A Novel RNA Virus in the Parasitoid Wasp Lysiphlebus Fabarum: Genomic Structure, Prevalence, and Transmission
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
HYMENOPTERA: BRACONIDAE: EUPHORINAE)* by SCOTT RICHARD SHAW Museum of Comparative Zoology, Harvard University, Cambridge, Massachusetts 02138
CORE Metadata, citation and similar papers at core.ac.uk Provided by MUCC (Crossref) A NEW MEXICAN GENUS AND SPECIES OF DINOCAMPINI WITH SERRATE ANTENNAE (HYMENOPTERA: BRACONIDAE: EUPHORINAE)* BY SCOTT RICHARD SHAW Museum of Comparative Zoology, Harvard University, Cambridge, Massachusetts 02138 The cosmopolitan braconid subfamily Euphorinae (sensu Shaw 1985, 1987, 1988) comprises 36 genera of koinobiont endoparasi- toids, which parasitize the adult stages of holometabolous insects or nymphs and adults of hemimetabolous insects (Muesebeck 1936, 1963; Shenefelt 1980; Loan 1983; Shaw 1985, 1988). Occasionally the parasitoids of holometabolous insects will oviposit into larvae as well as adults (Smith, 1960; David & Wilde, 1973; Semyanov, 1979), but this only occurs where larvae are ecologically coincident with adults, living and feeding on the same plants (Tobias, 1966). Obrycki et al. (1985) found that Dinocampus coccinellae (Schrank) will oviposit into all larval instars, and pupae, as well as adults; however, the highest percentage of successful parasitization occurred when adults were attacked. Only a few papers have discussed euphorines of Mexico in particular (Muesebeck 1955; Shaw 1987). The euphorine tribe Dinocampini was defined by Shaw (1985, 1987, 1988) to comprise three genera with ocular setae, antennal scape three times longer than wide, and labial palpus reduced to two segments. As far as is known, members of the tribe Dinocampini parasitize adult beetles; Dinocampus Foerster parasitizes Coccinel- lidae (Shenefelt 1980) and Ropalophorus Curtis parasitizes Scolyti- dae (Shenefelt 1960, Shaw 1988). The hosts of the third included genus, Centistina Enderlein, are not known. Because these genera are known only from females (Balduf 1926; Shenefelt 1960), it seems possible that females of the entire tribe are thelyotokous, reproduc- ing parthenogenetically and producing only female progeny. -
Identification of Capsid/Coat Related Protein Folds and Their Utility for Virus Classification
ORIGINAL RESEARCH published: 10 March 2017 doi: 10.3389/fmicb.2017.00380 Identification of Capsid/Coat Related Protein Folds and Their Utility for Virus Classification Arshan Nasir 1, 2 and Gustavo Caetano-Anollés 1* 1 Department of Crop Sciences, Evolutionary Bioinformatics Laboratory, University of Illinois at Urbana-Champaign, Urbana, IL, USA, 2 Department of Biosciences, COMSATS Institute of Information Technology, Islamabad, Pakistan The viral supergroup includes the entire collection of known and unknown viruses that roam our planet and infect life forms. The supergroup is remarkably diverse both in its genetics and morphology and has historically remained difficult to study and classify. The accumulation of protein structure data in the past few years now provides an excellent opportunity to re-examine the classification and evolution of viruses. Here we scan completely sequenced viral proteomes from all genome types and identify protein folds involved in the formation of viral capsids and virion architectures. Viruses encoding similar capsid/coat related folds were pooled into lineages, after benchmarking against published literature. Remarkably, the in silico exercise reproduced all previously described members of known structure-based viral lineages, along with several proposals for new Edited by: additions, suggesting it could be a useful supplement to experimental approaches and Ricardo Flores, to aid qualitative assessment of viral diversity in metagenome samples. Polytechnic University of Valencia, Spain Keywords: capsid, virion, protein structure, virus taxonomy, SCOP, fold superfamily Reviewed by: Mario A. Fares, Consejo Superior de Investigaciones INTRODUCTION Científicas(CSIC), Spain Janne J. Ravantti, The last few years have dramatically increased our knowledge about viral systematics and University of Helsinki, Finland evolution. -
New Records of the Parasitoids of Drosophila Suzukii
