142 POSTERS: Cell Division and Growth Control
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Columbia College Columbia University in the City of New York
Columbia College Columbia University in the City of New York BULLETIN | 2011–2012 JULY 15, 2011 Directory of Services University Information (212) 854-1754 Columbia College On-Line http://www.college.columbia.edu/ ADDRESS INQUIRIES AS FOLLOWS: Financial Aid: Office of Financial Aid and Educational Financing Office of the Dean: Mailing address: Columbia College 100 Hamilton Hall 208 Hamilton Hall Mail Code 2802 Mail Code 2805 1130 Amersterdam Avenue 1130 Amersterdam Avenue New York, NY 10027 New York, NY 10027 Office location: 407 Alfred Lerner Hall telephone (212) 854-2441 telephone (212) 854-3711 Academic Success Programs (HEOP/NOP): Health Services: 403 Alfred Lerner Hall Health Services at Columbia Mail Code 2607 401 John Jay Hall 2920 Broadway Mail Code 3601 New York, NY 10027 519 West 114th Street telephone (212) 854-3514 New York, NY 10027 telephone (212) 854-7210 Admissions: http://www.health.columbia.edu/ Office of Undergraduate Admissions 212 Hamilton Hall Housing on Campus: Mail Code 2807 Residence Halls Assignment Office 1130 Amsterdam Avenue 111 Wallach Hall New York, NY 10027 Mail Code 4202 telephone (212) 854-2522 1116 Amsterdam Avenue http://www.studentaffairs.columbia.edu/admissions/ New York, NY 10027 (First-year, transfer, and visitor applications) telephone (212) 854-2775 http://www.columbia.edu/cu/reshalls/ Dining Services: 103 Wein Hall Housing off Campus: Mail Code 3701 Off-Campus Housing Assistance 411 West 116th Street 419 West 119th Street New York, NY 10027 New York, NY 10027 telephone (212) 854-6536 telephone -
Downloading Them Directly from the GO
bioRxiv preprint doi: https://doi.org/10.1101/284828; this version posted March 26, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Title: Evolution of the D. melanogaster chromatin landscape and its associated proteins Authors and affiliations: Elise Parey(1, 2) and Anton Crombach*(1,3) (1) Center for Interdisciplinary Research in Biology (CIRB), Collè!e de France, C#RS, IN$ERM, P$& Uni(ersit) Paris, 75005 Paris, France (2) (c-rrent address) Institut de Biologie de l’Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, P$& Uni(ersit) Paris, 75005 Paris, France (3) (current address) Inria, Antenne Lyon La Doua, 69603 Villeurbanne, France Author for Correspondence (*): Anton Crombach, Center for Interdisciplinary Research in Biology (CIRB), Collè!e de France, CNRS, I#$ERM, P$& Uni(ersit) Paris, 75005 Paris, "rance, anton.crombach@colle!e0de-france.fr Keywords: phylogenomics, chromatin-associated proteins, chromatin types, histone modi1cations, centromere dri(e, D. melanogaster. 1 of 46 bioRxiv preprint doi: https://doi.org/10.1101/284828; this version posted March 26, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract (221w, max 250w) In the nucleus of eukaryotic cells, !enomic 3#A associates 4ith numerous protein comple5es and RNAs, forming the chromatin landscape. -
Evolution of the D. Melanogaster Chromatin Landscape and Its Associated Proteins
bioRxiv preprint doi: https://doi.org/10.1101/284828; this version posted January 15, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Title: Evolution of the D. melanogaster chromatin landscape and its associated proteins Authors and affiliations: Elise Parey(1, 2) and Anton Crombach*(1,3,4) (1) Center for Interdisciplinary Research in Biology (CIRB), Collège de France, CNRS, INSERM, PSL Université Paris, 75005 Paris, France (2) (current address) Institut de Biologie de l’Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, PSL Université Paris, 75005 Paris, France (3) (current address) Inria, Antenne Lyon La Doua, 69603 Villeurbanne, France (4) Université de Lyon, INSA-Lyon, LIRIS, UMR 5205, 69621 Villeurbanne, France Author for Correspondence (*): Anton Crombach, Inria, Antenne Lyon La Doua, 69603 Villeurbanne, France, [email protected] 1 of 49 bioRxiv preprint doi: https://doi.org/10.1101/284828; this version posted January 15, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract (240w, max 250w) In the nucleus of eukaryotic cells, genomic DNA associates with numerous protein complexes and RNAs, forming the chromatin landscape. Through a genome-wide study of chromatin- associated proteins in Drosophila cells, five major chromatin types were identified as a refinement of the traditional binary division into hetero- and euchromatin. -
