Mediated Activation of Estrogen Sulfotransferase
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Hormonal Regulation During Initial Berry Development in Grapevine
1 Année 2013 Thèse N° 2064 THESE pour le DOCTORAT DE L’UNIVERSITE BORDEAUX 2 Ecole Doctorale des Sciences de la Vie et de la Santé de l’Université Bordeaux-Segalen Spécialité: Biologie Végétale Hormonal regulation during initial berry development in grapevine par María Francisca Godoy Santin Née le 20 Février 1985 à Santiago, Chili Soutenue publiquement le 15 Novembre, à Pontificia Universidad Católica de Chile, Santiago, Chili Membres du Jury : Pr. Alexis KALERGIS, Universidad Católica de Chile Pr. Michael HANDFORD, University of Chile Rapporteur Pr. Claudia STANGE, University of Chile Rapportrice Pr. Loreto HOLUIGUE, Universidad Católica de Chile Examinatrice Pr. Serge DELROT, Université Victor Ségalen Bordeaux2 Examinateur Pr. Patricio ARCE-JONHSON, Universidad Católica de Chile Co-Directeur de thèse Dr. Virginie LAUVERGEAT, Université Bordeaux1 Co-Directrice de thèse 2 Acknowledgements I would like to thank my advisors Dr Patricio Arce and Dr Virginie Lauvergeat for their guidance, patience and help at every step of the way. I also want to specially acknowledge to all my labmates for their ideas, support, laughs and much more: Jenn, Xime, Amparo, Mindy, Anita, Felipe, Tomás, Susan, Mónica, Jessy, Claudia, Dani H, and everyone else who made the working place the best one ever. Special thanks to Consuelo, who guided me from the first day, and to Anibal, who has been an amazing help during these lasts years. I want to thank Nathalie Kühn for all her ideas, discussion, company and help during these experiments, where she played a fundamental part. Also, I am very grateful to my other lab across the sea, in INRA, for receiving me there: Mariam, María José, Julien, Eric, Pierre, Le, Huan, Messa, David, Fatma and all the staff for all their help. -
Summary & Conclusions
Enzymatic functionalization and degradation of natural and synthetic polymers Von der Fakultät für Mathematik, Informatik und Naturwissenschaften der RWTH Aachen University zur Erlangung des akademischen Grades einer Doktorin der Naturwissenschaften genehmigte Dissertation vorgelegt von Shohana Subrin Islam M. Sc. Biotechnologie aus Dhaka, Bangladesch Berichter: Univ. -Prof. Dr. Ulrich Schwaneberg Univ. -Prof. Dr. Lothar Elling Tag der mündlichen Prüfung: 23.01.2019 Diese Dissertation ist auf den Internetseiten der Universitätsbibliothek verfügbar. To my mom & my sister-the two persons in the world who always stand by me Table of content Table of content Table of content _______________________________________________________________ v Publications and patents ________________________________________________________ ix Abstract _____________________________________________________________________ xi 1. General introduction _______________________________________________________ 1 1.1 Enzymatic functionalization of (bio)polymers _______________________________________ 1 1.2 Enzymatic degradation of polymers _______________________________________________ 3 1.3 Protein engineering ____________________________________________________________ 5 1.3.1 Directed evolution of enzymes _________________________________________________________ 6 1.3.2 KnowVolution – Directed Evolution 2.0 __________________________________________________ 9 1.4 Aims of the dissertation _______________________________________________________ 11 2. Engineering of -
SULT1E1 Inhibits Cell Proliferation and Invasion by Activating Pparγ in Breast Cancer
Journal of Cancer 2018, Vol. 9 1078 Ivyspring International Publisher Journal of Cancer 2018; 9(6): 1078-1087. doi: 10.7150/jca.23596 Research Paper SULT1E1 inhibits cell proliferation and invasion by activating PPARγ in breast cancer Yali Xu1, Xiaoyan Lin1, Jiawen Xu1, Haiyan Jing1, Yejun Qin1, Yintao Li2 1. Department of Pathology, Shandong Provincial Hospital Affiliated to Shandong University, Jinan, Shandong, P.R. China 2. Department of Medical Oncology, Shandong Cancer Hospital and Institute, Jinan, Shandong, P.R. China Corresponding author: Yejun Qin, Department of Pathology, Shandong Provincial Hospital Affiliated to Shandong University, No. 324 Jingwu Road, Jinan, Shandong, 