Aplysina Aerophoba (Nardo, 1833)
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Appendix: Some Important Early Collections of West Indian Type Specimens, with Historical Notes
Appendix: Some important early collections of West Indian type specimens, with historical notes Duchassaing & Michelotti, 1864 between 1841 and 1864, we gain additional information concerning the sponge memoir, starting with the letter dated 8 May 1855. Jacob Gysbert Samuel van Breda A biography of Placide Duchassaing de Fonbressin was (1788-1867) was professor of botany in Franeker (Hol published by his friend Sagot (1873). Although an aristo land), of botany and zoology in Gent (Belgium), and crat by birth, as we learn from Michelotti's last extant then of zoology and geology in Leyden. Later he went to letter to van Breda, Duchassaing did not add de Fon Haarlem, where he was secretary of the Hollandsche bressin to his name until 1864. Duchassaing was born Maatschappij der Wetenschappen, curator of its cabinet around 1819 on Guadeloupe, in a French-Creole family of natural history, and director of Teyler's Museum of of planters. He was sent to school in Paris, first to the minerals, fossils and physical instruments. Van Breda Lycee Louis-le-Grand, then to University. He finished traveled extensively in Europe collecting fossils, especial his studies in 1844 with a doctorate in medicine and two ly in Italy. Michelotti exchanged collections of fossils additional theses in geology and zoology. He then settled with him over a long period of time, and was received as on Guadeloupe as physician. Because of social unrest foreign member of the Hollandsche Maatschappij der after the freeing of native labor, he left Guadeloupe W etenschappen in 1842. The two chief papers of Miche around 1848, and visited several islands of the Antilles lotti on fossils were published by the Hollandsche Maat (notably Nevis, Sint Eustatius, St. -
Individualistic Patterns in the Budding Morphology of the Mediterranean Demosponge Aplysina Aerophoba
Short Communication Mediterranean Marine Science Indexed in WoS (Web of Science, ISI Thomson) and SCOPUS The journal is available on line at http://www.medit-mar-sc.net DOI: http://dx.doi.org/10.12681/mms.19332 Individualistic patterns in the budding morphology of the Mediterranean demosponge Aplysina aerophoba Julio A. DÍAZ1, 2, Juancho MOVILLA3 and Pere FERRIOL1 1 Interdisciplinary Ecology Group, Biology Department, Universidad de las Islas Baleares, Palma, Spain 2 Instituto Español de Oceanografía, Centre Oceanogràfic de Balears, Palma de Mallorca, Spain 3 Instituto Español de Oceanografía, Centre Oceanogràfic de Balears, Estació d’Investigació Jaume Ferrer, Menorca, Spain Corresponding author: [email protected] Handling Editor: Eleni VOULTSIADOU Received: 10 December 2018; Accepted: 18 April 2019; Published on line: 28 May 2019 Abstract The external morphology of sponges is characterized by high plasticity, generally considered to be shaped by environmental factors, and modulated through complex morphogenetic pathways. This work shows for the first time that explants of the At- lanto-Mediterranean demosponge Aplysina aerophoba reared in aquaria under different pH and temperature conditions produce reproductive buds with a phenotype determined by the donor individual. These results suggest, therefore, that genotype may be an important factor controlling different phenotypes in this species. Keywords: Mediterranean Sea; Aplysina aerophoba; Asexual reproduction; Morphogenesis; Sponge budding. Introduction 1986). This was tested on field experiments involving tropical sponges, in which the relationship between the Sponges are invertebrates with a relatively simple phenotype and genetic identity of individuals was ver- body design, formed by an external layer, the pinaco- ified with graft histocompatibility bioassays (Hildeman derm; an inner layer, the mesohyl; and an aquiferous sys- et al., 1979; Jokiel et al., 1982; Neigel & Avisse, 1983; tem composed of canals and choanocyte chambers. -
