Research Article
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Phylogenomics of the Major Tropical Plant Family Annonaceae Using Targeted Enrichment of Nuclear Genes
ORIGINAL RESEARCH published: 09 January 2019 doi: 10.3389/fpls.2018.01941 Phylogenomics of the Major Tropical Plant Family Annonaceae Using Targeted Enrichment of Nuclear Genes Thomas L. P. Couvreur 1*†, Andrew J. Helmstetter 1†, Erik J. M. Koenen 2, Kevin Bethune 1, Rita D. Brandão 3, Stefan A. Little 4, Hervé Sauquet 4,5 and Roy H. J. Erkens 3 1 IRD, UMR DIADE, Univ. Montpellier, Montpellier, France, 2 Institute of Systematic Botany, University of Zurich, Zurich, Switzerland, 3 Maastricht Science Programme, Maastricht University, Maastricht, Netherlands, 4 Ecologie Systématique Evolution, Univ. Paris-Sud, CNRS, AgroParisTech, Université-Paris Saclay, Orsay, France, 5 National Herbarium of New South Wales (NSW), Royal Botanic Gardens and Domain Trust, Sydney, NSW, Australia Edited by: Jim Leebens-Mack, University of Georgia, United States Targeted enrichment and sequencing of hundreds of nuclear loci for phylogenetic Reviewed by: reconstruction is becoming an important tool for plant systematics and evolution. Eric Wade Linton, Central Michigan University, Annonaceae is a major pantropical plant family with 110 genera and ca. 2,450 species, United States occurring across all major and minor tropical forests of the world. Baits were designed Mario Fernández-Mazuecos, by sequencing the transcriptomes of five species from two of the largest Annonaceae Real Jardín Botánico (RJB), Spain Angelica Cibrian-Jaramillo, subfamilies. Orthologous loci were identified. The resulting baiting kit was used to Centro de Investigación y de Estudios reconstruct phylogenetic relationships at two different levels using concatenated and Avanzados (CINVESTAV), Mexico gene tree approaches: a family wide Annonaceae analysis sampling 65 genera and *Correspondence: Thomas L. P. -
Evolution of Angiosperm Pollen. 7. Nitrogen-Fixing Clade1
Evolution of Angiosperm Pollen. 7. Nitrogen-Fixing Clade1 Authors: Jiang, Wei, He, Hua-Jie, Lu, Lu, Burgess, Kevin S., Wang, Hong, et. al. Source: Annals of the Missouri Botanical Garden, 104(2) : 171-229 Published By: Missouri Botanical Garden Press URL: https://doi.org/10.3417/2019337 BioOne Complete (complete.BioOne.org) is a full-text database of 200 subscribed and open-access titles in the biological, ecological, and environmental sciences published by nonprofit societies, associations, museums, institutions, and presses. Your use of this PDF, the BioOne Complete website, and all posted and associated content indicates your acceptance of BioOne’s Terms of Use, available at www.bioone.org/terms-of-use. Usage of BioOne Complete content is strictly limited to personal, educational, and non - commercial use. Commercial inquiries or rights and permissions requests should be directed to the individual publisher as copyright holder. BioOne sees sustainable scholarly publishing as an inherently collaborative enterprise connecting authors, nonprofit publishers, academic institutions, research libraries, and research funders in the common goal of maximizing access to critical research. Downloaded From: https://bioone.org/journals/Annals-of-the-Missouri-Botanical-Garden on 01 Apr 2020 Terms of Use: https://bioone.org/terms-of-use Access provided by Kunming Institute of Botany, CAS Volume 104 Annals Number 2 of the R 2019 Missouri Botanical Garden EVOLUTION OF ANGIOSPERM Wei Jiang,2,3,7 Hua-Jie He,4,7 Lu Lu,2,5 POLLEN. 7. NITROGEN-FIXING Kevin S. Burgess,6 Hong Wang,2* and 2,4 CLADE1 De-Zhu Li * ABSTRACT Nitrogen-fixing symbiosis in root nodules is known in only 10 families, which are distributed among a clade of four orders and delimited as the nitrogen-fixing clade. -
Phylogeny, Molecular Dating, and Floral Evolution of Magnoliidae (Angiospermae)