250021, China. Tel: +86-531-68776430. E-mail: [email protected] and Yintao Li, Department of Medical Oncology, Shandong Cancer Hospital and Institute, Shandong University, No. 440 Jiefang Road, Jinan, Shandong, 250117, China. Tel: +86-531-87984777. E-mail: [email protected] © Ivyspring International Publisher. This is an open access article distributed under the terms of the Creative Commons Attribution (CC BY-NC) license (https://creativecommons.org/licenses/by-nc/4.0/). See http://ivyspring.com/terms for full terms and conditions. Received: 2017.10.31; Accepted: 2018.01.29; Published: 2018.02.28 Abstract Sulfotransferase family 1E member 1 (SULT1E1) is known to catalyze sulfoconjugation and play a crucial role in the deactivation of estrogen homeostasis, which is involved in tumorigenesis and the progression of breast and endometrial cancers. Our previous study has shown that the protein levels of SULT1E1 were decreased in breast cancer; however, the underlying mechanism is still poorly understood. In this study, we explored the functional and molecular mechanisms by which SULT1E1 influenced breast cancer. -
Identification of Oxidative Stress-Related Proteins for Predictive Screening of Hepatotoxicity Using a Proteomic Approach
The Journal of Toxicological Sciences, 213 Vol.30, No.3, 213-227, 2005 IDENTIFICATION OF OXIDATIVE STRESS-RELATED PROTEINS FOR PREDICTIVE SCREENING OF HEPATOTOXICITY USING A PROTEOMIC APPROACH Toshinori YAMAMOTO, Rie KIKKAWA, Hiroshi YAMADA and Ikuo HORII Worldwide Safety Sciences, Pfizer Global Research & Development, Nagoya Laboratories, Pfizer Inc., 5-2 Taketoyo, Aichi 470-2393, Japan (Received January 15, 2005; Accepted April 19, 2005) ABSTRACT — We investigated the effects of three hepatotoxicants, acetaminophen (APAP), amio- darone (AD) and tetracycline (TC), on protein expression in primary cultured rat hepatocytes with toxi- coproteomic approach, which is two-dimensional gel electrophoresis (2DE) and mass spectrometry. The objectives of this study were to search for alternative toxicity biomarkers which could be detected with high sensitivity prior to the appearance of morphological changes or alterations of analytical conventional biomarkers. The related proteins in the process of cell degeneration/necrosis such as cell death, lipid metabolism and lipid/carbohydrate metabolism were mainly affected under exposure to APAP, AD and TC, respectively. Among the differentially expressed proteins, several oxidative stress-related proteins were clearly identified after 24-hr exposure, even though they were not affected for 6-hr exposure. They were glutathione peroxidase (GPX) as a down-regulated protein as well as peroxiredoxin 1 (PRX1) and peroxiredoxin 2 (PRX2) as up-regulated proteins, which are known to serve as antioxidative enzymes in cells. These findings suggested that the focused proteins, GPX and PRXs, could be utilized as biomarkers of hepatotoxicity, and they were useful for setting high throughput screening methods to assess hepato- toxicity in the early stage of drug discovery. -
For Poststroke Depression Based on Network Pharmacology and Molecular Docking
Hindawi Evidence-Based Complementary and Alternative Medicine Volume 2021, Article ID 2126967, 14 pages https://doi.org/10.1155/2021/2126967 Research Article Exploring the Mechanism of Action of Herbal Medicine (Gan-Mai-Da-Zao Decoction) for Poststroke Depression Based on Network Pharmacology and Molecular Docking Zhicong Ding ,1 Fangfang Xu,1 Qidi Sun,2 Bin Li,1 Nengxing Liang,1 Junwei Chen,1 and Shangzhen Yu 1,3 1Jinan University, Guangzhou 510632, China 2Yangzhou University, Yangzhou 225009, China 3Wuyi Hospital of Traditional Chinese Medicine, Jiangmen 529000, China Correspondence should be addressed to Shangzhen Yu; [email protected] Received 19 May 2021; Accepted 14 August 2021; Published 23 August 2021 Academic Editor: Ghulam Ashraf Copyright © 2021 Zhicong Ding et al. -is is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Background. Poststroke depression (PSD) is the most common and serious neuropsychiatric complication occurring after ce- rebrovascular accidents, seriously endangering human health while also imposing a heavy burden on society. Nevertheless, it is difficult to control disease progression. Gan-Mai-Da-Zao Decoction (GMDZD) is effective for PSD, but its mechanism of action in PSD is unknown. In this study, we explored the mechanism of action of GMDZD in PSD treatment using network pharmacology and molecular docking. Material and methods. We obtained the active components of all drugs and their targets from the public database TCMSP and published articles. -en, we collected PSD-related targets from the GeneCards and OMIM databases. -