A Soft Spot for Chemistry–Current Taxonomic and Evolutionary Implications of Sponge Secondary Metabolite Distribution
marine drugs Review A Soft Spot for Chemistry–Current Taxonomic and Evolutionary Implications of Sponge Secondary Metabolite Distribution Adrian Galitz 1 , Yoichi Nakao 2 , Peter J. Schupp 3,4 , Gert Wörheide 1,5,6 and Dirk Erpenbeck 1,5,* 1 Department of Earth and Environmental Sciences, Palaeontology & Geobiology, Ludwig-Maximilians-Universität München, 80333 Munich, Germany; [email protected] (A.G.); [email protected] (G.W.) 2 Graduate School of Advanced Science and Engineering, Waseda University, Shinjuku-ku, Tokyo 169-8555, Japan; [email protected] 3 Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl-von-Ossietzky University Oldenburg, 26111 Wilhelmshaven, Germany; [email protected] 4 Helmholtz Institute for Functional Marine Biodiversity, University of Oldenburg (HIFMB), 26129 Oldenburg, Germany 5 GeoBio-Center, Ludwig-Maximilians-Universität München, 80333 Munich, Germany 6 SNSB-Bavarian State Collection of Palaeontology and Geology, 80333 Munich, Germany * Correspondence: [email protected] Abstract: Marine sponges are the most prolific marine sources for discovery of novel bioactive compounds. Sponge secondary metabolites are sought-after for their potential in pharmaceutical applications, and in the past, they were also used as taxonomic markers alongside the difficult and homoplasy-prone sponge morphology for species delineation (chemotaxonomy). The understanding Citation: Galitz, A.; Nakao, Y.; of phylogenetic distribution and distinctiveness of metabolites to sponge lineages is pivotal to reveal Schupp, P.J.; Wörheide, G.; pathways and evolution of compound production in sponges. This benefits the discovery rate and Erpenbeck, D. A Soft Spot for yield of bioprospecting for novel marine natural products by identifying lineages with high potential Chemistry–Current Taxonomic and Evolutionary Implications of Sponge of being new sources of valuable sponge compounds. -
Naturally Prefabricated Marine Biomaterials: Isolation and Applications of Flat Chitinous 3D Scaffolds from Ianthella Labyrinthus (Demospongiae: Verongiida)
International Journal of Molecular Sciences Article Naturally Prefabricated Marine Biomaterials: Isolation and Applications of Flat Chitinous 3D Scaffolds from Ianthella labyrinthus (Demospongiae: Verongiida) Mario Schubert 1, Björn Binnewerg 1, Alona Voronkina 2 , Lyubov Muzychka 3, Marcin Wysokowski 4,5 , Iaroslav Petrenko 5, Valentine Kovalchuk 6, Mikhail Tsurkan 7 , Rajko Martinovic 8 , Nicole Bechmann 9 , Viatcheslav N. Ivanenko 10 , Andriy Fursov 5, Oleg B. Smolii 3, Jane Fromont 11 , Yvonne Joseph 5 , Stefan R. Bornstein 12,13, Marco Giovine 14, Dirk Erpenbeck 15 , Kaomei Guan 1,* and Hermann Ehrlich 5,* 1 Institute of Pharmacology and Toxicology, Technische Universität Dresden, 01307 Dresden, Germany; [email protected] (M.S.); [email protected] (B.B.) 2 Department of Pharmacy, National Pirogov Memorial Medical University, Vinnytsya, 21018 Vinnytsia, Ukraine; [email protected] 3 V.P Kukhar Institute of Bioorganic Chemistry and Petrochemistry, National Academy of Science of Ukraine, Murmanska Str. 1, 02094 Kyiv, Ukraine; [email protected] (L.M.); [email protected] (O.B.S.) 4 Faculty of Chemical Technology, Institute of Chemical Technology and Engineering, Poznan University of Technology, Berdychowo 4, 60-965 Poznan, Poland; [email protected] 5 Institute of Electronics and Sensor Materials, TU Bergakademie Freiberg, Gustav-Zeuner str. 3, 09599 Freiberg, Germany; [email protected] (I.P.); [email protected] (A.F.); [email protected] (Y.J.) 6 Department of Microbiology, -
