Individualistic Patterns in the Budding Morphology of the Mediterranean Demosponge Aplysina Aerophoba
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Appendix: Some Important Early Collections of West Indian Type Specimens, with Historical Notes
Appendix: Some important early collections of West Indian type specimens, with historical notes Duchassaing & Michelotti, 1864 between 1841 and 1864, we gain additional information concerning the sponge memoir, starting with the letter dated 8 May 1855. Jacob Gysbert Samuel van Breda A biography of Placide Duchassaing de Fonbressin was (1788-1867) was professor of botany in Franeker (Hol published by his friend Sagot (1873). Although an aristo land), of botany and zoology in Gent (Belgium), and crat by birth, as we learn from Michelotti's last extant then of zoology and geology in Leyden. Later he went to letter to van Breda, Duchassaing did not add de Fon Haarlem, where he was secretary of the Hollandsche bressin to his name until 1864. Duchassaing was born Maatschappij der Wetenschappen, curator of its cabinet around 1819 on Guadeloupe, in a French-Creole family of natural history, and director of Teyler's Museum of of planters. He was sent to school in Paris, first to the minerals, fossils and physical instruments. Van Breda Lycee Louis-le-Grand, then to University. He finished traveled extensively in Europe collecting fossils, especial his studies in 1844 with a doctorate in medicine and two ly in Italy. Michelotti exchanged collections of fossils additional theses in geology and zoology. He then settled with him over a long period of time, and was received as on Guadeloupe as physician. Because of social unrest foreign member of the Hollandsche Maatschappij der after the freeing of native labor, he left Guadeloupe W etenschappen in 1842. The two chief papers of Miche around 1848, and visited several islands of the Antilles lotti on fossils were published by the Hollandsche Maat (notably Nevis, Sint Eustatius, St. -
University of Groningen Cultivation of Bacteria from Aplysina Aerophoba
University of Groningen Cultivation of Bacteria From Aplysina aerophoba: Effects of Oxygen and Nutrient Gradients Gutleben, J.; Loureiro, C.; Ramírez Romero, L.A.; Shetty, S.; Wijffels, R.H.; Smidt, H.; Sipkema, D. Published in: Frontiers in Microbiology DOI: 10.3389/fmicb.2020.00175 IMPORTANT NOTE: You are advised to consult the publisher's version (publisher's PDF) if you wish to cite from it. Please check the document version below. Document Version Publisher's PDF, also known as Version of record Publication date: 2020 Link to publication in University of Groningen/UMCG research database Citation for published version (APA): Gutleben, J., Loureiro, C., Ramírez Romero, L. A., Shetty, S., Wijffels, R. H., Smidt, H., & Sipkema, D. (2020). Cultivation of Bacteria From Aplysina aerophoba: Effects of Oxygen and Nutrient Gradients. Frontiers in Microbiology, 11, [175]. https://doi.org/10.3389/fmicb.2020.00175 Copyright Other than for strictly personal use, it is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), unless the work is under an open content license (like Creative Commons). The publication may also be distributed here under the terms of Article 25fa of the Dutch Copyright Act, indicated by the “Taverne” license. More information can be found on the University of Groningen website: https://www.rug.nl/library/open-access/self-archiving-pure/taverne- amendment. Take-down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. -
Exploring the Microbiome of the Mediterranean Sponge Aplysina Aerophoba by Single-Cell and Metagenomics
Exploring the microbiome of the Mediterranean sponge Aplysina aerophoba by single-cell and metagenomics Untersuchungen am Mikrobiom des Mittelmeerschwamms Aplysina aerophoba mittels Einzelzell- und Metagenomik Doctoral thesis for a doctoral degree at the Graduate School of Life Sciences Julius-Maximilians-Universität Würzburg Section: Integrative Biology Submitted by Beate Magdalena Slaby from München Würzburg, March 2017 Submitted on: ……………………………………………………… Members of the Promotionskomitee Chairperson: Prof. Dr. Thomas Müller Primary Supervisor: Prof. Dr. Ute Hentschel Humeida Supervisor (Second): Prof. Dr. Thomas Dandekar Supervisor (Third): Prof. Dr. Frédéric Partensky Date of public defense: ……………………………………………………… Date of receipt of certificates: ……………………………………………………… ii Affidavit I hereby confirm that my thesis entitled ‘Exploring the microbiome of the Mediterranean sponge Aplysina aerophoba by single-cell and metagenomics’ is the result of my own work. I did not receive any help or support from commercial consultants. All sources and / or materials applied are listed and specified in the thesis. Furthermore, I confirm that this thesis has not yet been submitted as part of another examination process neither in identical nor in similar form. Place, Date Signature iii Acknowledgements I received financial support for this thesis project by a grant of the German Excellence Initiative to the Graduate School of Life Sciences of the University of Würzburg through a PhD fellowship, and from the SponGES project that has received funding from the European Union’s Horizon 2020 research and innovation program. I would like to thank: Dr. Ute Hentschel Humeida for her support and encouragement, and for providing so many extraordinary opportunities. Dr. Thomas Dandekar and Dr. Frédéric Partensky for the supervision and a number of very helpful discussions. -