A Graph-Theoretic Approach to Model Genomic Data and Identify Biological Modules Asscociated with Cancer Outcomes
A Graph-Theoretic Approach to Model Genomic Data and Identify Biological Modules Asscociated with Cancer Outcomes Deanna Petrochilos A dissertation presented in partial fulfillment of the requirements for the degree of Doctor of Philosophy University of Washington 2013 Reading Committee: Neil Abernethy, Chair John Gennari, Ali Shojaie Program Authorized to Offer Degree: Biomedical Informatics and Health Education UMI Number: 3588836 All rights reserved INFORMATION TO ALL USERS The quality of this reproduction is dependent upon the quality of the copy submitted. In the unlikely event that the author did not send a complete manuscript and there are missing pages, these will be noted. Also, if material had to be removed, a note will indicate the deletion. UMI 3588836 Published by ProQuest LLC (2013). Copyright in the Dissertation held by the Author. Microform Edition © ProQuest LLC. All rights reserved. This work is protected against unauthorized copying under Title 17, United States Code ProQuest LLC. 789 East Eisenhower Parkway P.O. Box 1346 Ann Arbor, MI 48106 - 1346 ©Copyright 2013 Deanna Petrochilos University of Washington Abstract Using Graph-Based Methods to Integrate and Analyze Cancer Genomic Data Deanna Petrochilos Chair of the Supervisory Committee: Assistant Professor Neil Abernethy Biomedical Informatics and Health Education Studies of the genetic basis of complex disease present statistical and methodological challenges in the discovery of reliable and high-confidence genes that reveal biological phenomena underlying the etiology of disease or gene signatures prognostic of disease outcomes. This dissertation examines the capacity of graph-theoretical methods to model and analyze genomic information and thus facilitate using prior knowledge to create a more discrete and functionally relevant feature space. -
Supporting Information for Proteomics DOI 10.1002/Pmic.200500725
Supporting Information for Proteomics DOI 10.1002/pmic.200500725 Iveta Klouckova, Petra Hrncirova, Yehia Mechref, Randy J. Arnold, Ting-Kai Li, William J. McBride and Milos V. Novotny Changes in liver protein abundance in inbred alcohol-preferring rats due to chronic alcohol exposure, as measured through a proteomics approach ª 2006 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim www.proteomics-journal.com 113 significant proteins GROUP1 GROUP2 ratio of ratio of Coverage average iP1- average iP7- Coverage average iP1- average iP7- Name Abbreviation ssp extract denzity_iP7- ssp extract denzity_iP7- [%] 6" ± "stdev 12" ± "stdev [%] 6" ± "stdev 12" ± "stdev 12/ iP1-6 12/ iP1-6 14-3-3 protein gamma 143G_HUMAN 3209 ex1 24 89 ± 26 53 ± 12 0.59 ± 0.22 2214 ex1 N/A 154 ± 15 136 ± 49 0.89 ± 0.33 Sodium/potassium- transporting ATPase A1A3_RAT 5607 ex1 2 183 ± 119 140 ± 101 0.77 ± 0.75 4727 ex1 2 288 ± 122 100 ± 63 0.35 ± 0.26 alpha-3 chain Aspartate aminotransferase, AATC_RAT 6438 A ex1 8 99 ± 27 67 ± 17 0.67 ± 0.25 6426 ex1 8 348 ± 65 158 ± 61 0.45 ± 0.19 cytoplasmic Acyl-CoA 5328 ex1 14 91 ± 73 48 ± 13 0.53 ± 0.44 5414 ex1 14 486 ± 96 286 ± 99 0.59 ± 0.24 dehydrogenase, ACDB_RAT 7210 ex1 15 181 ± 62 126 ± 32 0.70 ± 0.3 7303 ex1 15 605 ± 125 452 ± 69 0.75 ± 0.19 short/branched chain 5337 B ex1 19 117 ± 60 90 ± 18 0.77 ± 0.43 5429 ex1 19 531 ± 83 273 ± 71 0.52 ± 0.16 Acyl-CoA dehydrogenase, long- ACDL_RAT 5421 C ex1 9 669 ± 151 474 ± 118 0.71 ± 0.24 5417 ex1 N/A 903 ± 267 963 ± 160 1.07 ± 0.36 chain specific Acyl-CoA dehydrogenase, ACDM_RAT 7413 D ex1 -
Structural and Functional Analysis of Heparan Sulfate Sulfotransferases