Proposal for a Revised Classification of the Demospongiae (Porifera) Christine Morrow1 and Paco Cárdenas2,3*
Morrow and Cárdenas Frontiers in Zoology (2015) 12:7 DOI 10.1186/s12983-015-0099-8 DEBATE Open Access Proposal for a revised classification of the Demospongiae (Porifera) Christine Morrow1 and Paco Cárdenas2,3* Abstract Background: Demospongiae is the largest sponge class including 81% of all living sponges with nearly 7,000 species worldwide. Systema Porifera (2002) was the result of a large international collaboration to update the Demospongiae higher taxa classification, essentially based on morphological data. Since then, an increasing number of molecular phylogenetic studies have considerably shaken this taxonomic framework, with numerous polyphyletic groups revealed or confirmed and new clades discovered. And yet, despite a few taxonomical changes, the overall framework of the Systema Porifera classification still stands and is used as it is by the scientific community. This has led to a widening phylogeny/classification gap which creates biases and inconsistencies for the many end-users of this classification and ultimately impedes our understanding of today’s marine ecosystems and evolutionary processes. In an attempt to bridge this phylogeny/classification gap, we propose to officially revise the higher taxa Demospongiae classification. Discussion: We propose a revision of the Demospongiae higher taxa classification, essentially based on molecular data of the last ten years. We recommend the use of three subclasses: Verongimorpha, Keratosa and Heteroscleromorpha. We retain seven (Agelasida, Chondrosiida, Dendroceratida, Dictyoceratida, Haplosclerida, Poecilosclerida, Verongiida) of the 13 orders from Systema Porifera. We recommend the abandonment of five order names (Hadromerida, Halichondrida, Halisarcida, lithistids, Verticillitida) and resurrect or upgrade six order names (Axinellida, Merliida, Spongillida, Sphaerocladina, Suberitida, Tetractinellida). Finally, we create seven new orders (Bubarida, Desmacellida, Polymastiida, Scopalinida, Clionaida, Tethyida, Trachycladida). -
University of Groningen Cultivation of Bacteria from Aplysina Aerophoba
University of Groningen Cultivation of Bacteria From Aplysina aerophoba: Effects of Oxygen and Nutrient Gradients Gutleben, J.; Loureiro, C.; Ramírez Romero, L.A.; Shetty, S.; Wijffels, R.H.; Smidt, H.; Sipkema, D. Published in: Frontiers in Microbiology DOI: 10.3389/fmicb.2020.00175 IMPORTANT NOTE: You are advised to consult the publisher's version (publisher's PDF) if you wish to cite from it. Please check the document version below. Document Version Publisher's PDF, also known as Version of record Publication date: 2020 Link to publication in University of Groningen/UMCG research database Citation for published version (APA): Gutleben, J., Loureiro, C., Ramírez Romero, L. A., Shetty, S., Wijffels, R. H., Smidt, H., & Sipkema, D. (2020). Cultivation of Bacteria From Aplysina aerophoba: Effects of Oxygen and Nutrient Gradients. Frontiers in Microbiology, 11, [175]. https://doi.org/10.3389/fmicb.2020.00175 Copyright Other than for strictly personal use, it is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), unless the work is under an open content license (like Creative Commons). The publication may also be distributed here under the terms of Article 25fa of the Dutch Copyright Act, indicated by the “Taverne” license. More information can be found on the University of Groningen website: https://www.rug.nl/library/open-access/self-archiving-pure/taverne- amendment. Take-down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. -
Exploring the Microbiome of the Mediterranean Sponge Aplysina Aerophoba by Single-Cell and Metagenomics
