfamily in fungi and expands our understanding of the evolution of fungi with different lifestyles. To survive, fungi depend on their ability to harvest nutrients from living or dead organic materials. The eco- logical diversification of fungi is profoundly affected by the array of enzymes they secrete to help them obtain such nutrients. Thus, the differences in their secreted enzymes can have a significant impact on their abilities to colonize plants and animals1. Among these enzymes, a superfamily of serine proteases named subtilases, ubiq- uitous in fungi, is suspected of having distinct functional properties which allowed fungi adapt to different eco- logical niches. -
Orbiliaceae from Thailand
Mycosphere 9(1): 155–168 (2018) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/9/1/5 Copyright © Guizhou Academy of Agricultural Sciences Orbiliaceae from Thailand Ekanayaka AH1,2, Hyde KD1,2, Jones EBG3, Zhao Q1 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, 50200, Thailand Ekanayaka AH, Hyde KD, Jones EBG, Zhao Q 2018 – Orbiliaceae from Thailand. Mycosphere 9(1), 155–168, Doi 10.5943/mycosphere/9/1/5 Abstract The family Orbiliaceae is characterized by small, yellowish, sessile to sub-stipitate apothecia, inoperculate asci and asymmetrical globose to fusoid ascospores. Morphological and phylogenetic studies were carried out on new collections of Orbiliaceae from Thailand and revealed Hyalorbilia erythrostigma, Hyalorbilia inflatula, Orbilia stipitata sp. nov., Orbilia leucostigma and Orbilia caudata. Our new species is confirmed to be divergent from other Orbiliaceae species based on morphological examination and molecular phylogenetic analyses of ITS and LSU sequence data. Descriptions and figures are provided for the taxa which are also compared with allied taxa. Key words – apothecia – discomycetes – inoperculate – phylogeny – taxonomy Introduction The family Orbiliaceae was established by Nannfeldt (1932). Previously, this family has been treated as a member of Leotiomycetes (Korf 1973, Spooner 1987) and Eriksson et al. (2003) transferred this family into a new class Orbiliomycetes. The recent studies on this class include Yu et al. (2011), Guo et al. -
MYCOTAXON Volume 91, Pp
MYCOTAXON Volume 91, pp. 185–192 January–March 2005 A new species of Dactylella and its teleomorph MINGHE MO, WEI ZHOU, YING HUANG, ZEFEN YU & KEQIN ZHANG* [email protected] Laboratory for Conservation and Utilization of Bioresources Yunnan University, Kunming 650091, P.R. China Abstract— Dactylella lignatilis, a new species, is described as the anamorph of an unidentified species of the genus Hyalorbilia. The fungus produces spindle-shaped to cylindrical conidia with 1-6 septa (usually 3-4). The conidia are 25-51 µm long (×=41), 2.5-6.3 µm wide (×=4.8), and are solitarily borne on extensively ramified conidiophores. The fungus fails to trap nematodes on water agar medium when challenged with nematodes. Keywords—anamorph-teleomorph connection Introduction The fungi of Orbiliaceae Nannf. show cup-shaped ascomata and usually occur in nature on substrates that are either continually moist or periodically dry out. Traditionally, the Orbiliaceae was placed within the Helotiales Nannf. and originally included three genera, Orbilia Fr., Hyalinia Boud. and Patinella Sacc. (Nannfeldt 1932). However, in the opinion of Spooner (1987), Patinella was to be misplaced in Orbiliaceae and the genus Habrostictis Fuckel should be included in the family. Furthermore, a critical analysis of the combination of morphological characters showed that Habrostictis and Hyalinia were synonymized with Orbilia (Baral 1994). Molecular evidence proved that the Orbiliaceae are not closely related to the Helotiales and now only two genera, Orbilia and Hyalorbilia Baral & G. Marson, were accepted for which a new class Orbiliomycetes was created (Eriksson et al. 2003). Many fungi have life cycles that include both sexual states (teleomorphs) and asexual states (anamorphs), and these may legitimately be given separate names (Hennebert & Weresub 1977, Weresub & Hennebert 1979). -
A Reevaluation of Predatory Orbiliaceous Fungi. II. a New Generic Concept