The Destinies and Destinations Meeting Review of Rnas
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Cell, Vol. 95, 451±460, November 13, 1998, Copyright 1998 by Cell Press The Destinies and Destinations Meeting Review of RNAs Tulle Hazelrigg GMC. Since Prospero is independently localized to the Department of Biological Sciences GMC, is prospero mRNA localization gratuitous? The Columbia University answer is no. While staufen mutants alone are not defec- New York, New York 10027 tive in GMC differentation, staufen is important for GMC fate, since staufen mutations enhance defects in GMC fate caused by hypomorphic prospero alleles. Thus, this The third biennial FASEB Summer Research Confer- binary cell fate decision appears to be controlled redun- ence, ªIntracellular RNA Sorting, Transport, and Local- dantly by localization of both prospero mRNA and Pros- ization,º was held June 6±11 in Snowmass, Colorado. pero to the GMC daughter cell. Topics included the biological functions of localized Early Embryonic Development RNAs, the nature of nuclear±cytoplasmic RNA transport, Several mRNAs are localized to the animal or vegetal the role of signaling pathways in RNA localization, the poles of the Xenopus oocyte, and some are implicated nature of cis-acting localization elements within RNAs, in axial patterning of the embryo (reviewed in Schnapp the proteins that bind these elements, and the cellular et al., 1997). Mary Lou King (University of Miami Medical mechanisms that achieve cytoplasmic transport and an- School) presented definitive evidence for an essential choring of RNAs to specific domains within cells. role of one vegetally localized mRNA, VegT mRNA, in early embryogenesis. -
IISER Pune Annual Report 2015-16 Chairperson Pune, India Prof
dm{f©H$ à{VdoXZ Annual Report 2015-16 ¼ããäÌãÓ¾ã ãä¶ã¹ã¥ã †Ìãâ Êãà¾ã „ÞÞã¦ã½ã ½ãÖ¦Ìã ‡ãŠñ †‡ãŠ †ñÔãñ Ìãõ—ãããä¶ã‡ãŠ ÔãâÔ©ãã¶ã ‡ãŠãè Ô©ãã¹ã¶ãã ãä•ãÔã½ãò ‚㦾ãã£ãìãä¶ã‡ãŠ ‚ã¶ãìÔãâ£ãã¶ã Ôããä֦㠂㣾ãã¹ã¶ã †Ìãâ ãäÍãàã¥ã ‡ãŠã ¹ãî¥ãùã Ôãñ †‡ãŠãè‡ãŠÀ¥ã Öãñý ãä•ã—ããÔãã ¦ã©ãã ÀÞã¶ã㦽ã‡ãЦãã Ôãñ ¾ãì§ãŠ ÔãÌããó§ã½ã Ôã½ãã‡ãŠÊã¶ã㦽ã‡ãŠ ‚㣾ãã¹ã¶ã ‡ãñŠ ½ã㣾ã½ã Ôãñ ½ããõãäÊã‡ãŠ ãäÌã—ãã¶ã ‡ãŠãñ ÀãñÞã‡ãŠ ºã¶ãã¶ããý ÊãÞããèÊãñ †Ìãâ Ôããè½ããÀãäÖ¦ã / ‚ãÔããè½ã ¹ã㟿ã‰ãŠ½ã ¦ã©ãã ‚ã¶ãìÔãâ£ãã¶ã ¹ããäÀ¾ããñ•ã¶ãã‚ããò ‡ãñŠ ½ã㣾ã½ã Ôãñ œãñ›ãè ‚ãã¾ãì ½ãò Öãè ‚ã¶ãìÔãâ£ãã¶ã àãñ¨ã ½ãò ¹ãÆÌãñÍãý Vision & Mission Establish scientific institution of the highest caliber where teaching and education are totally integrated with state-of-the- art research Make learning of basic sciences exciting through excellent integrative teaching driven by curiosity and creativity Entry into research at an early age through a flexible borderless curriculum and research projects Annual Report 2015-16 Governance Correct Citation Board of Governors IISER Pune Annual Report 2015-16 Chairperson Pune, India Prof. T.V. Ramakrishnan (till 03/12/2015) Emeritus Professor of Physics, DAE Homi Bhabha Professor, Department of Physics, Indian Institute of Science, Bengaluru Published by Dr. K. Venkataramanan (from 04/12/2015) Director and President (Engineering and Construction Projects), Dr. -
The Drosophila Speciation Factor HMR Localizes to Genomic Insulator Sites