Exploring the microbiome of the Mediterranean sponge Aplysina aerophoba by single-cell and metagenomics Untersuchungen am Mikrobiom des Mittelmeerschwamms Aplysina aerophoba mittels Einzelzell- und Metagenomik Doctoral thesis for a doctoral degree at the Graduate School of Life Sciences Julius-Maximilians-Universität Würzburg Section: Integrative Biology Submitted by Beate Magdalena Slaby from München Würzburg, March 2017 Submitted on: ……………………………………………………… Members of the Promotionskomitee Chairperson: Prof. Dr. Thomas Müller Primary Supervisor: Prof. Dr. Ute Hentschel Humeida Supervisor (Second): Prof. Dr. Thomas Dandekar Supervisor (Third): Prof. Dr. Frédéric Partensky Date of public defense: ……………………………………………………… Date of receipt of certificates: ……………………………………………………… ii Affidavit I hereby confirm that my thesis entitled ‘Exploring the microbiome of the Mediterranean sponge Aplysina aerophoba by single-cell and metagenomics’ is the result of my own work. I did not receive any help or support from commercial consultants. All sources and / or materials applied are listed and specified in the thesis. Furthermore, I confirm that this thesis has not yet been submitted as part of another examination process neither in identical nor in similar form. Place, Date Signature iii Acknowledgements I received financial support for this thesis project by a grant of the German Excellence Initiative to the Graduate School of Life Sciences of the University of Würzburg through a PhD fellowship, and from the SponGES project that has received funding from the European Union’s Horizon 2020 research and innovation program. I would like to thank: Dr. Ute Hentschel Humeida for her support and encouragement, and for providing so many extraordinary opportunities. Dr. Thomas Dandekar and Dr. Frédéric Partensky for the supervision and a number of very helpful discussions. -
Bioactive Bromotyrosine Derivatives from the Pacific Marine
marine drugs Article Bioactive Bromotyrosine Derivatives from the Pacific Marine Sponge Suberea clavata (Pulitzer-Finali, 1982) Céline Moriou 1, Damien Lacroix 1, Sylvain Petek 2,* , Amr El-Demerdash 1 , Rozenn Trepos 2 , Tinihauarii Mareva Leu 3, Cristina Florean 4, Marc Diederich 5 , Claire Hellio 2 ,Cécile Debitus 2 and Ali Al-Mourabit 1,* 1 CNRS, Institut de Chimie des Substances Naturelles, Université Paris-Saclay, F-91190 Gif-sur-Yvette, France; [email protected] (C.M.); [email protected] (D.L.); [email protected] (A.E.-D.) 2 IRD, CNRS, Ifremer, LEMAR, Univ Brest, F-29280 Plouzane, France; [email protected] (R.T.); [email protected] (C.H.); [email protected] (C.D.) 3 IRD, Ifremer, ILM, EIO, Univ de la Polynésie française, F-98713 Papeete, French Polynesia; [email protected] 4 Laboratoire de Biologie Moléculaire et Cellulaire du Cancer, Hôpital Kirchberg, 9, rue Edward Steichen, L-2540 Luxembourg, Luxembourg; cristina.fl[email protected] 5 Department of Pharmacy, Research Institute of Pharmaceutical Sciences, College of Pharmacy, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul 08826, Korea; [email protected] * Correspondence: [email protected] (S.P.); [email protected] (A.A.-M.); Tel.: +33-298-498-651 (S.P.); +33-169-824-585 (A.A.-M.) Abstract: Chemical investigation of the South-Pacific marine sponge Suberea clavata led to the isola- tion of eight new bromotyrosine metabolites named subereins 1–8 (2–9) along with twelve known co-isolated congeners. The detailed configuration determination of the first representative major compound of this family 11-epi-fistularin-3 (11R,17S)(1) is described. -
Sponge (Porifera)