UNIVERSITÉ PARIS-SUD ÉCOLE DOCTORALE : SCIENCES DU VÉGÉTAL Laboratoire Ecologie, Systématique et Evolution DISCIPLINE : BIOLOGIE THÈSE DE DOCTORAT Soutenue le 11/04/2014 par Julien MASSONI Phylogeny, molecular dating, and floral evolution of Magnoliidae (Angiospermae) Composition du jury : Directeur de thèse : Hervé SAUQUET Maître de Conférences (Université Paris-Sud) Rapporteurs : Susanna MAGALLÓN Professeur (Universidad Nacional Autónoma de México) Thomas HAEVERMANS Maître de Conférences (Muséum national d’Histoire Naturelle) Examinateurs : Catherine DAMERVAL Directeur de Recherche (CNRS, INRA) Michel LAURIN Directeur de Recherche (CNRS, Muséum national d’Histoire Naturelle) Florian JABBOUR Maître de Conférences (Muséum national d’Histoire Naturelle) Michael PIRIE Maître de Conférences (Johannes Gutenberg Universität Mainz) Membres invités : Hervé SAUQUET Maître de Conférences (Université Paris-Sud) Remerciements Je tiens tout particulièrement à remercier mon directeur de thèse et ami Hervé Sauquet pour son encadrement, sa gentillesse, sa franchise et la confiance qu’il m’a accordée. Cette relation a immanquablement contribuée à ma progression humaine et scientifique. La pratique d’une science sans frontière est la plus belle chose qu’il m’ait apportée. Ce fut enthousiasmant, très fructueux, et au-delà de mes espérances. Ce mode de travail sera le mien pour la suite de ma carrière. Je tiens également à remercier ma copine Anne-Louise dont le soutien immense a contribué à la réalisation de ce travail. Elle a vécu avec patience et attention les moments d’enthousiasmes et de doutes. Par la même occasion, je remercie ma fille qui a eu l’heureuse idée de ne pas naître avant la fin de la rédaction de ce manuscrit. -
Obtención De Diisoespintanol Y Berenjenol Del Subextracto De
OBTENCIÓN DE DIISOESPINTANOL Y BERENJENOL DEL SUBEXTRACTO DE DICLOROMETANO DE LAS HOJAS DE Oxandra xylopioides Y REVISIÓN BIBLIOGRÁFICA SOBRE ACTIVIDADES BIOLÓGICAS DE LA FAMILIA ANNONACEAE Presentado por: LUCAS ENRIQUE HUMÁNEZ GALINDO Director: ALBERTO ANTONIO ANGULO ORTIZ M.Sc. UNIVERSIDAD DE CÓRDOBA FACULTAD DE CIENCIAS BÁSICAS DEPARTAMENTO DE QUÍMICA MONTERÍA 2020 1 OBTENCIÓN DE DIISOESPINTANOL Y BERENJENOL DEL SUBEXTRACTO DE DICLOROMETANO DE LAS HOJAS DE Oxandra xylopioides Y REVISIÓN BIBLIOGRÁFICA SOBRE ACTIVIDADES BIOLÓGICAS DE LA FAMILIA ANNONACEAE Trabajo de grado para obtener el título de Químico Presentado por: LUCAS ENRIQUE HUMÁNEZ GALINDO Director: ALBERTO ANTONIO ANGULO ORTIZ M.Sc. UNIVERSIDAD DE CÓRDOBA FACULTAD DE CIENCIAS BÁSICAS DEPARTAMENTO DE QUÍMICA MONTERÍA 2020 2 Nota de Aceptación El informe de grado titulado “OBTENCIÓN DE DIISOESPINTANOL Y BERENJENOL DEL SUBESTRACTO DE DICLOROMETANO DE LAS HOJAS DE Oxandra xylopioides Y REVISIÓN BIBLIOGRÁFICA SOBRE LAS ACTIVIDADES BIOLÓGICAS DE LA FAMILIA ANNONACEAE” realizado por el estudiante LUCAS ENRIQUE HUMANEZ GALINDO, cumple con los requisitos exigidos por la facultad de ciencias básicas para optar el título de químico, el cual fue aprobado. Director del trabajo de grado. ALBERTO ANTONIO ANGULO ORTIZ M.Sc. Jurado. ORLANDO JOSE PASTRANA FRANCO Jurado. FERNIS JOSE MARIN SEVERICHE 3 AGRADECIMIENTO A Dios, por permitirme llegar a donde estoy. A mis padres, Nuvia Esther Galindo Ortega y Luis Enrique Humánez Peña, por ser mi ayuda incondicional, por apoyarme en todo este camino, gracias a ellos por todo lo que soy y lo que tengo hasta hoy. A la Universidad de Córdoba, al grupo de investigación (química de los productos naturales) y a mis jurados, Orlando Pastrana y Fernis Marin. -
Phylogenomics of the Major Tropical Plant Family Annonaceae Using Targeted Enrichment of Nuclear Genes
bioRxiv preprint doi: https://doi.org/10.1101/440925; this version posted October 11, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. Phylogenomics of the major tropical plant family Annonaceae using targeted enrichment of nuclear genes Thomas L.P. Couvreur1,*+, Andrew J. Helmstetter1,+, Erik J.M. Koenen2, Kevin Bethune1, Rita D. Brandão3, Stefan Little4, Hervé Sauquet4,5, Roy H.J. Erkens3 1 IRD, UMR DIADE, Univ. Montpellier, Montpellier, France 2 Institute of Systematic Botany, University of Zurich, Zürich, Switzerland 3 Maastricht University, Maastricht Science Programme, P.O. Box 616, 6200 MD Maastricht, The Netherlands 4 Ecologie Systématique Evolution, Univ. Paris-Sud, CNRS, AgroParisTech, Université-Paris Saclay, 91400, Orsay, France 5 National Herbarium of