Aus dem Biomedizinischen Centrum der Ludwig-Maximilians-Universität München Medizinische Fakultät Lehrstuhl für Molekularbiologie Vorstand: Prof. Dr. rer. nat. Peter B. Becker The Drosophila speciation factor HMR localizes to genomic insulator sites Dissertation zum Erwerb des Doktorgrades der Naturwissenschaften an der Medizinischen Fakultät der Ludwig-Maximilians-Universität München vorgelegt von Thomas Andreas Gerland aus München Jahr 2017 Gedruckt mit Genehmigung der Medizinischen Fakultät der Ludwig-Maximilians-Universität München Betreuer: Prof. Dr. rer. nat. Axel Imhof Zweitgutachter: Prof. Dr. André Brändli Dekan: Prof. Dr. med. dent. Reinhard Hickel Tag der mündlichen Prüfung: 14.11.2017 Eidesstattliche Versicherung Gerland, Thomas Andreas Ich erkläre hiermit an Eides statt, dass ich die vorliegende Dissertation mit dem Thema “The Drosophila speciation factor HMR localizes to genomic insulator sites” selbständig verfasst, mich außer der angegebenen keiner weiteren Hilfsmittel bedient und alle Erkenntnisse, die aus dem Schrifttum ganz oder annähernd übernommen sind, als solche kenntlich gemacht und nach ihrer Herkunft unter Bezeichnung der Fundstelle einzeln nachgewiesen habe. Ich erkläre des Weiteren, dass die hier vorgelegte Dissertation nicht in gleicher oder in ähnlicher Form bei einer anderen Stelle zur Erlangung eines akademischen Grades eingereicht wurde. _________________________________ _________________________________ Ort, Datum Unterschrift Doktorandin/Doktorand Wesentliche Teile dieser Arbeit sind veröffentlicht in: PLoS ONE, 2017 February 16, doi:10.1371/journal.pone.0171798 The Drosophila speciation factor HMR localizes to genomic insulator sites Gerland T. A., Sun B., Smialowski P., Lukacs A., Thomae A. W., Imhof A. Mitwirkungen: Bioinformatische und statistische Datenanalyse durchgeführt in Zusammenarbeit mit Bo Sun, Dr. Pawel Smialowski und Dr. Tobias Straub Next Generation Sequencing durchgeführt in Zusammenarbeit mit Dr. -
Structure, Function, and Evolution of a Signal-Regulated Enhancer
Structure, Function, and Evolution of a Signal-Regulated Enhancer by Christina Ione Swanson A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy (Cell and Developmental Biology) in the University of Michigan 2010 Doctoral Committee: Assistant Professor Scott E. Barolo, Chair Professor J. Douglas Engel Associate Professor Kenneth M. Cadigan Associate Professor Billy Tsai Assistant Professor Patricia J. Wittkopp To my family, for your truly unconditional love and support. And to Mike - the best thing that happened to me in grad school. ii TABLE OF CONTENTS DEDICATION .................................................................................................................. ii LIST OF FIGURES ............................................................................................................ v CHAPTER I: INTRODUCTION ....................................................................................... 1 What do enhancers look like? ................................................................................ 2 Mechanisms of enhancer function ......................................................................... 3 Enhancer structure and organization ...................................................................... 6 Unanswered questions in the field ....................................................................... 10 The D-Pax2 sparkling enhancer .......................................................................... 12 CHAPTER II: STRUCTURAL RULES -
Promoter-Proximal Chromatin Domain Insulator Protein Beaf Mediates
Louisiana State University LSU Digital Commons Faculty Publications Department of Biological Sciences 5-1-2020 Promoter-proximal chromatin domain insulator protein BeaF mediates local and long-range communication with a transcription factor and directly activates a housekeeping promoter in Drosophila Yuankai Dong Louisiana State University S. V. Satya Prakash Avva Louisiana State University Mukesh Maharjan Louisiana State University Janice Jacobi Tulane University Craig M. Hart Louisiana State University Follow this and additional works at: https://digitalcommons.lsu.edu/biosci_pubs Recommended Citation Dong, Y., Satya Prakash Avva, S., Maharjan, M., Jacobi, J., & Hart, C. (2020). Promoter-proximal chromatin domain insulator protein BeaF mediates local and long-range communication with a transcription factor and directly activates a housekeeping promoter in Drosophila. Genetics, 215 (1), 89-101. https://doi.org/ 10.1534/genetics.120.303144 This Article is brought to you for free and open access by the Department of Biological Sciences at LSU Digital Commons. It has been accepted for inclusion in Faculty Publications by an authorized administrator of LSU Digital Commons. For more information, please contact [email protected]. | INVESTIGATION Promoter-Proximal Chromatin Domain Insulator Protein BEAF Mediates Local and Long-Range Downloaded from https://academic.oup.com/genetics/article/215/1/89/5930442 by LSU Health Sciences Ctr user on 05 August 2021 Communication with a Transcription Factor and Directly Activates a Housekeeping Promoter in Drosophila -