Sponge (Porifera) species from the Mediterranean coast of Turkey (Levantine Sea, eastern Mediterranean), with a checklist of sponges from the coasts of Turkey Turk J Zool 2012; 36(4) 460-464 © TÜBİTAK Research Article doi:10.3906/zoo-1107-4 Sponge (Porifera) species from the Mediterranean coast of Turkey (Levantine Sea, eastern Mediterranean), with a checklist of sponges from the coasts of Turkey Alper EVCEN*, Melih Ertan ÇINAR Department of Hydrobiology, Faculty of Fisheries, Ege University, 35100 Bornova, İzmir - TURKEY Received: 05.07.2011 Abstract: Th e present study deals with sponge species collected along the Mediterranean coast of Turkey in 2005. A total of 29 species belonging to 19 families were encountered, of which Phorbas plumosus is a new record for the eastern Mediterranean, 8 species are new records for the marine fauna of Turkey (Clathrina clathrus, Spirastrella cunctatrix, Desmacella inornata, Phorbas plumosus, Hymerhabdia intermedia, Haliclona fulva, Petrosia vansoesti, and Ircinia dendroides), and 19 species are new records for the Levantine Sea (C. clathrus, Sycon raphanus, Erylus discophorus, Alectona millari, Cliona celata, Diplastrella bistellata, Mycale contareni, Mycale cf. rotalis, Mycale lingua, D. inornata, P. plumosus, Phorbas fi ctitius, Lissodendoryx isodictyalis, Hymerhabdia intermedia, H. fulva, P. vansoesti, I. dendroides, Sarcotragus spinosulus, and Aplysina aerophoba). Th e morphological and distributional features of the species that are new to the Turkish marine fauna are presented. In addition, a check-list of the sponge species that have been reported from the coasts of Turkey to date is provided. Key words: Sponges, Porifera, biodiversity, distribution, Levantine Sea, Turkey, eastern Mediterranean Türkiye’nin Akdeniz kıyılarından (Levantin Denizi, doğu Akdeniz) sünger (Porifera) türleri ile Türkiye kıyılarından kaydedilen süngerlerin kontrol listesi Özet: Bu çalışma, 2005 yılında Türkiye’nin Akdeniz kıyılarında bulunan bazı sünger türlerini ele almaktadır. -
Marine Rare Actinomycetes: a Promising Source of Structurally Diverse and Unique Novel Natural Products
Review Marine Rare Actinomycetes: A Promising Source of Structurally Diverse and Unique Novel Natural Products Ramesh Subramani 1 and Detmer Sipkema 2,* 1 School of Biological and Chemical Sciences, Faculty of Science, Technology & Environment, The University of the South Pacific, Laucala Campus, Private Mail Bag, Suva, Republic of Fiji; [email protected] 2 Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, 6708 WE Wageningen, The Netherlands * Correspondence: [email protected]; Tel.: +31-317-483113 Received: 7 March 2019; Accepted: 23 April 2019; Published: 26 April 2019 Abstract: Rare actinomycetes are prolific in the marine environment; however, knowledge about their diversity, distribution and biochemistry is limited. Marine rare actinomycetes represent a rather untapped source of chemically diverse secondary metabolites and novel bioactive compounds. In this review, we aim to summarize the present knowledge on the isolation, diversity, distribution and natural product discovery of marine rare actinomycetes reported from mid-2013 to 2017. A total of 97 new species, representing 9 novel genera and belonging to 27 families of marine rare actinomycetes have been reported, with the highest numbers of novel isolates from the families Pseudonocardiaceae, Demequinaceae, Micromonosporaceae and Nocardioidaceae. Additionally, this study reviewed 167 new bioactive compounds produced by 58 different rare actinomycete species representing 24 genera. Most of the compounds produced by the marine rare actinomycetes present antibacterial, antifungal, antiparasitic, anticancer or antimalarial activities. The highest numbers of natural products were derived from the genera Nocardiopsis, Micromonospora, Salinispora and Pseudonocardia. Members of the genus Micromonospora were revealed to be the richest source of chemically diverse and unique bioactive natural products. -
Genomic Insights Into the Lifestyles of Thaumarchaeota Inside Sponges
