Bioactive Bromotyrosine Derivatives from the Pacific Marine
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A Soft Spot for Chemistry–Current Taxonomic and Evolutionary Implications of Sponge Secondary Metabolite Distribution
marine drugs Review A Soft Spot for Chemistry–Current Taxonomic and Evolutionary Implications of Sponge Secondary Metabolite Distribution Adrian Galitz 1 , Yoichi Nakao 2 , Peter J. Schupp 3,4 , Gert Wörheide 1,5,6 and Dirk Erpenbeck 1,5,* 1 Department of Earth and Environmental Sciences, Palaeontology & Geobiology, Ludwig-Maximilians-Universität München, 80333 Munich, Germany; [email protected] (A.G.); [email protected] (G.W.) 2 Graduate School of Advanced Science and Engineering, Waseda University, Shinjuku-ku, Tokyo 169-8555, Japan; [email protected] 3 Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl-von-Ossietzky University Oldenburg, 26111 Wilhelmshaven, Germany; [email protected] 4 Helmholtz Institute for Functional Marine Biodiversity, University of Oldenburg (HIFMB), 26129 Oldenburg, Germany 5 GeoBio-Center, Ludwig-Maximilians-Universität München, 80333 Munich, Germany 6 SNSB-Bavarian State Collection of Palaeontology and Geology, 80333 Munich, Germany * Correspondence: [email protected] Abstract: Marine sponges are the most prolific marine sources for discovery of novel bioactive compounds. Sponge secondary metabolites are sought-after for their potential in pharmaceutical applications, and in the past, they were also used as taxonomic markers alongside the difficult and homoplasy-prone sponge morphology for species delineation (chemotaxonomy). The understanding Citation: Galitz, A.; Nakao, Y.; of phylogenetic distribution and distinctiveness of metabolites to sponge lineages is pivotal to reveal Schupp, P.J.; Wörheide, G.; pathways and evolution of compound production in sponges. This benefits the discovery rate and Erpenbeck, D. A Soft Spot for yield of bioprospecting for novel marine natural products by identifying lineages with high potential Chemistry–Current Taxonomic and Evolutionary Implications of Sponge of being new sources of valuable sponge compounds. -
Naturally Prefabricated Marine Biomaterials: Isolation and Applications of Flat Chitinous 3D Scaffolds from Ianthella Labyrinthus (Demospongiae: Verongiida)
International Journal of Molecular Sciences Article Naturally Prefabricated Marine Biomaterials: Isolation and Applications of Flat Chitinous 3D Scaffolds from Ianthella labyrinthus (Demospongiae: Verongiida) Mario Schubert 1, Björn Binnewerg 1, Alona Voronkina 2 , Lyubov Muzychka 3, Marcin Wysokowski 4,5 , Iaroslav Petrenko 5, Valentine Kovalchuk 6, Mikhail Tsurkan 7 , Rajko Martinovic 8 , Nicole Bechmann 9 , Viatcheslav N. Ivanenko 10 , Andriy Fursov 5, Oleg B. Smolii 3, Jane Fromont 11 , Yvonne Joseph 5 , Stefan R. Bornstein 12,13, Marco Giovine 14, Dirk Erpenbeck 15 , Kaomei Guan 1,* and Hermann Ehrlich 5,* 1 Institute of Pharmacology and Toxicology, Technische Universität Dresden, 01307 Dresden, Germany; [email protected] (M.S.); [email protected] (B.B.) 2 Department of Pharmacy, National Pirogov Memorial Medical University, Vinnytsya, 21018 Vinnytsia, Ukraine; [email protected] 3 V.P Kukhar Institute of Bioorganic Chemistry and Petrochemistry, National Academy of Science of Ukraine, Murmanska Str. 1, 02094 Kyiv, Ukraine; [email protected] (L.M.); [email protected] (O.B.S.) 4 Faculty of Chemical Technology, Institute of Chemical Technology and Engineering, Poznan University of Technology, Berdychowo 4, 60-965 Poznan, Poland; [email protected] 5 Institute of Electronics and Sensor Materials, TU Bergakademie Freiberg, Gustav-Zeuner str. 3, 09599 Freiberg, Germany; [email protected] (I.P.); [email protected] (A.F.); [email protected] (Y.J.) 6 Department of Microbiology, -
