Journal of Virology Research & Reports
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Metagenomic Analysis Indicates That Stressors Induce Production of Herpes-Like Viruses in the Coral Porites Compressa
Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa Rebecca L. Vega Thurbera,b,1, Katie L. Barotta, Dana Halla, Hong Liua, Beltran Rodriguez-Muellera, Christelle Desnuesa,c, Robert A. Edwardsa,d,e,f, Matthew Haynesa, Florent E. Anglya, Linda Wegleya, and Forest L. Rohwera,e aDepartment of Biology, dComputational Sciences Research Center, and eCenter for Microbial Sciences, San Diego State University, San Diego, CA 92182; bDepartment of Biological Sciences, Florida International University, 3000 North East 151st, North Miami, FL 33181; cUnite´des Rickettsies, Unite Mixte de Recherche, Centre National de la Recherche Scientifique 6020. Faculte´deMe´ decine de la Timone, 13385 Marseille, France; and fMathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL 60439 Communicated by Baruch S. Blumberg, Fox Chase Cancer Center, Philadelphia, PA, September 11, 2008 (received for review April 25, 2008) During the last several decades corals have been in decline and at least established, an increase in viral particles within dinoflagellates has one-third of all coral species are now threatened with extinction. been hypothesized to be responsible for symbiont loss during Coral disease has been a major contributor to this threat, but little is bleaching (25–27). VLPs also have been identified visually on known about the responsible pathogens. To date most research has several species of scleractinian corals, specifically: Acropora muri- focused on bacterial and fungal diseases; however, viruses may also cata, Porites lobata, Porites lutea, and Porites australiensis (28). Based be important for coral health. Using a combination of empirical viral on morphological characteristics, these VLPs belong to several viral metagenomics and real-time PCR, we show that Porites compressa families including: tailed phages, large filamentous, and small corals contain a suite of eukaryotic viruses, many related to the (30–80 nm) to large (Ͼ100 nm) polyhedral viruses (29). -
On the Biological Success of Viruses
MI67CH25-Turner ARI 19 June 2013 8:14 V I E E W R S Review in Advance first posted online on June 28, 2013. (Changes may still occur before final publication E online and in print.) I N C N A D V A On the Biological Success of Viruses Brian R. Wasik and Paul E. Turner Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut 06520-8106; email: [email protected], [email protected] Annu. Rev. Microbiol. 2013. 67:519–41 Keywords The Annual Review of Microbiology is online at adaptation, biodiversity, environmental change, evolvability, extinction, micro.annualreviews.org robustness This article’s doi: 10.1146/annurev-micro-090110-102833 Abstract Copyright c 2013 by Annual Reviews. Are viruses more biologically successful than cellular life? Here we exam- All rights reserved ine many ways of gauging biological success, including numerical abun- dance, environmental tolerance, type biodiversity, reproductive potential, and widespread impact on other organisms. We especially focus on suc- cessful ability to evolutionarily adapt in the face of environmental change. Viruses are often challenged by dynamic environments, such as host immune function and evolved resistance as well as abiotic fluctuations in temperature, moisture, and other stressors that reduce virion stability. Despite these chal- lenges, our experimental evolution studies show that viruses can often readily adapt, and novel virus emergence in humans and other hosts is increasingly problematic. We additionally consider whether viruses are advantaged in evolvability—the capacity to evolve—and in avoidance of extinction. On the basis of these different ways of gauging biological success, we conclude that viruses are the most successful inhabitants of the biosphere. -
The Complete Genome of an Endogenous Nimavirus (Nimav-1 Lva) from the Pacific Whiteleg Shrimp Penaeus (Litopenaeus) Vannamei