STRUCTURAL AND FUNCTIONAL ANALYSIS OF HEPARAN SULFATE SULFOTRANSFERASES Heather Nicole Bethea A dissertation submitted to the faculty of the University of North Carolina at Chapel Hill in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Pharmaceutical Sciences (Medicinal Chemistry and Natural Products) Chapel Hill 2010 Approved by: Michael Jarstfer, Ph.D. Jian Liu, Ph.D. Lars Pedersen, Ph.D. Scott Singleton, Ph.D. Qisheng Zhang, Ph.D. ABSTRACT HEATHER BETHEA: Structural and Functional Analysis of Heparan Sulfate Sulfotransferases (Under the direction of Jian Liu, Ph.D.) Heparan sulfate (HS), a major polysaccharide component of the vascular system, is involved in regulating a number of functions of the blood vessel wall including blood coagulation, cell differentiation, and the inflammatory response. The wide range of biological functions makes HS an attractive therapeutic target. The long term goal of our research involves utilizing an enzyme-based approach to develop HS-based therapeutics for treating thrombotic diseases, cancer and excessive inflammatory responses. The biosynthesis of HS involves multiple specialized sulfotransferases such as 2-O-sulfotransferase (2OST) and 6-O-sulfotransferase (6OST), which are essential for preparing HS with activities in regulating vascular development and blood coagulation. The substrate specificity of the HS sulfotransferases controls the sulfation patterns of HS, permitting HS to exhibit a specific function, however, limited knowledge regarding the mechanism of these enzymes has hindered our ability to prepare functionally-specific HS. We aim to understand the mechanism of action of these two enzymes in hopes of developing heparin/HS with improved anticoagulant efficacy. In this dissertation, we present successful crystallization of 2OST in complex with 3’- phosphoadenosine 5’-phosphate (PAP). -
X-Ray Fluorescence Analysis Method Röntgenfluoreszenz-Analyseverfahren Procédé D’Analyse Par Rayons X Fluorescents
(19) & (11) EP 2 084 519 B1 (12) EUROPEAN PATENT SPECIFICATION (45) Date of publication and mention (51) Int Cl.: of the grant of the patent: G01N 23/223 (2006.01) G01T 1/36 (2006.01) 01.08.2012 Bulletin 2012/31 C12Q 1/00 (2006.01) (21) Application number: 07874491.9 (86) International application number: PCT/US2007/021888 (22) Date of filing: 10.10.2007 (87) International publication number: WO 2008/127291 (23.10.2008 Gazette 2008/43) (54) X-RAY FLUORESCENCE ANALYSIS METHOD RÖNTGENFLUORESZENZ-ANALYSEVERFAHREN PROCÉDÉ D’ANALYSE PAR RAYONS X FLUORESCENTS (84) Designated Contracting States: • BURRELL, Anthony, K. AT BE BG CH CY CZ DE DK EE ES FI FR GB GR Los Alamos, NM 87544 (US) HU IE IS IT LI LT LU LV MC MT NL PL PT RO SE SI SK TR (74) Representative: Albrecht, Thomas Kraus & Weisert (30) Priority: 10.10.2006 US 850594 P Patent- und Rechtsanwälte Thomas-Wimmer-Ring 15 (43) Date of publication of application: 80539 München (DE) 05.08.2009 Bulletin 2009/32 (56) References cited: (60) Divisional application: JP-A- 2001 289 802 US-A1- 2003 027 129 12164870.3 US-A1- 2003 027 129 US-A1- 2004 004 183 US-A1- 2004 017 884 US-A1- 2004 017 884 (73) Proprietors: US-A1- 2004 093 526 US-A1- 2004 235 059 • Los Alamos National Security, LLC US-A1- 2004 235 059 US-A1- 2005 011 818 Los Alamos, NM 87545 (US) US-A1- 2005 011 818 US-B1- 6 329 209 • Caldera Pharmaceuticals, INC. US-B2- 6 719 147 Los Alamos, NM 87544 (US) • GOLDIN E M ET AL: "Quantitation of antibody (72) Inventors: binding to cell surface antigens by X-ray • BIRNBAUM, Eva, R. -
The Metabolism of Androstenone and Other Steroid Hormone Conjugates in Relation to Boar Taint
The Metabolism of Androstenone and Other Steroid Hormone Conjugates in Relation to Boar Taint by Heidi M. Laderoute A Thesis presented to The University of Guelph In partial fulfillment of requirements for the degree of Master of Science in Animal and Poultry Science with Toxicology Guelph, Ontario, Canada © Heidi M. Laderoute, April, 2015 ABSTRACT THE METABOLISM OF ANDROSTENONE AND OTHER STEROID HORMONE CONJUGATES IN RELATION TO BOAR TAINT Heidi M. Laderoute Advisor: University of Guelph, 2015 Dr. E.J. Squires Increased public interest in the welfare of pigs reared for pork production has led to an increased effort in finding new approaches for controlling the unpleasant odour and flavour from heated pork products known as boar taint. Therefore, this study investigated the metabolism of androstenone and the enzymes involved in its