Türk. entomol. derg., 2020, 44 (1): 71-79 ISSN 1010-6960 DOI: http://dx.doi.org/10.16970/entoted.607415 E-ISSN 2536-491X Original article (Orijinal araştırma) New records of the parasitoids of Drosophila suzukii (Matsumura, 1931) (Diptera: Drosophilidae) in newly invaded areas in Turkey: molecular identification Türkiye’de yeni istila edilen alanlarda Drosophila suzukii (Matsumura, 1931) (Diptera: Drosophilidae)’nin yeni parazitoit kayıtları: moleküler tanımlamaları Gülay KAÇAR1* Abstract Drosophila suzukii (Matsumura, 1931) (Diptera: Drosophilidae) is an invasive pest species of various fruit crops in the USA and Europe. Although D. suzukii has been recently reported in strawberry in Erzurum and other newly invaded areas in Turkey (e.g., Ankara, Bolu, Çanakkale and Düzce), there is only limited information on its indigenous parasitoids. In this study, four hymenopteran parasitoids, the larval parasitoids of Leptopilina boulardi (Barbotin, Carton & Kelner- Pillault, 1979), Leptopilina heterotoma (Thomson, 1862) (Figitidae) and the pupal parasitoids of Pachycrepoideus vindemmiae (Rondani, 1875) (Pteromalidae) and Trichopria drosophilae (Perkins, 1910) (Diapriidae), Were collected from frugivorous drosophilid species. Leptopilina boulardi and T. drosophilae were found for the first time in Turkey. Leptopilina heterotoma and P. vindemmiae were the most common parasitoid species, reared from field-collected fruit samples in this study. The laboratory assays revealed that both pupal parasitoids developed from D. suzukii pupae, but the association of L. heterotoma and L. boulardi with D. suzukii is yet to be confirmed. The PCR amplification of the cytochrome c oxidase subunit I loci of mtDNA of the representative four parasitoid samples produced different lengths of DNA fragments, ranging from 633 bp to 658 bp. -
Metagenomic Analysis Indicates That Stressors Induce Production of Herpes-Like Viruses in the Coral Porites Compressa
Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa Rebecca L. Vega Thurbera,b,1, Katie L. Barotta, Dana Halla, Hong Liua, Beltran Rodriguez-Muellera, Christelle Desnuesa,c, Robert A. Edwardsa,d,e,f, Matthew Haynesa, Florent E. Anglya, Linda Wegleya, and Forest L. Rohwera,e aDepartment of Biology, dComputational Sciences Research Center, and eCenter for Microbial Sciences, San Diego State University, San Diego, CA 92182; bDepartment of Biological Sciences, Florida International University, 3000 North East 151st, North Miami, FL 33181; cUnite´des Rickettsies, Unite Mixte de Recherche, Centre National de la Recherche Scientifique 6020. Faculte´deMe´ decine de la Timone, 13385 Marseille, France; and fMathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL 60439 Communicated by Baruch S. Blumberg, Fox Chase Cancer Center, Philadelphia, PA, September 11, 2008 (received for review April 25, 2008) During the last several decades corals have been in decline and at least established, an increase in viral particles within dinoflagellates has one-third of all coral species are now threatened with extinction. been hypothesized to be responsible for symbiont loss during Coral disease has been a major contributor to this threat, but little is bleaching (25–27). VLPs also have been identified visually on known about the responsible pathogens. To date most research has several species of scleractinian corals, specifically: Acropora muri- focused on bacterial and fungal diseases; however, viruses may also cata, Porites lobata, Porites lutea, and Porites australiensis (28). Based be important for coral health. Using a combination of empirical viral on morphological characteristics, these VLPs belong to several viral metagenomics and real-time PCR, we show that Porites compressa families including: tailed phages, large filamentous, and small corals contain a suite of eukaryotic viruses, many related to the (30–80 nm) to large (Ͼ100 nm) polyhedral viruses (29). -
Combination of Label-Free Quantitative Proteomics and Transcriptomics