G C A T T A C G G C A T genes Article The Complete Genome of an Endogenous Nimavirus (Nimav-1_LVa) From the Pacific Whiteleg Shrimp Penaeus (Litopenaeus) Vannamei Weidong Bao 1,* , Kathy F. J. Tang 2 and Acacia Alcivar-Warren 3,4,* 1 Genetic Information Research Institute, 20380 Town Center Lane, Suite 240, Cupertino, CA 95014, USA 2 Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, 106 Nanjing Road, Qingdao 266071, China; [email protected] 3 Fundación para la Conservation de la Biodiversidad Acuática y Terrestre (FUCOBI), Quito EC1701, Ecuador 4 Environmental Genomics Inc., ONE HEALTH Epigenomics Educational Initiative, P.O. Box 196, Southborough, MA 01772, USA * Correspondence: [email protected] (W.B.); [email protected] (A.A.-W.) Received: 17 December 2019; Accepted: 9 January 2020; Published: 14 January 2020 Abstract: White spot syndrome virus (WSSV), the lone virus of the genus Whispovirus under the family Nimaviridae, is one of the most devastating viruses affecting the shrimp farming industry. Knowledge about this virus, in particular, its evolution history, has been limited, partly due to its large genome and the lack of other closely related free-living viruses for comparative studies. In this study, we reconstructed a full-length endogenous nimavirus consensus genome, Nimav-1_LVa (279,905 bp), in the genome sequence of Penaeus (Litopenaeus) vannamei breed Kehai No. 1 (ASM378908v1). This endogenous virus seemed to insert exclusively into the telomeric pentanucleotide microsatellite (TAACC/GGTTA)n. It encoded 117 putative genes, with some containing introns, such as g012 (inhibitor of apoptosis, IAP), g046 (crustacean hyperglycemic hormone, CHH), g155 (innexin), g158 (Bax inhibitor 1 like). -
JOURNAL of VIROLOGY VOLUME 57 * MARCH 1986 * NUMBER 3 Arnold J
JOURNAL OF VIROLOGY VOLUME 57 * MARCH 1986 * NUMBER 3 Arnold J. Levine, Editor in Chief Michael B. A. Oldstone, Editor (1988) (1989) Scripps Clinic & Research Foundation Princeton University La Jolla, Calif. Princeton, N.J. Thomas E. Shenk, Editor (1989) David T. Denhardt, Editor (1987) Princeton University University of Western Ontario Princeton, N.J. London, Ontario, Canada Anna Marie Skalka, Editor (1989) Bernard N. Fields, Editor (1988) Hoffmann-La Roche Inc. Harvard Medical School Nutley, N.J. Boston, Mass. Robert A. Weisberg, Editor (1988) Robert M. Krug, Editor (1987) National Institute of Child Health Sloan-Kettering Institute and Human Development New York, N.Y. Bethesda, Md. EDITORIAL BOARD James Alwine (1988) Hidesaburo Hanafusa (1986) Lois K. Miller (1988) Priscilla A. Schaffer (1987) David Baltimore (1987) William S. Hayward (1987) Peter Model (1986) Sondra Schlesinger (1986) Tamar Ben-Porat (1987) Roger Hendrix (1987) Bernard Moss (1986) Manfred Schubert (1988) Kenneth I. Berns (1988) Martin Hirsch (1986) Fred Murphy (1986) June R. Scott (1986) Michael Botchan (1986) John J. Holland (1987) Opendra Narayan (1988) Bart Sefton (1988) Thomas J. Braciale (1988) Ian H. Holmes (1986) Joseph R. Nevins (1988) Charles J. Sherr (1987) Joan Brugge (1988) Robert W. Honess (1986) Nancy G. Nossal (1987) Saul J. Silverstein Barrie J. Carter (1987) Nancy Hopkins (1986) Abner Notkins (1986) (1988) John M. Coffin (1986) Peter M. Howley (1987) J. Thomas Parsons (1986) Patricia G. Spear (1987) Geoffrey M. Cooper (1987) Alice S. Huang (1987) Ulf G. Pettersson (1986) Nat Sternberg (1986) Donald Court (1987) Steve Hughes (1988) Lennart Philipson (1987) Bruce Stillman (1988) Richard Courtney (1986) Tony Hunter (1986) Lewis I. -
Historical Overview 1
Historical Overview 1 Contents 1.1 Since When Have We Known of Viruses? ................................................ 3 1.2 What Technical Advances Have Contributed to the Development of Modern Virology? .......................................................................... 4 1.2.1 Animal Experiments Have Provided Important Insights into the Pathogenesis of Viral Diseases .................................................... 5 1.2.2 Cell Culture Systems Are an Indispensable Basis for Virus Research ........... 6 1.2.3 Modern Molecular Biology Is also a Child of Virus Research ................... 8 1.3 What Is the Importance of the Henle–Koch Postulates? .................................. 9 1.4 What Is the Interrelationship Between Virus Research, Cancer Research, Neurobiology and Immunology? .......................................................... 10 1.4.1 Viruses are Able to Transform Cells and Cause Cancer .......................... 10 1.4.2 Central Nervous System Disorders Emerge as Late Sequelae of Slow Viral Infections ........................................................................... 12 1.4.3 Interferons Stimulate the Immune Defence Against Viral Infections . .. .. .. .. 12 1.5 What Strategies Underlie the Development of Antiviral Chemotherapeutic Agents? . 13 1.6 What Challenges Must Modern Virology Face in the Future? .. ... ... ... ... ... ... ... ... 13 Further Reading ................................................................................... 14 1.1 Since When Have We Known of Viruses? “Poisons” were -