©Verlag Ferdinand Berger & Söhne Ges.m.b.H., Horn, Austria, download unter www.biologiezentrum.at A reevaluation of predatory orbiliaceous fungi. II. A new generic concept Markus Scholler1, Gregor Hagedorn2 & A. Rubner1 Fachrichtung Biologie, Mykologisches Labor, Universität Greifswald, Jahn-Str. 15, 17487 Greifswald, Germany 2Institut für Pflanzenvirologie, Mikrobiologie und Biologische Sicherheit, Biologische Bundesanstalt für Land- und Forstwirtschaft, Königin-Luise-Str. 19, 14195 Berlin, Germany M. Scholler, G. Hagedorn & A. Rubner (1999). A reevaluation of predatory orbiliaceous fungi. II. A new generic concept. - Sydowia 51(1): 89-113. A new genus concept is proposed for predatory anamorphic Orbiliaceae in which the trapping device is the main morphological criterion for the delimitation of the genera. Molecular, ecological, physiological, biological, and further mor- phological features are taken into account as well. Following the groups identified by Hagedorn & Scholler (1999), these predatory fungi are divided into four genera: Arthrobotrys Corda forming adhesive networks, Drechslerella Subram. forming constricting rings, Dactylellina M. Morelet forming stalked adhesive knobs, and Gamsylella gen. nov. for species producing adhesive columns and unstalked knobs. Eighty-two species are accepted, for 51 of which new combinations are proposed. Keywords: Nematophagous fungi, Orbiliaceae, Arlhrobolrys, Daclylellina, Drechslerella, Gamsylella gen. nov, trapping devices, taxonomy. Present generic and phylogenetic concepts for predatory -
Orbilia Laevimarginata Sp. Nov. and Its Asexual Morph
Phytotaxa 203 (3): 245–253 ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ PHYTOTAXA Copyright © 2015 Magnolia Press Article ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.203.3.3 Orbilia laevimarginata sp. nov. and its asexual morph YING ZHANG1, XIAOXIA HE1, HANS-OTTO BARAL2, MIN QIAO1, MICHAEL WEIβ3, BIN LIU4, KE-QIN ZHANG1 & ZEFEN YU1* 1Laboratory for Conservation and Utilization of Bio-resources and Key Laboratory for Microbial Resources of the Ministry of Education, Yunnan University, Kunming 650091, P.R. China 2Blaihofstraße 42, D-72074 Tübingen (Germany) 3Department of Biology, University of Tübingen (Germany) 4 Institute of Applied Microbiology, Guangxi University, Nanning 530005, P.R. China Abstract O. laevimarginata is here described as a new species, and also its asexual morph could not be assigned to an existing taxon. Anamorphic strains were obtained from three teleomorph specimens which were collected at different sites and dates. The anamorph is characterized by cylindric-ellipsoid to oblong conidia, mainly 1-septate, growing either singly or mostly from 2–10 denticles in a capitate arrangement on the tip of conidiophores. These morphological characters are similar to those of the nematophagous anamorph genus Arthrobotrys, but the present isolates lack the ability to produce any trapping devices when contacting with nematodes. Phylogenetic analysis inferred from ITS rDNA sequences on different groups within Or- bilia showed that the isolates of O. laevimarginata clustered together in a clade separate from Orbilia crenatomarginata (= Hyalinia crystallina). The two species are close to O. scolecospora and an undescribed species, which all have a crenulate to dentate apothecial margin composed of solid glassy processes. -
Redalyc.DIVERSITY of SAPROTROPHIC ANAMORPHIC
Darwiniana ISSN: 0011-6793 [email protected] Instituto de Botánica Darwinion Argentina Allegrucci, Natalia; Cabello, Marta N.; Arambarri, Angélica M. DIVERSITY OF SAPROTROPHIC ANAMORPHIC ASCOMYCETES FROM NATIVE FORESTS IN ARGENTINA: AN UPDATED REVIEW Darwiniana, vol. 47, núm. 1, 2009, pp. 108-124 Instituto de Botánica Darwinion Buenos Aires, Argentina Available in: http://www.redalyc.org/articulo.oa?id=66912085007 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative DARWINIANA 47(1): 108-124. 2009 ISSN 0011-6793 DIVERSITY OF SAPROTROPHIC ANAMORPHIC ASCOMYCETES FROM NATIVE FORESTS IN ARGENTINA: AN UPDATED REVIEW Natalia Allegrucci, Marta N. Cabello & Angélica M. Arambarri Instituto de Botánica Spegazzini, Facultad de Ciencias Naturales y Museo, Universidad Nacional de La Plata, 1900 La Plata, Provincia de Buenos Aires, Argentina; [email protected] (author for correspondence). Abstract. Allegrucci, N.; M. N. Cabello & A. M. Arambarri. 2009. Diversity of Saprotrophic Anamorphic Ascomy- cetes from native forests in Argentina: an updated review. Darwiniana 47(1): 108-124. Eight regions of native forests have been recognized in Argentina: Chaco forest, Misiones rain forest, Tucumán-Bolivia forest (Yunga), Andean-Patagonian forest, “Monte”, “Espinal”, fluvial forests of the Paraguay, Paraná and Uruguay rivers, and “Talares” in the Pampean region. We reviewed the available data concerning biodiversity of saprotrophic micro-fungi (anamorphic Ascomycota) in those native forests from Argentina, from the earliest collections, done by Spegazzini, to present. Among the above mentioned regions most studies on saprotrophic micro-fungi concentrates on the Andean-Pata- gonian forest, the fluvial forests of the Paraguay, Paraná and Uruguay rivers and the “Talares”, in the Pampean region.