sulfoconjugation in order to further understand the pathways and genes involved in the development of this meat quality defect. Leydig cells that were incubated with androstenone produced 3-keto- sulfoxy-androstenone, providing direct evidence, for the first time, that sulfoconjugation of this steroid does occur in the boar. In addition, human embryonic kidney cells that were overexpressed with porcine sulfotransferase (SULT) enzymes showed that SULT2A1, but not SULT2B1, was responsible for sulfoconjugating androstenone. These findings emphasize the importance of conjugation in steroid metabolism and its relevance to boar taint is discussed. ACKNOWLEDGEMENTS I would like to gratefully and sincerely thank my advisor, Dr. E. James Squires, for providing me with the opportunity to be a graduate student and for introducing me to the world of boar taint. This project would not have been possible without your guidance, encouragement, and patience over the last few years. -
Regeneration of PAPS for the Enzymatic Synthesis of Sulfated Oligosaccharides
J. Org. Chem. 2000, 65, 5565-5574 5565 Regeneration of PAPS for the Enzymatic Synthesis of Sulfated Oligosaccharides Michael D. Burkart, Masayuki Izumi, Eli Chapman, Chun-Hung Lin,† and Chi-Huey Wong* Department of Chemistry and The Skaggs Institute for Chemical Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037 [email protected] Received February 24, 2000 This paper describes the study of 3′-phosphoadenosine-5′-phosphosulfate (PAPS) regeneration from 3′-phosphoadenosine-5′-phosphate (PAP) for use in practical syntheses of carbohydrate sulfates which are catalyzed by sulfotransferases. Among the regeneration systems, the one with recombinant aryl sulfotransferase proved to be the most practical. This regeneration system was coupled with a sulfotransferase-catalyzed reaction, using a recombinant Nod factor sulfotransferase, for the synthesis of various oligosaccharide sulfates that were further glycosylated using glycosyl- transferases. Sulfated carbohydrates and glycopeptides have gener- modulation of receptor binding.1,8 Drug design for the ated interest due to their roles in specific cell signaling inhibition of these therapeutically interesting enzymes and recognition events of both normal and disease has quickly followed sulfotransferase discovery and will processes,1 such as chronic inflammation, cancer me- gain increasing importance as we have easy access to this tastasis, cartilage formation, and hormone regulation. class of molecules to study their biological roles more Recent studies -
(Gan-Mai-Da-Zao Decoction) for Post- Stroke Depression Based on Network Pharmacology and Molecular Docking
Exploring The Mechanism of Action of Herbal Medicine (Gan-Mai-Da-Zao Decoction) For Post- Stroke Depression Based On Network Pharmacology And Molecular Docking Zhi-Cong Ding Jinan University Fang-Fang Xu Jinan University Qi-Di Sun Yangzhou University Bin Li Jinan University Neng-Xing Liang Jinan University Jun-Wei Chen Jinan University Shang-Zhen Yu ( [email protected] ) Jinan University https://orcid.org/0000-0003-0930-6092 Research Keywords: post-stroke depression, Gan-Mai-Da-Zao decoction, network pharmacology, GO and KEGG pathway enrichment, molecular docking Posted Date: May 17th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-508953/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/24 Abstract Backgrounds: Post-stroke depression is the most common and serious neuropsychiatric complication occurring after cerebrovascular accidents, seriously endangering human health while also imposing a heavy burden on society. Even so, it is dicult to have drugs to contain the progression of the disease. It’s reported that Gan-Mai-Da-Zao decoction was effective to PSD, but it is unknown on its mechanism of action for PSD. In this study, we aimed to explore the possible mechanisms of action of Gan-Mai-Da-Zao decoction in the treatment of PSD using network pharmacology and molecular docking. Material and methods: We obtained the active components and their targets of all drugs from the public database TCMSP and published articles. Then, we collected the PSD-related targets from GeneCards and OMIM databases. Cytoscape 3.8.2 was applied to construct PPI and composite target disease networks.