Proposal for a Revised Classification of the Demospongiae (Porifera) Christine Morrow1 and Paco Cárdenas2,3*
Morrow and Cárdenas Frontiers in Zoology (2015) 12:7 DOI 10.1186/s12983-015-0099-8 DEBATE Open Access Proposal for a revised classification of the Demospongiae (Porifera) Christine Morrow1 and Paco Cárdenas2,3* Abstract Background: Demospongiae is the largest sponge class including 81% of all living sponges with nearly 7,000 species worldwide. Systema Porifera (2002) was the result of a large international collaboration to update the Demospongiae higher taxa classification, essentially based on morphological data. Since then, an increasing number of molecular phylogenetic studies have considerably shaken this taxonomic framework, with numerous polyphyletic groups revealed or confirmed and new clades discovered. And yet, despite a few taxonomical changes, the overall framework of the Systema Porifera classification still stands and is used as it is by the scientific community. This has led to a widening phylogeny/classification gap which creates biases and inconsistencies for the many end-users of this classification and ultimately impedes our understanding of today’s marine ecosystems and evolutionary processes. In an attempt to bridge this phylogeny/classification gap, we propose to officially revise the higher taxa Demospongiae classification. Discussion: We propose a revision of the Demospongiae higher taxa classification, essentially based on molecular data of the last ten years. We recommend the use of three subclasses: Verongimorpha, Keratosa and Heteroscleromorpha. We retain seven (Agelasida, Chondrosiida, Dendroceratida, Dictyoceratida, Haplosclerida, Poecilosclerida, Verongiida) of the 13 orders from Systema Porifera. We recommend the abandonment of five order names (Hadromerida, Halichondrida, Halisarcida, lithistids, Verticillitida) and resurrect or upgrade six order names (Axinellida, Merliida, Spongillida, Sphaerocladina, Suberitida, Tetractinellida). Finally, we create seven new orders (Bubarida, Desmacellida, Polymastiida, Scopalinida, Clionaida, Tethyida, Trachycladida). -
Exploring the Microbiome of the Mediterranean Sponge Aplysina Aerophoba by Single-Cell and Metagenomics
Exploring the microbiome of the Mediterranean sponge Aplysina aerophoba by single-cell and metagenomics Untersuchungen am Mikrobiom des Mittelmeerschwamms Aplysina aerophoba mittels Einzelzell- und Metagenomik Doctoral thesis for a doctoral degree at the Graduate School of Life Sciences Julius-Maximilians-Universität Würzburg Section: Integrative Biology Submitted by Beate Magdalena Slaby from München Würzburg, March 2017 Submitted on: ……………………………………………………… Members of the Promotionskomitee Chairperson: Prof. Dr. Thomas Müller Primary Supervisor: Prof. Dr. Ute Hentschel Humeida Supervisor (Second): Prof. Dr. Thomas Dandekar Supervisor (Third): Prof. Dr. Frédéric Partensky Date of public defense: ……………………………………………………… Date of receipt of certificates: ……………………………………………………… ii Affidavit I hereby confirm that my thesis entitled ‘Exploring the microbiome of the Mediterranean sponge Aplysina aerophoba by single-cell and metagenomics’ is the result of my own work. I did not receive any help or support from commercial consultants. All sources and / or materials applied are listed and specified in