Accepted Manuscript Combination of label-free quantitative proteomics and transcriptomics reveals intraspecific venom variation between the two strains of Tetrastichus brontispae, a parasitoid of two invasive beetles Bao-Zhen Tang, E. Meng, Hua-Jian Zhang, Xiao-Mei Zhang, Sassan Asgari, Ya-Ping Lin, Yun-Ying Lin, Zheng-Qiang Peng, Ting Qiao, Xia-Fang Zhang, You-Ming Hou PII: S1874-3919(18)30307-5 DOI: doi:10.1016/j.jprot.2018.08.003 Reference: JPROT 3189 To appear in: Journal of Proteomics Received date: 26 February 2018 Revised date: 25 July 2018 Accepted date: 3 August 2018 Please cite this article as: Bao-Zhen Tang, E. Meng, Hua-Jian Zhang, Xiao-Mei Zhang, Sassan Asgari, Ya-Ping Lin, Yun-Ying Lin, Zheng-Qiang Peng, Ting Qiao, Xia-Fang Zhang, You-Ming Hou , Combination of label-free quantitative proteomics and transcriptomics reveals intraspecific venom variation between the two strains of Tetrastichus brontispae, a parasitoid of two invasive beetles. Jprot (2018), doi:10.1016/ j.jprot.2018.08.003 This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain. ACCEPTED MANUSCRIPT Combination of Label-free Quantitative Proteomics and Transcriptomics -
Data Mining Cdnas Reveals Three New Single Stranded RNA Viruses in Nasonia (Hymenoptera: Pteromalidae)
Insect Molecular Biology Insect Molecular Biology (2010), 19 (Suppl. 1), 99–107 doi: 10.1111/j.1365-2583.2009.00934.x Data mining cDNAs reveals three new single stranded RNA viruses in Nasonia (Hymenoptera: Pteromalidae) D. C. S. G. Oliveira*, W. B. Hunter†, J. Ng*, Small viruses with a positive-sense single-stranded C. A. Desjardins*, P. M. Dang‡ and J. H. Werren* RNA (ssRNA) genome, and no DNA stage, are known as *Department of Biology, University of Rochester, picornaviruses (infecting vertebrates) or picorna-like Rochester, NY, USA; †United States Department of viruses (infecting non-vertebrates). Recently, the order Agriculture, Agricultural Research Service, US Picornavirales was formally characterized to include most, Horticultural Research Laboratory, Fort Pierce, FL, USA; but not all, ssRNA viruses (Le Gall et al., 2008). Among and ‡United States Department of Agriculture, other typical characteristics – e.g. a small icosahedral Agricultural Research Service, NPRU, Dawson, GA, capsid with a pseudo-T = 3 symmetry and a 7–12 kb USA genome made of one or two RNA segments – the Picor- navirales genome encodes a polyprotein with a replication Abstractimb_934 99..108 module that includes a helicase, a protease, and an RNA- dependent RNA polymerase (RdRp), in this order (see Le We report three novel small RNA viruses uncovered Gall et al., 2008 for details). Pathogenicity of the infections from cDNA libraries from parasitoid wasps in the can vary broadly from devastating epidemics to appar- genus Nasonia. The genome of this kind of virus ently persistent commensal infections. Several human Ј is a positive-sense single-stranded RNA with a 3 diseases, from hepatitis A to the common cold (e.g. -
How Influenza Virus Uses Host Cell Pathways During Uncoating
cells Review How Influenza Virus Uses Host Cell Pathways during Uncoating Etori Aguiar Moreira 1 , Yohei Yamauchi 2 and Patrick Matthias 1,3,* 1 Friedrich Miescher Institute for Biomedical Research, 4058 Basel, Switzerland; [email protected] 2 Faculty of Life Sciences, School of Cellular and Molecular Medicine, University of Bristol, Bristol BS8 1TD, UK; [email protected] 3 Faculty of Sciences, University of Basel, 4031 Basel, Switzerland * Correspondence: [email protected] Abstract: Influenza is a zoonotic respiratory disease of major public health interest due to its pan- demic potential, and a threat to animals and the human population. The influenza A virus genome consists of eight single-stranded RNA segments sequestered within a protein capsid and a lipid bilayer envelope. During host cell entry, cellular cues contribute to viral conformational changes that promote critical events such as fusion with late endosomes, capsid uncoating and viral genome release into the cytosol. In this focused review, we concisely describe the virus infection cycle and highlight the recent findings of host cell pathways and cytosolic proteins that assist influenza uncoating during host cell entry. Keywords: influenza; capsid uncoating; HDAC6; ubiquitin; EPS8; TNPO1; pandemic; M1; virus– host interaction Citation: Moreira, E.A.; Yamauchi, Y.; Matthias, P. How Influenza Virus Uses Host Cell Pathways during 1. Introduction Uncoating. Cells 2021, 10, 1722. Viruses are microscopic parasites that, unable to self-replicate, subvert a host cell https://doi.org/10.3390/ for their replication and propagation. Despite their apparent simplicity, they can cause cells10071722 severe diseases and even pose pandemic threats [1–3]. -
Deciphering the Virome of Culex Vishnui Subgroup Mosquitoes, the Major Vectors of Japanese Encephalitis, in Japan