A Novel RNA Virus in the Parasitoid Wasp Lysiphlebus Fabarum: Genomic Structure, Prevalence, and Transmission
viruses Article A Novel RNA Virus in the Parasitoid Wasp Lysiphlebus fabarum: Genomic Structure, Prevalence, and Transmission 1,2, , 1,2 1,2, Martina N. Lüthi * y , Christoph Vorburger and Alice B. Dennis z 1 Institute of Integrative Biology, ETH Zürich, Universitätstrasse 16, 8092 Zürich, Switzerland; [email protected] (C.V.); [email protected] (A.B.D.) 2 Eawag, Swiss Federal Institute of Aquatic Science and Technology, Überlandstrasse 133, 8600 Dübendorf, Switzerland * Correspondence: [email protected] Current address: Institute of Plant Sciences, University of Bern, Altenbergrain 21, 3013 Bern, Switzerland. y Current address: Institute of Biochemistry and Biology, University of Potsdam, Karl-Liebknecht-Strasse z 24–25, 14476 Potsdam, Germany. Received: 17 November 2019; Accepted: 31 December 2019; Published: 3 January 2020 Abstract: We report on a novel RNA virus infecting the wasp Lysiphlebus fabarum, a parasitoid of aphids. This virus, tentatively named “Lysiphlebus fabarum virus” (LysV), was discovered in transcriptome sequences of wasps from an experimental evolution study in which the parasitoids were allowed to adapt to aphid hosts (Aphis fabae) with or without resistance-conferring endosymbionts. Based on phylogenetic analyses of the viral RNA-dependent RNA polymerase (RdRp), LysV belongs to the Iflaviridae family in the order of the Picornavirales, with the closest known relatives all being parasitoid wasp-infecting viruses. We developed an endpoint PCR and a more sensitive qPCR assay to screen for LysV in field samples and laboratory lines. These screens verified the occurrence of LysV in wild parasitoids and identified the likely wild-source population for lab infections in Western Switzerland. Three viral haplotypes could be distinguished in wild populations, of which two were found in the laboratory. -
Module1: General Concepts
NPTEL – Biotechnology – General Virology Module1: General Concepts Lecture 1: Virus history The history of virology goes back to the late 19th century, when German anatomist Dr Jacob Henle (discoverer of Henle’s loop) hypothesized the existence of infectious agent that were too small to be observed under light microscope. This idea fails to be accepted by the present scientific community in the absence of any direct evidence. At the same time three landmark discoveries came together that formed the founding stone of what we call today as medical science. The first discovery came from Louis Pasture (1822-1895) who gave the spontaneous generation theory from his famous swan-neck flask experiment. The second discovery came from Robert Koch (1843-1910), a student of Jacob Henle, who showed for first time that the anthrax and tuberculosis is caused by a bacillus, and finally Joseph Lister (1827-1912) gave the concept of sterility during the surgery and isolation of new organism. The history of viruses and the field of virology are broadly divided into three phases, namely discovery, early and modern. The discovery phase (1886-1913) In 1879, Adolf Mayer, a German scientist first observed the dark and light spot on infected leaves of tobacco plant and named it tobacco mosaic disease. Although he failed to describe the disease, he showed the infectious nature of the disease after inoculating the juice extract of diseased plant to a healthy one. The next step was taken by a Russian scientist Dimitri Ivanovsky in 1890, who demonstrated that sap of the leaves infected with tobacco mosaic disease retains its infectious property even after its filtration through a Chamberland filter. -
The Origin and Evolution of Viruses