fmicb-11-622824 January 16, 2021 Time: 10:0 # 1 ORIGINAL RESEARCH published: 11 January 2021 doi: 10.3389/fmicb.2020.622824 Genomic Insights Into the Lifestyles of Thaumarchaeota Inside Sponges Markus Haber1,2, Ilia Burgsdorf1, Kim M. Handley3, Maxim Rubin-Blum4 and Laura Steindler1* 1 Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, Israel, 2 Department of Aquatic Microbial Ecology, Institute of Hydrobiology, Biology Centre CAS, Ceskéˇ Budejovice,ˇ Czechia, 3 School of Biological Sciences, The University of Auckland, Auckland, New Zealand, 4 Israel Oceanographic and Limnological Research Institute, Haifa, Israel Sponges are among the oldest metazoans and their success is partly due to their abundant and diverse microbial symbionts. They are one of the few animals that have Thaumarchaeota symbionts. Here we compare genomes of 11 Thaumarchaeota sponge symbionts, including three new genomes, to free-living ones. Like their free- living counterparts, sponge-associated Thaumarchaeota can oxidize ammonia, fix carbon, and produce several vitamins. Adaptions to life inside the sponge host include enrichment in transposases, toxin-antitoxin systems and restriction modifications Edited by: systems, enrichments previously reported also from bacterial sponge symbionts. Most Andreas Teske, University of North Carolina at Chapel thaumarchaeal sponge symbionts lost the ability to synthesize rhamnose, which likely Hill, United States alters their cell surface and allows them to evade digestion by the host. All but Reviewed by: one archaeal sponge symbiont encoded a high-affinity, branched-chain amino acid Lu Fan, Southern University of Science transporter system that was absent from the analyzed free-living thaumarchaeota and Technology, China suggesting a mixotrophic lifestyle for the sponge symbionts. -
New Source of 3D Chitin Scaffolds: the Red Sea Demosponge Pseudoceratina Arabica (Pseudoceratinidae, Verongiida)
marine drugs Article New Source of 3D Chitin Scaffolds: The Red Sea Demosponge Pseudoceratina arabica (Pseudoceratinidae, Verongiida) Lamiaa A. Shaala 1,2,*, Hani Z. Asfour 3, Diaa T. A. Youssef 4,5 , Sonia Z˙ ółtowska-Aksamitowska 6,7, Marcin Wysokowski 6,7, Mikhail Tsurkan 8 , Roberta Galli 9 , Heike Meissner 10, Iaroslav Petrenko 7, Konstantin Tabachnick 11, Viatcheslav N. Ivanenko 12 , Nicole Bechmann 13 , Lyubov V. Muzychka 14, Oleg B. Smolii 14, Rajko Martinovi´c 15, Yvonne Joseph 7 , Teofil Jesionowski 6 and Hermann Ehrlich 7,* 1 Natural Products Unit, King Fahd Medical Research Centre, King Abdulaziz University, Jeddah 21589, Saudi Arabia 2 Suez Canal University Hospital, Suez Canal University, Ismailia 41522, Egypt 3 Department of Medical Parasitology, Faculty of Medicine, Princess Al-Jawhara Center of Excellence in Research of Hereditary Disorders, King Abdulaziz University, Jeddah 21589, Saudi Arabia; [email protected] 4 Department of Natural Products, Faculty of Pharmacy, King Abdulaziz University, Jeddah 21589, Saudi Arabia; [email protected] 5 Department of Pharmacognosy, Faculty of Pharmacy, Suez Canal University, Ismailia 41522, Egypt 6 Institute of Chemical Technology and Engineering, Faculty of Chemical Technology, Poznan University of Technology, Poznan 60965, Poland; [email protected] (S.Z.-A.);˙ [email protected] (M.W.); teofi[email protected] (T.J.) 7 Institute of Electronics and Sensor Materials, Technische Universität Bergakademie-Freiberg, Freiberg 09599, Germany; [email protected] (I.P.); [email protected] (Y.J.) 8 Leibniz Institute of Polymer Research Dresden, Dresden 01069, Germany; [email protected] 9 Clinical Sensoring and Monitoring, Department of Anesthesiology and Intensive Care Medicine, Faculty of Medicine, Technische Universität Dresden, Dresden 01307, Germany; [email protected] 10 Department of Prosthetic Dentistry, Faculty of Medicine, Technische Universität Dresden, Dresden 01307, Germany; [email protected] 11 P.P.