viruses Article Deciphering the Virome of Culex vishnui Subgroup Mosquitoes, the Major Vectors of Japanese Encephalitis, in Japan Astri Nur Faizah 1,2 , Daisuke Kobayashi 2,3, Haruhiko Isawa 2,*, Michael Amoa-Bosompem 2,4, Katsunori Murota 2,5, Yukiko Higa 2, Kyoko Futami 6, Satoshi Shimada 7, Kyeong Soon Kim 8, Kentaro Itokawa 9, Mamoru Watanabe 2, Yoshio Tsuda 2, Noboru Minakawa 6, Kozue Miura 1, Kazuhiro Hirayama 1,* and Kyoko Sawabe 2 1 Laboratory of Veterinary Public Health, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan; [email protected] (A.N.F.); [email protected] (K.M.) 2 Department of Medical Entomology, National Institute of Infectious Diseases, 1-23-1 Toyama, Shinjuku-ku, Tokyo 162-8640, Japan; [email protected] (D.K.); [email protected] (M.A.-B.); k.murota@affrc.go.jp (K.M.); [email protected] (Y.H.); [email protected] (M.W.); [email protected] (Y.T.); [email protected] (K.S.) 3 Department of Research Promotion, Japan Agency for Medical Research and Development, 20F Yomiuri Shimbun Bldg. 1-7-1 Otemachi, Chiyoda-ku, Tokyo 100-0004, Japan 4 Department of Environmental Parasitology, Tokyo Medical and Dental University, 1-5-45 Yushima, Bunkyo-ku, Tokyo 113-8510, Japan 5 Kyushu Research Station, National Institute of Animal Health, NARO, 2702 Chuzan, Kagoshima 891-0105, Japan 6 Department of Vector Ecology and Environment, Institute of Tropical Medicine, Nagasaki University, 1-12-4 Sakamoto, Nagasaki 852-8523, Japan; [email protected] -
On the Biological Success of Viruses
MI67CH25-Turner ARI 19 June 2013 8:14 V I E E W R S Review in Advance first posted online on June 28, 2013. (Changes may still occur before final publication E online and in print.) I N C N A D V A On the Biological Success of Viruses Brian R. Wasik and Paul E. Turner Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut 06520-8106; email: [email protected], [email protected] Annu. Rev. Microbiol. 2013. 67:519–41 Keywords The Annual Review of Microbiology is online at adaptation, biodiversity, environmental change, evolvability, extinction, micro.annualreviews.org robustness This article’s doi: 10.1146/annurev-micro-090110-102833 Abstract Copyright c 2013 by Annual Reviews. Are viruses more biologically successful than cellular life? Here we exam- All rights reserved ine many ways of gauging biological success, including numerical abun- dance, environmental tolerance, type biodiversity, reproductive potential, and widespread impact on other organisms. We especially focus on suc- cessful ability to evolutionarily adapt in the face of environmental change. Viruses are often challenged by dynamic environments, such as host immune function and evolved resistance as well as abiotic fluctuations in temperature, moisture, and other stressors that reduce virion stability. Despite these chal- lenges, our experimental evolution studies show that viruses can often readily adapt, and novel virus emergence in humans and other hosts is increasingly problematic. We additionally consider whether viruses are advantaged in evolvability—the capacity to evolve—and in avoidance of extinction. On the basis of these different ways of gauging biological success, we conclude that viruses are the most successful inhabitants of the biosphere. -
Rearing of Parasitoid Braconid Wasp Dinocampus Coccinellae in a Simplified Tritrophic System
Bulletin of Insectology 71 (2): 287-293, 2018 ISSN 1721-8861 Rearing of parasitoid braconid wasp Dinocampus coccinellae in a simplified tritrophic system Santolo FRANCATI Dipartimento di Scienze e Tecnologie Agro-Alimentari (DISTAL), Università di Bologna, Italy Abstract Mass-rearing of beneficial arthropods often requires a multitrophic system for the rearing of entomophagous species. The use of artificial diets can facilitate this work by simplifying the number of elements in the system. Rearing Dinocampus coccinellae (Schrank) (Hymenoptera Braconidae), a parasitoid of different ladybird species, requires four elements: plants where the prey is reared, prey (i.e. aphids), hosts that feed on that prey (such as ladybirds) and the said parasitoids. This study attempted to simplify this rearing system by feeding the host, for a part of its life, with an artificial diet. A series of life history parameters was meas- ured in 3 generations of parasitoid rearing. Results show that the