New South Wales (NSW), Royal Botanic Gardens and Domain Trust, Sydney, Australia * [email protected] + authors contributed equally Abstract Targeted enrichment and sequencing of hundreds of nuclear loci for phylogenetic reconstruction is becoming an important tool for plant systematics and evolution. Annonaceae is a major pantropical plant family with 109 genera and ca. 2450 species, occurring across all major and minor tropical forests of the world. Baits were designed by sequencing the transcriptomes of five species from two of the largest Annonaceae subfamilies. Orthologous loci were identified. The resulting baiting kit was used to reconstruct phylogenetic relationships at two different levels using concatenated and gene tree approaches: a family wide Annonaceae analysis sampling 65 genera and a species level analysis of tribe Piptostigmateae sampling 29 species with multiple individuals per species. -
Revision and New Species of the African Genus Mischogyne (Annonaceae)
This is a repository copy of Revision and new species of the African genus Mischogyne (Annonaceae). White Rose Research Online URL for this paper: https://eprints.whiterose.ac.uk/140419/ Version: Published Version Article: Gosline, George, Marshall, Andrew Robert orcid.org/0000-0003-4877-1018 and Larridon, Isabel (2019) Revision and new species of the African genus Mischogyne (Annonaceae). Kew Bulletin. ISSN 0075-5974 https://doi.org/10.1007/s12225-019-9804-7 Reuse Items deposited in White Rose Research Online are protected by copyright, with all rights reserved unless indicated otherwise. They may be downloaded and/or printed for private study, or other acts as permitted by national copyright laws. The publisher or other rights holders may allow further reproduction and re-use of the full text version. This is indicated by the licence information on the White Rose Research Online record for the item. Takedown If you consider content in White Rose Research Online to be in breach of UK law, please notify us by emailing [email protected] including the URL of the record and the reason for the withdrawal request. [email protected] https://eprints.whiterose.ac.uk/ KEW BULLETIN (2019) 74:28 ISSN: 0075-5974 (print) DOI 10.1007/S12225-019-9804-7 ISSN: 1874-933X (electronic) Revision and new species of the African genus Mischogyne (Annonaceae) George Gosline1 , Andrew R. Marshall2,3,4 & Isabel Larridon1,5 Summary. Mischogyne (Annonaceae, tribe Monodoreae) is a genus of small- to medium-sized tropical trees and shrubs. It is characterised by a combination of: (1) stamens and carpels on a more or less extended torus; (2) carpels divergent from each other at the apex of the torus above the anthers; (3) anthers linear and anther connectives not expanded above the thecae; (4) inflorescences extra-axillary (or sometimes terminal in M. -
TANZANIA: COUNTRY REPORT to the FAO INTERNATIONAL TECHNICAL CONFERENCE on PLANT GENETIC RESOURCES (Leipzig 1996)
TANZANIA: COUNTRY REPORT TO THE FAO INTERNATIONAL TECHNICAL CONFERENCE ON PLANT GENETIC RESOURCES (Leipzig 1996) Prepared by: G. M. Mitawa W. Y. F. Marandu Dar-es-Salaam, December 1995 TANZANIA country report 2 Note by FAO This Country Report has been prepared by the national authorities in the context of the preparatory process for the FAO International Technical Conference on Plant Genetic Resources, Leipzig, Germany, 17-23 June 1996. The Report is being made available by FAO as requested by the International Technical Conference. However, the report is solely the responsibility of the national authorities. The information in this report has not been verified by FAO, and the opinions expressed do not necessarily represent the views or policy of FAO. The designations employed and the presentation of the material and maps in this document do not imply the expression of any option whatsoever on the part of the Food and Agriculture Organization of the United Nations concerning the legal status of any country, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. TANZANIA country report 3 Table of Contents CHAPTER 1 INTRODUCTION TO TANZANIA AND ITS AGRICULTURAL SECTOR 6 1.1 LOCATION 6 1.2 PHYSIOGRAPHY 6 1.3 CLIMATE 7 1.4 VEGETATION 7 1.5 POPULATION 8 1.6 THE MAIN FARMING SYSTEMS 8 1.7 THE AGRICULTURAL SECTOR 8 1.8 SEED SUPPLY SYSTEM 9 1.9 TRENDS IN PLANT PRODUCTION 9 CHAPTER 2 INDIGENOUS PLANT GENETIC RESOURCES 13 2.1 INTRODUCTION 13 2.2 FOREST GENETIC RESOURCES 13 2.2.1 Status of important forest -