the thesis. Furthermore, I confirm that this thesis has not yet been submitted as part of another examination process neither in identical nor in similar form. Place, Date Signature iii Acknowledgements I received financial support for this thesis project by a grant of the German Excellence Initiative to the Graduate School of Life Sciences of the University of Würzburg through a PhD fellowship, and from the SponGES project that has received funding from the European Union’s Horizon 2020 research and innovation program. I would like to thank: Dr. Ute Hentschel Humeida for her support and encouragement, and for providing so many extraordinary opportunities. Dr. Thomas Dandekar and Dr. Frédéric Partensky for the supervision and a number of very helpful discussions. -
Genomic Insights Into the Lifestyles of Thaumarchaeota Inside Sponges
fmicb-11-622824 January 16, 2021 Time: 10:0 # 1 ORIGINAL RESEARCH published: 11 January 2021 doi: 10.3389/fmicb.2020.622824 Genomic Insights Into the Lifestyles of Thaumarchaeota Inside Sponges Markus Haber1,2, Ilia Burgsdorf1, Kim M. Handley3, Maxim Rubin-Blum4 and Laura Steindler1* 1 Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, Israel, 2 Department of Aquatic Microbial Ecology, Institute of Hydrobiology, Biology Centre CAS, Ceskéˇ Budejovice,ˇ Czechia, 3 School of Biological Sciences, The University of Auckland, Auckland, New Zealand, 4 Israel Oceanographic and Limnological Research Institute, Haifa, Israel Sponges are among the oldest metazoans and their success is partly due to their abundant and diverse microbial symbionts. They are one of the few animals that have Thaumarchaeota symbionts. Here we compare genomes of 11 Thaumarchaeota sponge symbionts, including three new genomes, to free-living ones. Like their free- living counterparts, sponge-associated Thaumarchaeota can oxidize ammonia, fix carbon, and produce several vitamins. Adaptions to life inside the sponge host include enrichment in transposases, toxin-antitoxin systems and restriction modifications Edited by: systems, enrichments previously reported also from bacterial sponge symbionts. Most Andreas Teske, University of North Carolina at Chapel thaumarchaeal sponge symbionts lost the ability to synthesize rhamnose, which likely Hill, United States alters their cell surface and allows them to evade digestion by the host. All but Reviewed by: one archaeal sponge symbiont encoded a high-affinity, branched-chain amino acid Lu Fan, Southern University of Science transporter system that was absent from the analyzed free-living thaumarchaeota and Technology, China suggesting a mixotrophic lifestyle for the sponge symbionts. -
New Source of 3D Chitin Scaffolds: the Red Sea Demosponge Pseudoceratina Arabica (Pseudoceratinidae, Verongiida)
marine drugs Article New Source of 3D Chitin Scaffolds: The Red Sea Demosponge Pseudoceratina arabica (Pseudoceratinidae, Verongiida) Lamiaa A. Shaala 1,2,*, Hani Z. Asfour 3, Diaa T. A. Youssef 4,5 , Sonia Z˙ ółtowska-Aksamitowska 6,7, Marcin Wysokowski 6,7, Mikhail Tsurkan 8 , Roberta Galli 9 , Heike Meissner 10, Iaroslav Petrenko 7, Konstantin Tabachnick 11, Viatcheslav N. Ivanenko 12 , Nicole Bechmann 13 , Lyubov V. Muzychka 14, Oleg B. Smolii 14, Rajko Martinovi´c 15, Yvonne Joseph 7 , Teofil Jesionowski 6 and Hermann Ehrlich 7,* 1 Natural Products Unit, King Fahd Medical Research Centre, King Abdulaziz University, Jeddah 21589, Saudi Arabia 2 Suez Canal University Hospital, Suez Canal University, Ismailia 41522, Egypt 3 Department of Medical Parasitology, Faculty of