host’s food, parasitoid generation, or interaction between these two factors, does not affect the yield of D. coccinellae adults. However, the time of development became longer and the adult lifespan (of second generation) became shorter with artificial food. Overall, the data seems to suggest that it is possible to simplify a multitrophic system without great consequences on the performance of parasitoids, if the nutritional needs of the species are supported. Key words: Mass-rearing, multitrophic system, Harmonia axyridis, Ephestia kuehniella, artificial diet. Introduction cial diets are less nutritious than the natural prey or hosts (Grenier, 2009), then their quality as biological The mass-rearing and release of beneficial arthropods control agents decreases (Grenier and De Clercq, 2003; are the fundamentals of augmentative biological control Riddick, 2009). -
Immuno-Suppressive Virus-Like Particles of Drosophila Parasitoids
bioRxiv preprint doi: https://doi.org/10.1101/342758; this version posted July 18, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Immuno-suppressive Virus-like particles of 2 Drosophila parasitoids derive from the 3 domestication of a behaviour-manipulating 4 virus relative 1 1 1 2 1* 5 D. Di Giovanni , D. Lepetit , M. Boulesteix , M. Ravallec , J. Varaldi 6 1 Laboratoire de Biom´etrieet Biologie Evolutive (UMR CNRS 5558), Uni- 7 versity Lyon 1 { University of Lyon, 43 boulevard du 11 novembre 1918, 69622 8 Villeurbanne cedex, France 9 10 2 Unit´eBiVi (Biologie Int´egrative et Virologie des Insectes), Universit´eMont- 11 pellier II-INRA 1231, France 12 * corresponding author : julien.varaldi at univ-lyon1.fr 13 Abstract 14 To circumvent host immune response, numerous hymenopteran endo-parasitoid 15 species produce virus-like structures in their reproductive apparatus that are in- 16 jected into the host together with the eggs. These viral-like structures are ab- 17 solutely necessary for the reproduction of these wasps. The viral evolutionary 18 origin of these viral-like particles has been demonstrated in only two cases and 19 for both, the nature of the initial virus-wasp association remains unknown. This 20 is either because no closely related descendant infect the wasps or because the 21 virus lineage went extinct. In this paper, we first show that the virus-like par- 22 ticles (VLPs) produced by endoparasitoids of Drosophila belonging to the genus 23 Leptopilina (Hymenoptera Figitidae) have a viral origin, solving the debate on 24 their origin. -
The Complete Genome of an Endogenous Nimavirus (Nimav-1 Lva) from the Pacific Whiteleg Shrimp Penaeus (Litopenaeus) Vannamei
G C A T T A C G G C A T genes Article The Complete Genome of an Endogenous Nimavirus (Nimav-1_LVa) From the Pacific Whiteleg Shrimp Penaeus (Litopenaeus) Vannamei Weidong Bao 1,* , Kathy F. J. Tang 2 and Acacia Alcivar-Warren 3,4,* 1 Genetic Information Research Institute, 20380 Town Center Lane, Suite 240, Cupertino, CA 95014, USA 2 Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, 106 Nanjing Road, Qingdao 266071, China; [email protected] 3 Fundación para la Conservation de la Biodiversidad Acuática y Terrestre (FUCOBI), Quito EC1701, Ecuador 4 Environmental Genomics Inc., ONE HEALTH Epigenomics Educational Initiative, P.O. Box 196, Southborough, MA 01772, USA * Correspondence: [email protected] (W.B.); [email protected] (A.A.-W.) Received: 17 December 2019; Accepted: 9 January 2020; Published: 14 January 2020 Abstract: White spot syndrome virus (WSSV), the lone virus of the genus Whispovirus under the family Nimaviridae, is one of the most devastating viruses affecting the shrimp farming industry. Knowledge about this virus, in particular, its evolution history, has been limited, partly due to its large genome and the lack of other closely related free-living viruses for comparative studies. In this study, we reconstructed a full-length endogenous nimavirus consensus genome, Nimav-1_LVa (279,905 bp), in the genome sequence of Penaeus (Litopenaeus) vannamei breed Kehai No. 1 (ASM378908v1). This endogenous virus seemed to insert exclusively into the telomeric pentanucleotide microsatellite (TAACC/GGTTA)n. It encoded 117 putative genes, with some containing introns, such as g012 (inhibitor of apoptosis, IAP), g046 (crustacean hyperglycemic hormone, CHH), g155 (innexin), g158 (Bax inhibitor 1 like).