Promoter-Proximal Chromatin Domain Insulator Protein BEAF Mediates Local and Long-Range Communication with a Transcription Facto
Genetics: Early Online, published on March 17, 2020 as 10.1534/genetics.120.303144 Promoter-proximal chromatin domain insulator protein BEAF mediates local and long- range communication with a transcription factor and directly activates a housekeeping promoter in Drosophila Yuankai Dong,* S. V. Satya Prakash Avva,* Mukesh Maharjan,*,1 Janice Jacobi,† and Craig M. Hart*,2 *Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana, 70803 †Hayward Genetics Center, Tulane University, New Orleans, Louisiana 70112 1Present address: Department of Pediatrics, Baylor College of Medicine, Houston, Texas, 77030 0 Copyright 2020. Running title: Transcriptional effects of BEAF insulator proteins Key words: BEAF; Insulators; Chromatin domains; Gene regulation; Enhancer-promoter looping; Drosophila 2Corresponding author: Department of Biological Sciences, Louisiana State University, 202 Life Sciences Bldg, Baton Rouge, Louisiana, 70803 E-mail: [email protected] 1 ABSTRACT BEAF (Boundary Element-Associated Factor) was originally identified as a Drosophila melanogaster chromatin domain insulator binding protein, suggesting a role in gene regulation through chromatin organization and dynamics. Genome-wide mapping found that BEAF usually binds near transcription start sites, often of housekeeping genes, suggesting a role in promoter function. This would be a nontraditional role for an insulator binding protein. To gain insight into molecular mechanisms of BEAF function, we identified interacting proteins using yeast 2-hybrid assays. Here we focus on the transcription factor Sry-δ. Interactions were confirmed in pull- down experiments using bacterially expressed proteins, by bimolecular fluorescence complementation, and in a genetic assay in transgenic flies. Sry-δ interacted with promoter- proximal BEAF both when bound to DNA adjacent to BEAF or over 2 kb upstream to activate a reporter gene in transient transfection experiments. -
Gene Duplication, Lineage-Specific Expansion, And
INVESTIGATION Gene Duplication, Lineage-Specific Expansion, and Subfunctionalization in the MADF-BESS Family Patterns the Drosophila Wing Hinge Vallari Shukla, Farhat Habib, Apurv Kulkarni, and Girish S. Ratnaparkhi1 Indian Institute of Science Education and Research, Pune, Maharashtra, India 411008 ABSTRACT Gene duplication, expansion, and subsequent diversification are features of the evolutionary process. Duplicated genes can be lost, modified, or altered to generate novel functions over evolutionary timescales. These features make gene duplication a powerful engine of evolutionary change. In this study, we explore these features in the MADF-BESS family of transcriptional regulators. In Drosophila melanogaster, the family contains 16 similar members, each containing an N-terminal, DNA-binding MADF domain and a C-terminal, protein-interacting, BESS domain. Phylogenetic analysis shows that members of the MADF-BESS family are expanded in the Drosophila lineage. Three members, which we name hinge1, hinge2, and hinge3 are required for wing development, with a critical role in the wing hinge. hinge1 is a negative regulator of Winglesss expression and interacts with core wing-hinge patterning genes such as teashirt, homothorax, and jing. Double knockdowns along with heterologous rescue experiments are used to demonstrate that members of the MADF-BESS family retain function in the wing hinge, in spite of expansion and diversification for over 40 million years. The wing hinge connects the blade to the thorax and has critical roles in fluttering during flight. MADF-BESS family genes appear to retain redundant functions to shape and form elements of the wing hinge in a robust and fail-safe manner. HE MADF-BESS gene family in Drosophila melanogaster in a broader sense a subgroup of the individual, indepen- Tconsists of 16 transcriptional regulators (Figure 1A), dent MADF and BESS family genes, where both MADF and coded by 16 discrete genes. -