Medicine, Princess Al-Jawhara Center of Excellence in Research of Hereditary Disorders, King Abdulaziz University, Jeddah 21589, Saudi Arabia; [email protected] 4 Department of Natural Products, Faculty of Pharmacy, King Abdulaziz University, Jeddah 21589, Saudi Arabia; [email protected] 5 Department of Pharmacognosy, Faculty of Pharmacy, Suez Canal University, Ismailia 41522, Egypt 6 Institute of Chemical Technology and Engineering, Faculty of Chemical Technology, Poznan University of Technology, Poznan 60965, Poland; [email protected] (S.Z.-A.);˙ [email protected] (M.W.); teofi[email protected] (T.J.) 7 Institute of Electronics and Sensor Materials, Technische Universität Bergakademie-Freiberg, Freiberg 09599, Germany; [email protected] (I.P.); [email protected] (Y.J.) 8 Leibniz Institute of Polymer Research Dresden, Dresden 01069, Germany; [email protected] 9 Clinical Sensoring and Monitoring, Department of Anesthesiology and Intensive Care Medicine, Faculty of Medicine, Technische Universität Dresden, Dresden 01307, Germany; [email protected] 10 Department of Prosthetic Dentistry, Faculty of Medicine, Technische Universität Dresden, Dresden 01307, Germany; [email protected] 11 P.P. -
Isolation of Chitin from Aplysina Aerophoba Using a Microwave Approach
ISOLATION OF CHITIN FROM APLYSINA AEROPHOBA USING A MICROWAVE APPROACH Christine Klinger1,2, Sonia Żółtowska-Aksamitowska2,3, Teofil Jesionowski3,* 1 - Institute of Physical Chemistry, TU Bergakademie-Freiberg, 2 - Institute of Electronics and Sensor Materials, TU Bergakademie Freiberg, 3 - Institute of Chemical Technology and Engineering, Faculty of Chemical Technology, Poznan University of Technology, Berdychowo 4, 60965 Poznan, Poland e-mail: [email protected] Abstract Chitin of poriferan origin represents a unique renewable source of three-dimensional (3D) microtubular centimetre-sized scaffolds, which have recently been recognized as having applications in biomedicine, tissue engineering, and extreme biomimetics. The standard method of chitin isolation from sponges requires concentrated solutions of acids and bases and remains a time-consuming process (lasting up to seven days). Here, for the first time, we propose a new microwave-based express method for the isolation of chitinous scaffolds from the marine demosponge Aplysina aerophoba cultivated under marine farming conditions. Our method requires only 41% of the time of the classical process and does not lead to the deacetylation of chitin to chitosan. Alterations in microstructure and chemical composition due to the microwave treatment were investigated using various analytical approaches, including Calcofluor White staining, chitinase digestion, scattering electron microscopy, and Raman and ATR-FTIR spectroscopy. It was demonstrated that microwave irradiation has no impact on the chemical composition of the isolated chitin. Keywords: chitin isolation, marine sponge, microwave treatment, Aplysina aerophoba Received: 03.01.2019 Accepted: 05.04.2019 Progress on Chemistry and Application of Chitin and its Derivatives, Volume XXIV, 2019 DOI: 10.15259/PCACD.24.005 61 Ch. -
Bioactive Bromotyrosine Derivatives from The