Mini Review Agri Res & Tech: Open Access J Volume 21 Issue 5 - June 2019 Copyright © All rights are reserved by Luka AO Awata DOI: 10.19080/ARTOAJ.2019.21.556181 The Central Question in Virology: The Origin and Evolution of Viruses Luka AO Awata1*, Beatrice E Ifie2, Pangirayi Tongoona2, Eric Danquah2, Samuel Offei2 and Phillip W Marchelo D’ragga3 1Directorate of Research, Ministry of Agriculture and Food Security, South Sudan 2College of Basic and Applied Sciences, University of Ghana, Ghana 3Department of Agricultural Sciences, University of Juba, South Sudan Submission: June 01, 2019; Published: June 12, 2019 *Corresponding author: Luka AO Awata, Directorate of Research, Ministry of Agriculture and Food Security, Ministries Complex, Parliament Road, P.O. Box 33, Juba, South Sudan Abstract Viruses are major threats to both animals and plants worldwide. A virus exists as a set of one or more nucleic acid molecules normally encased in a protective coat of protein or lipoprotein. It is able to replicate itself within suitable host cells, causing diseases to plants and animals. While the three domains of life trace their linages back to a single protein (the Last Universal Cellular Ancestor (LUCA), information on parental molecule from which all viruses descended is inadequate. Structural analyses of capsid proteins suggest that there is no universal viral protein and different types of virions are mostly formed independently. As a result, it is impossible to neither include viruses in the Tree of Life of LUCA nor to draw a universal tree of viruses analogous to the tree of life. Although the concepts on the origin and evolution of viruses are well documented, the structure and biological activities of viruses are paradoxical. -
Journal of Virology
JOURNAL OF VIROLOGY Volume 68 November 1994 No. 11 MINIREVIEW Molecular Biology of the Human Immunodeficiency Virus Ramu A. Subbramanian and Eric 6831-6835 Accessory Proteins A. Cohen ANIMAL VIRUSES Monoclonal Antibodies against Influenza Virus PB2 and NP J. Baircena, M. Ochoa, S. de la 6900-6909 Polypeptides Interfere with the Initiation Step of Viral Luna, J. A. Melero, A. Nieto, J. mRNA Synthesis In Vitro Ortin, and A. Portela Low-Affinity E2-Binding Site Mediates Downmodulation of Frank Stubenrauch and Herbert 6959-6966 E2 Transactivation of the Human Papillomavirus Type 8 Pfister Late Promoter Template-Dependent, In Vitro Replication of Rotavirus RNA Dayue Chen, Carl Q.-Y. Zeng, 7030-7039 Melissa J. Wentz, Mario Gorziglia, Mary K. Estes, and Robert F. Ramig Improved Self-Inactivating Retroviral Vectors Derived from Paul Olson, Susan Nelson, and 7060-7066 Spleen Necrosis Virus Ralph Dornburg Isolation of a New Foamy Retrovirus from Orangutans Myra 0. McClure, Paul D. 7124-7130 Bieniasz, Thomas F. Schulz, Ian L. Chrystie, Guy Simpson, Adriano Aguzzi, Julian G. Hoad, Andrew Cunningham, James Kirkwood, and Robin A. Weiss Cell Lines Inducibly Expressing the Adeno-Associated Virus Christina Holscher, Markus Horer, 7169-7177 (AAV) rep Gene: Requirements for Productive Replication Jurgen A. Kleinschmidt, of rep-Negative AAV Mutants Hanswalter Zentgraf, Alexander Burkle, and Regine Heilbronn Role of Flanking E Box Motifs in Human Immunodeficiency S.-H. Ignatius Ou, Leon F. 7188-7199 Virus Type 1 TATA Element Function Garcia-Martinez, Eyvind J. Paulssen, and Richard B. Gaynor Characterization and Molecular Basis of Heterogeneity of Fernando Rodriguez, Carlos 7244-7252 the African Swine Fever Virus Envelope Protein p54 Alcaraz, Adolfo Eiras, Rafael J. -
1 Chapter I Overall Issues of Virus and Host Evolution
CHAPTER I OVERALL ISSUES OF VIRUS AND HOST EVOLUTION tree of life. Yet viruses do have the This book seeks to present the evolution of characteristics of life, can be killed, can become viruses from the perspective of the evolution extinct and adhere to the rules of evolutionary of their host. Since viruses essentially infect biology and Darwinian selection. In addition, all life forms, the book will broadly cover all viruses have enormous impact on the evolution life. Such an organization of the virus of their host. Viruses are ancient life forms, their literature will thus differ considerably from numbers are vast and their role in the fabric of the usual pattern of presenting viruses life is fundamental and unending. They according to either the virus type or the type represent the leading edge of evolution of all of host disease they are associated with. In living entities and they must no longer be left out so doing, it presents the broad patterns of the of the tree of life. evolution of life and evaluates the role of viruses in host evolution as well as the role Definitions. The concept of a virus has old of host in virus evolution. This