One Hundred and First
COneO mm Hundred ENC andEM FirstENT SUNDAY, THE NINTEENTH OF MAY, TWO THOUSAND NINETEEN COMMENCEMENT PROGRAM PROCESSIONAL ... Selected Marches . The Manchester Pipe Band Daniel Pisowloski, Pipe Major Gordon Bell, Drum Sergeant CALL TO ORDER . Marc R. Forster Henry B. Plant Professor of History and College Marshal A CALL TO COMMUNITY . Angela Nzegwu Interim Director of Religious and Spiritual Programs AMERICA THE BEAUTIFUL ��������������������������������������������������������������������������������������������������� George Samuel Grotheer ’19 Constitution Brass Quintet REMARKS BY THE PRESIDENT . Katherine Bergeron President of the College SENIOR CLASS SPEAKER . Issraa Omayma Faiz ’19 PRESENTATION OF OAKES AND LOUISE AMES PRIZE . Jeffrey Cole Dean of the Faculty Professor of Anthropology PRESENTATION OF ANNA LORD STRAUSS MEDAL ���������������������������������������������������������������������� Jefferson A. Singer Dean of the College Faulk Foundation Professor of Psychology CONFERRING OF HONORARY DEGREES . President Bergeron Dean Jeff Cole DeFred G. Folts III ’82 Chair, Connecticut College Board of Trustees COMMENCEMENT ADDRESS . Martin Chalfie and Tulle Inger Hazelrigg CONFERRING OF DEGREES ���������������������������������������������������������������������������������������������������������������� President Bergeron Dean Singer Marina J. Melendez Associate Dean of the College; Dean for Juniors, Seniors and Transfers; Posse Coordinator Marc R. Forster ALUMNI ASSOCIATION WELCOME . Jamie Glanton Costello ’89 President, Board of -
Insect Transcription Factors: a Landscape of Their Structures and Biological Functions in Drosophila and Beyond
International Journal of Molecular Sciences Review Insect Transcription Factors: A Landscape of Their Structures and Biological Functions in Drosophila and beyond Zhaojiang Guo 1,† , Jianying Qin 1,2,†, Xiaomao Zhou 2 and Youjun Zhang 1,* 1 Department of Plant Protection, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China; [email protected] (Z.G.); [email protected] (J.Q.) 2 Longping Branch, Graduate School of Hunan University, Changsha 410125, China; [email protected] * Correspondence: [email protected]; Tel.: +86-10-82109518 † These authors contributed equally to this work. Received: 23 October 2018; Accepted: 16 November 2018; Published: 21 November 2018 Abstract: Transcription factors (TFs) play essential roles in the transcriptional regulation of functional genes, and are involved in diverse physiological processes in living organisms. The fruit fly Drosophila melanogaster, a simple and easily manipulated organismal model, has been extensively applied to study the biological functions of TFs and their related transcriptional regulation mechanisms. It is noteworthy that with the development of genetic tools such as CRISPR/Cas9 and the next-generation genome sequencing techniques in recent years, identification and dissection the complex genetic regulatory networks of TFs have also made great progress in other insects beyond Drosophila. However, unfortunately, there is no comprehensive review that systematically summarizes the structures and biological functions of TFs in both model and non-model insects. Here, we spend extensive effort in collecting vast related studies, and attempt to provide an impartial overview of the progress of the structure and biological functions of current documented TFs in insects, as well as the classical and emerging research methods for studying their regulatory functions.