Unexpected Molecular and Morphological Diversity of Hemichordate Larvae from the Neotropics Rachel Collin1*, Dagoberto E. Venera-Pontón1, Amy C. Driskell2, Kenneth S. Macdonald III2, Michael J. Boyle3 1Smithsonian Tropical Research Institute, Apartado Postal 0843-03092, Balboa Ancon, Panama. 2Laboratories of Analytical Biology, National Museum of Natural History, Smithsonian Institution, Washington DC, USA 3Smithsonian Marine Station, Fort Pierce, Florida *Corresponding author: e-mail:
[email protected]; (202) 633-4700 x28766. Address for correspondence: STRI, Unit 9100, Box 0948, DPO AA 34002, USA. Invertebrate Biology Keywords: Tropical East Pacific, Panama, Caribbean, meroplankton, enteropneust, invertebrate, larval morphology Running Head: Neotropic Hemichordate Larval Diversity September 2019 Collin et al. Page 1 of 31 Abstract The diversity of tropical marine invertebrates is poorly documented, especially those groups for which collecting adults is difficult. We collected the planktonic tornaria larvae of hemichordates (acorn worms) to assess their hidden diversity in the Neotropics. Larvae were retrieved in plankton tows from waters of the Pacific and Caribbean coasts of Panama, followed by DNA barcoding of mitochondrial cytochrome c oxidase subunit I (COI) and 16S ribosomal DNA to estimate their diversity in the region. With moderate sampling efforts, we discovered 6 operational taxonomic units (OTUs) in the Bay of Panama on the Pacific coast, in contrast to the single species previously recorded for the entire Tropical Eastern Pacific. We found 8 OTUs in Bocas del Toro Province on the Caribbean coast, compared to 7 species documented from adults in the entire Caribbean. All OTUs differed from each other and from named acorn worm sequences in GenBank by >10% pairwise distance in COI and >2% in 16S.