book also origins, yet our modern understanding or seeks to broadly consider and present the definition of a virus is relatively recent and role of persistent viruses in evolution. directly associated with our unraveling the nature Although we have come to realize that viral of genes and nucleic acids in biological systems. persistence is indeed a common relationship As it will be important to avoid the perpetuation between virus and host, it is usually of some of the vague and sometimes inaccurate considered as a variation of a host infection views of viruses, below we present some pattern and not the basis from which to definitions that apply to modern virology. -
Department of Microbiology MCB 315 Introductory Virology
EDO UNIVERSITY IYAMHO Department of Microbiology MCB 315 Introductory Virology Instructor: Ezeanya Chinyere, email: [email protected] Lectures: Tuesdays, 8am – 10am, NLT4, Faculty of Science building Lectures: Wednesdays, 10am-11am, NLT 3, Faculty of Science building Office hours: Mondays, 12noon to 1pm (just before class), Office: Room 7, Faculty building Description: This course is intended to give the students the basic and fundamental knowledge of the field of virology. This course covers introductory topics such as: History of virology, General characteristics of plant, animal and bacterial viruses; Viral structure and morphology; Cultivation of viruses; Viral replication; Viral detection and cytopathic effects; Virus classification; Viral assay and Purification. Prerequisites: Students should be accustomed with basic concepts of microbiology (e.g., different types of microorganism and their diversity) and basic properties of viruses (e.g., obligate intracellular parasitic nature). Students are also expected to be familiar with basic concepts of imperative viral taxonomy. Assignments: There will be 5 homework assignments throughout the course in addition to 2 Tests and a Final Examination. Home works are due on the due date and submitted electronically. Home works are organized and structured as trainings and are meant to serve as studying material for the students. There will also be 3 class exercises in groups. The goal of class exercises is to have the students’ tryout with very technical aspects of the course. Grading: We will assign 10% of this class grade to home works, 20% for the mid-term test and 70% for the final exam. The Final exam is all-encompassing. INTRODUCTORY VIROLOGY by EZEANYA.C. -
Here, There, and Everywhere: the Wide Host Range and Geographic Distribution of Zoonotic Orthopoxviruses
viruses Review Here, There, and Everywhere: The Wide Host Range and Geographic Distribution of Zoonotic Orthopoxviruses Natalia Ingrid Oliveira Silva, Jaqueline Silva de Oliveira, Erna Geessien Kroon , Giliane de Souza Trindade and Betânia Paiva Drumond * Laboratório de Vírus, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais: Belo Horizonte, Minas Gerais 31270-901, Brazil; [email protected] (N.I.O.S.); [email protected] (J.S.d.O.); [email protected] (E.G.K.); [email protected] (G.d.S.T.) * Correspondence: [email protected] Abstract: The global emergence of zoonotic viruses, including poxviruses, poses one of the greatest threats to human and animal health. Forty years after the eradication of smallpox, emerging zoonotic orthopoxviruses, such as monkeypox, cowpox, and vaccinia viruses continue to infect humans as well as wild and domestic animals. Currently, the geographical distribution of poxviruses in a broad range of hosts worldwide raises concerns regarding the possibility of outbreaks or viral dissemination to new geographical regions. Here, we review the global host ranges and current epidemiological understanding of zoonotic orthopoxviruses while focusing on orthopoxviruses with epidemic potential, including monkeypox, cowpox, and vaccinia viruses. Keywords: Orthopoxvirus; Poxviridae; zoonosis; Monkeypox virus; Cowpox virus; Vaccinia virus; host range; wild and domestic animals; emergent viruses; outbreak Citation: Silva, N.I.O.; de Oliveira, J.S.; Kroon, E.G.; Trindade, G.d.S.; Drumond, B.P. Here, There, and Everywhere: The Wide Host Range 1. Poxvirus and Emerging Diseases and Geographic Distribution of Zoonotic diseases, defined as diseases or infections that are naturally transmissible Zoonotic Orthopoxviruses. Viruses from vertebrate animals to humans, represent a significant threat to global health [1].