Bioactive Bromotyrosine Derivatives from the Pacific Marine Sponge Suberea clavata (Pulitzer-Finali, 1982) Ali Al-Mourabit, Damien Lacroix, Sylvain Petek, Amr El-Demerdash, Rozenn Trepos, Tinihauarii Mareva Leu, Cristina Florean, Marc Diederich, Claire Hellio, Cécile Debitus, et al. To cite this version: Ali Al-Mourabit, Damien Lacroix, Sylvain Petek, Amr El-Demerdash, Rozenn Trepos, et al.. Bioactive Bromotyrosine Derivatives from the Pacific Marine Sponge Suberea clavata (Pulitzer-Finali, 1982). Marine drugs, MDPI, 2021, 19 (3), pp.143. 10.3390/md19030143. hal-03319162 HAL Id: hal-03319162 https://hal.archives-ouvertes.fr/hal-03319162 Submitted on 12 Aug 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License marine drugs Article Bioactive Bromotyrosine Derivatives from the Pacific Marine Sponge Suberea clavata (Pulitzer-Finali, 1982) Céline Moriou 1, Damien Lacroix 1, Sylvain Petek 2,* , Amr El-Demerdash 1 , Rozenn Trepos 2 , Tinihauarii Mareva Leu 3, Cristina Florean 4, Marc -
Express Method for Isolation of Ready-To-Use 3D Chitin Scaffolds from Aplysina Archeri (Aplysineidae: Verongiida) Demosponge
marine drugs Article Express Method for Isolation of Ready-to-Use 3D Chitin Scaffolds from Aplysina archeri (Aplysineidae: Verongiida) Demosponge Christine Klinger 1, Sonia Z˙ ółtowska-Aksamitowska 2,3, Marcin Wysokowski 2,3,*, Mikhail V. Tsurkan 4 , Roberta Galli 5 , Iaroslav Petrenko 3, Tomasz Machałowski 2, Alexander Ereskovsky 6,7 , Rajko Martinovi´c 8, Lyubov Muzychka 9, Oleg B. Smolii 9, Nicole Bechmann 10 , Viatcheslav Ivanenko 11,12 , Peter J. Schupp 13 , Teofil Jesionowski 2 , Marco Giovine 14, Yvonne Joseph 3 , Stefan R. Bornstein 15,16, Alona Voronkina 17 and Hermann Ehrlich 3,* 1 Institute of Physical Chemistry, TU Bergakademie-Freiberg, Leipziger str. 29, 09559 Freiberg, Germany; [email protected] 2 Institute of Chemical Technology and Engineering, Faculty of Chemical Technology, Poznan University of Technology, Berdychowo 4, 61131 Poznan, Poland; [email protected] (S.Z.-A.);˙ [email protected] (T.M.); teofi[email protected] (T.J.) 3 Institute of Electronics and Sensor Materials, TU Bergakademie Freiberg, Gustav Zeuner Str. 3, 09599 Freiberg, Germany; [email protected] (I.P.); [email protected] (Y.J.) 4 Leibnitz Institute of Polymer Research Dresden, 01069 Dresden, Germany; [email protected] 5 Clinical Sensoring and Monitoring, Department of Anesthesiology and Intensive Care Medicine, Faculty of Medicine, Technische Universität Dresden, 01307 Dresden, Germany; [email protected] 6 Institut Méditerranéen de Biodiversité et d’Ecologie (IMBE), CNRS, IRD, Aix -
Incorporation, Morphology, and Extinction of Framework-Building
University of Wisconsin Milwaukee UWM Digital Commons Theses and Dissertations May 2019 Incorporation, Morphology, and Extinction of Framework-Building Metazoans in Early Cambrian Reef Ecosystems from the Western Usa and Mongolia and Their ffecE ts on Reef Diversity David Russell Cordie University of Wisconsin-Milwaukee Follow this and additional works at: https://dc.uwm.edu/etd Part of the Ecology and Evolutionary Biology Commons, Geology Commons, and the Paleontology Commons Recommended Citation Cordie, David Russell, "Incorporation, Morphology, and Extinction of Framework-Building Metazoans in Early Cambrian Reef Ecosystems from the Western Usa and Mongolia and Their Effects on Reef Diversity" (2019). Theses and Dissertations. 2055. https://dc.uwm.edu/etd/2055 This Dissertation is brought to you for free and open access by UWM Digital Commons. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of UWM Digital Commons. For more information, please contact [email protected]. INCORPORATION, MORPHOLOGY, AND EXTINCTION OF FRAMEWORK-BUILDING METAZOANS IN EARLY CAMBRIAN REEF ECOSYSTEMS FROM THE WESTERN USA AND MONGOLIA AND THEIR EFFECTS ON REEF DIVERSITY by David Russell Cordie A Dissertation Submitted in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy in Geosciences at The University of Wisconsin-Milwaukee May 2019 ABSTRACT INCORPORATION, MORPHOLOGY, AND EXTINCTION OF FRAMEWORK-BUILDING METAZOANS IN EARLY CAMBRIAN REEF ECOSYSTEMS FROM THE WESTERN USA AND MONGOLIA AND THEIR EFFECTS ON REEF DIVERSITY by David Russell Cordie The University of Wisconsin-Milwaukee, 2019 Under the Supervision of Professor Stephen Q. Dornbos The early Cambrian represents an important transition in the evolution of life, perhaps most vividly exemplified by reef ecosystems as they changed from microbial-supported to metazoan-supported framework reefs. -
Express Method for Isolation of Ready-To
Express Method for Isolation of Ready-to-Use 3D Chitin Scaffolds from Aplysina archeri (Aplysineidae: Verongiida) Demosponge Christine Klinger, Sonia Żóltowska-Aksamitowska, Marcin Wysokowski, Mikhail Tsurkan, Roberta Galli, Iaroslav Petrenko, Tomasz Machalowski, Alexander Ereskovsky, Rajko Martinović, Lyubov Muzychka, et al. To cite this version: Christine Klinger, Sonia Żóltowska-Aksamitowska, Marcin Wysokowski, Mikhail Tsurkan, Roberta Galli, et al.. Express Method for Isolation of Ready-to-Use 3D Chitin Scaffolds from Aplysina archeri (Aplysineidae: Verongiida) Demosponge. Marine drugs, MDPI, 2019, 17 (2), pp.E131. 10.3390/md17020131. hal-02047527 HAL Id: hal-02047527 https://hal.archives-ouvertes.fr/hal-02047527 Submitted on 26 Mar 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. marine drugs Article Express Method for Isolation of Ready-to-Use 3D Chitin Scaffolds from Aplysina archeri (Aplysineidae: Verongiida) Demosponge Christine Klinger 1, Sonia Z˙ ółtowska-Aksamitowska 2,3, Marcin Wysokowski 2,3,*, Mikhail V. Tsurkan 4 , Roberta Galli 5 , Iaroslav Petrenko 3, Tomasz Machałowski 2, Alexander Ereskovsky 6,7 , Rajko Martinovi´c 8, Lyubov Muzychka 9, Oleg B. Smolii 9, Nicole Bechmann 10 , Viatcheslav Ivanenko 11,12 , Peter J. Schupp 13 , Teofil Jesionowski 2 , Marco Giovine 14, Yvonne Joseph 3 , Stefan R. -
On the Phylogeny of Dictyoceratid Sponges
CORE Metadata, citation and similar papers at core.ac.uk Provided by Open Access LMU Received: 15 May 2019 | Revised: 6 September 2019 | Accepted: 16 September 2019 DOI: 10.1111/jzs.12351 ORIGINAL ARTICLE Soft sponges with tricky tree: On the phylogeny of dictyoceratid sponges Dirk Erpenbeck1,2 | Adrian Galitz1 | Merrick Ekins3,4 | Steve de C. Cook5 | Rob W. M. van Soest6 | John N. A. Hooper3,7 | Gert Wörheide1,2,8 1Department of Earth- and Environmental Sciences, Palaeontology & Geobiology, Abstract Ludwig-Maximilians-Universität München, Keratose (horny) sponges constitute a very difficult group of Porifera in terms of Munich, Germany taxonomy due to their paucity of diagnostic morphological features. (Most) kera- 2GeoBio-Center, Ludwig-Maximilians- Universität München, Munich, Germany tose sponges possess no mineral skeletal elements, but an arrangement of organic 3Biodiversity Program, Queensland (spongin) fibers, with little taxonomic or phylogenetic information. Molecular phylo- Museum, South Brisbane, QLD, Australia genetics have targeted this evolutionary and biochemically important lineage numer- 4School of Biological Sciences, University of Queensland, St Lucia, QLD, Australia ous times, but the conservative nature of popular markers combined with ambiguous 5Formerly Department of Zoology, School of identification of the sponge material has so far prevented any robust phylogeny. In Biological Sciences, University of Auckland, the following study, we provide a phylogenetic hypothesis of the keratose order Auckland, New Zealand