Revealing the Secrets of African Annonaceae : Systematics, Evolution and Biogeography of the Syncarpous Genera Isolona and Monod
Revealing the Secrets of African Annonaceae Systematics, Evolution and Biogeography of the Syncarpous Genera Isolona and Monodora Thomas L.P. Couvreur Promotor: Prof.dr. Marc S.M. Sosef Hoogleraar Biosystematiek Wageningen Universiteit Co-promotoren: Dr. James E. Richardson Higher Scientific Officer, Tropical Botany Royal Botanic Garden, Edinburgh, United Kingdom Dr. Lars W. Chatrou Universitair Docent, leerstoelgroep Biosystematiek Wageningen Universiteit Promotiecommissie: Prof.dr.ir. Jaap Bakker (Wageningen Universiteit) Prof.dr. Erik F. Smets (Universiteit Leiden) Prof.dr. Paul J.M. Maas (Universiteit Utrecht) Prof.dr. David Johnson (Ohio Wesleyan University, Delaware, USA) Dit onderzoek is uitgevoerd binnen de onderzoekschool Biodiversiteit Revealing the Secrets of African Annonaceae Systematics, Evolution and Biogeography of the Syncarpous Genera Isolona and Monodora Thomas L.P. Couvreur Proefschrift ter verkrijging van de graad van doctor op gezag van de rector magnificus van Wageningen Universiteit Prof.dr. M.J. Kropff in het openbaar te verdedigen op maandag 21 april 2008 des namiddags te vier uur in de Aula Thomas L.P. Couvreur (2008) Revealing the Secrets of African Annonaceae: Systematics, Evolution and Biogeography of the Syncarpous Genera Isolona and Monodora PhD thesis Wageningen University, The Netherlands With references – with summaries in English and Dutch. ISBN 978-90-8504-924-1 to my parents Contents CHAPTER 1: General Introduction 1 CHAPTER 2: Substitution Rate Prior Influences Posterior Mapping of Discrete Morphological -
Ecosystem: Eastern Arc Mountains & Coastal Forests of Tanzania & Kenya
ECOSYSTEM PROFILE EASTERN ARC MOUNTAINS & COASTAL FORESTS OF TANZANIA & KENYA Final version July 31, 2003 (updated: march 2005) Prepared by: Conservation International International Centre of Insect Physiology and Ecology In collaboration with: Nature Kenya Wildlife Conservation Society of Tanzania With the technical support of: Centre for Applied Biodiversity Science - Conservation International East African Herbarium National Museums of Kenya Missouri Botanical Garden Tanzania Forest Conservation Group Zoology Department, University of Dar es Salaam WWF Eastern Africa Regional Programme Office WWF United States And a special team for this ecosystem profile: Neil Burgess Tom Butynski Ian Gordon Quentin Luke Peter Sumbi John Watkin Assisted by experts and contributors: KENYA Hamdan Sheha Idrissa Perkin Andrew Barrow Edmund Howell Kim Verberkmoes Anne Marie Gakahu Chris Kajuni A R Ward Jessica Githitho Anthony Kilahama Felician Kabii Tom Kafumu George R BELGIUM Kimbwereza Elly D Kabugi Hewson Lens Luc Kanga Erustus Lejora Inyasi A.V. Matiku Paul Lulandala Luther Mbora David Mallya Felix UK Mugo Robinson Mariki Stephen Burgess Neil Ndugire Naftali Masayanyika Sammy Odhiambo Peter Mathias Lema USA Thompson Hazell Milledge Simon Brooks Thomas Wandago Ben Mlowe Edward Gereau Roy Mpemba Erastp Langhammer Penny Msuya Charles TANZANIA Ocker Donnell Mungaya Elias Sebunya Kaddu Baldus Rolf D Mwasumbi Leonard Bhukoli Alice Struhsaker Tom Salehe John Wieczkowski Julie Doggart Nike Stodsrod Jan Erik Howlett David Tapper Elizabeth Hewawasam Indu Offninga -
Angiosperms) Julien Massoni1*, Thomas LP Couvreur2,3 and Hervé Sauquet1
Massoni et al. BMC Evolutionary Biology (2015) 15:49 DOI 10.1186/s12862-015-0320-6 RESEARCH ARTICLE Open Access Five major shifts of diversification through the long evolutionary history of Magnoliidae (angiosperms) Julien Massoni1*, Thomas LP Couvreur2,3 and Hervé Sauquet1 Abstract Background: With 10,000 species, Magnoliidae are the largest clade of flowering plants outside monocots and eudicots. Despite an ancient and rich fossil history, the tempo and mode of diversification of Magnoliidae remain poorly known. Using a molecular data set of 12 markers and 220 species (representing >75% of genera in Magnoliidae) and six robust, internal fossil age constraints, we estimate divergence times and significant shifts of diversification across the clade. In addition, we test the sensitivity of magnoliid divergence times to the choice of relaxed clock model and various maximum age constraints for the angiosperms. Results: Compared with previous work, our study tends to push back in time the age of the crown node of Magnoliidae (178.78-126.82 million years, Myr), and of the four orders, Canellales (143.18-125.90 Myr), Piperales (158.11-88.15 Myr), Laurales (165.62-112.05 Myr), and Magnoliales (164.09-114.75 Myr). Although families vary in crown ages, Magnoliidae appear to have diversified into most extant families by the end of the Cretaceous. The strongly imbalanced distribution of extant diversity within Magnoliidae appears to be best explained by models of diversification with 6 to 13 shifts in net diversification rates. Significant increases are inferred within Piperaceae and Annonaceae, while the low species richness of Calycanthaceae, Degeneriaceae, and Himantandraceae appears to be the result of decreases in both speciation and extinction rates. -
Acétogénines D'annonaceae Et Parkinsonismes Atypiques
Acétogénines d’Annonaceae et parkinsonismes atypiques : de la biodisponibilité de l’annonacine à l’exposition alimentaire. Natacha Bonneau To cite this version: Natacha Bonneau. Acétogénines d’Annonaceae et parkinsonismes atypiques : de la biodisponibilité de l’annonacine à l’exposition alimentaire.. Chimie analytique. Université Paris-Saclay, 2015. Français. NNT : 2015SACLS271. tel-01459289 HAL Id: tel-01459289 https://tel.archives-ouvertes.fr/tel-01459289 Submitted on 7 Feb 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. NNT : 2015SACLS271 THÈSE DE DOCTORAT DE L’UNIVERSITÉ PARIS-SACLAY PRÉPARÉE À L’UNIVERSITÉ PARIS-SUD ÉCOLE DOCTORALE n° 569 Innovation thérapeutique : du fondamental à l’appliqué Spécialité de doctorat : Chimie des substances naturelles par Natacha BONNEAU Acétogénines d’Annonaceae et parkinsonismes atypiques : de la biodisponibilité de l’annonacine à l’exposition alimentaire. Thèse présentée et soutenue à Châtenay-Malabry, le 18 décembre 2015 : Composition du jury : M. Robert Farinotti, Professeur, Université Paris-Saclay, -
Arboretum Newsletter 10
Arboretum Newsletter 10 Edwin and Frances Hunter Arboretum Palomar College Received Generous Donation From The Hunter Family The Palomar College Arboretum will be renamed the Edwin and Frances Hunter Arboretum after the cofounders of Hunter Industries in San Marcos. The Arboretum received an endowment of $500,000 from the Hunter Family Fund and Hunter Industries, makers of high quality irrigation equipment and controllers. The Hunter family came to San Marcos 35 years ago to open Hunter Industries, a global irrigation products company with 800 local employees. Ann Hunter-Welborn remembers the very moment when she decided to endow the Palomar College Arboretum in her late parent's name. While walking through the stately conifers and massive Moreton Bay and Mysore figs, she was impressed by their beauty and wanted to protect them. In addition to Palomar College, the Hunter Family Fund has supported Center Artes at Cal State San Marcos, the San Marcos School District's Fortissimo Children's Orchestra program and North County Health Services, which operates two clinics for low-income patients in San Marcos. The Hunter Family believes in the preservation of forests and greenbelts. "Palomar College is such a vital asset to our community, and having walked through the arboretum, it's clear this wonderful garden is important to students and is a value to the community. Green spaces are crucial to the future of our world." said Ann Hunter-Welborn. Improvements to the Arboretum are part of Palomar's Educational Master Plan, funded in part by Proposition M, approved by voters in November 2006. It will include an irrigation system and wheelchair accessible trails throughout the Arboretum.