Sponge (Porifera)
Sponge (Porifera) species from the Mediterranean coast of Turkey (Levantine Sea, eastern Mediterranean), with a checklist of sponges from the coasts of Turkey Turk J Zool 2012; 36(4) 460-464 © TÜBİTAK Research Article doi:10.3906/zoo-1107-4 Sponge (Porifera) species from the Mediterranean coast of Turkey (Levantine Sea, eastern Mediterranean), with a checklist of sponges from the coasts of Turkey Alper EVCEN*, Melih Ertan ÇINAR Department of Hydrobiology, Faculty of Fisheries, Ege University, 35100 Bornova, İzmir - TURKEY Received: 05.07.2011 Abstract: Th e present study deals with sponge species collected along the Mediterranean coast of Turkey in 2005. A total of 29 species belonging to 19 families were encountered, of which Phorbas plumosus is a new record for the eastern Mediterranean, 8 species are new records for the marine fauna of Turkey (Clathrina clathrus, Spirastrella cunctatrix, Desmacella inornata, Phorbas plumosus, Hymerhabdia intermedia, Haliclona fulva, Petrosia vansoesti, and Ircinia dendroides), and 19 species are new records for the Levantine Sea (C. clathrus, Sycon raphanus, Erylus discophorus, Alectona millari, Cliona celata, Diplastrella bistellata, Mycale contareni, Mycale cf. rotalis, Mycale lingua, D. inornata, P. plumosus, Phorbas fi ctitius, Lissodendoryx isodictyalis, Hymerhabdia intermedia, H. fulva, P. vansoesti, I. dendroides, Sarcotragus spinosulus, and Aplysina aerophoba). Th e morphological and distributional features of the species that are new to the Turkish marine fauna are presented. In addition, a check-list of the sponge species that have been reported from the coasts of Turkey to date is provided. Key words: Sponges, Porifera, biodiversity, distribution, Levantine Sea, Turkey, eastern Mediterranean Türkiye’nin Akdeniz kıyılarından (Levantin Denizi, doğu Akdeniz) sünger (Porifera) türleri ile Türkiye kıyılarından kaydedilen süngerlerin kontrol listesi Özet: Bu çalışma, 2005 yılında Türkiye’nin Akdeniz kıyılarında bulunan bazı sünger türlerini ele almaktadır. -
Marine Rare Actinomycetes: a Promising Source of Structurally Diverse and Unique Novel Natural Products
Review Marine Rare Actinomycetes: A Promising Source of Structurally Diverse and Unique Novel Natural Products Ramesh Subramani 1 and Detmer Sipkema 2,* 1 School of Biological and Chemical Sciences, Faculty of Science, Technology & Environment, The University of the South Pacific, Laucala Campus, Private Mail Bag, Suva, Republic of Fiji; [email protected] 2 Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, 6708 WE Wageningen, The Netherlands * Correspondence: [email protected]; Tel.: +31-317-483113 Received: 7 March 2019; Accepted: 23 April 2019; Published: 26 April 2019 Abstract: Rare actinomycetes are prolific in the marine environment; however, knowledge about their diversity, distribution and biochemistry is limited. Marine rare actinomycetes represent a rather untapped source of chemically diverse secondary metabolites and novel bioactive compounds. In this review, we aim to summarize the present knowledge on the isolation, diversity, distribution and natural product discovery of marine rare actinomycetes reported from mid-2013 to 2017. A total of 97 new species, representing 9 novel genera and belonging to 27 families of marine rare actinomycetes have been reported, with the highest numbers of novel isolates from the families Pseudonocardiaceae, Demequinaceae, Micromonosporaceae and Nocardioidaceae. Additionally, this study reviewed 167 new bioactive compounds produced by 58 different rare actinomycete species representing 24 genera. Most of the compounds produced by the marine rare actinomycetes present antibacterial, antifungal, antiparasitic, anticancer or antimalarial activities. The highest numbers of natural products were derived from the genera Nocardiopsis, Micromonospora, Salinispora and Pseudonocardia. Members of the genus Micromonospora were revealed to be the richest source of chemically diverse and unique bioactive natural products. -
Isolation of Chitin from Aplysina Aerophoba Using a Microwave Approach
ISOLATION OF CHITIN FROM APLYSINA AEROPHOBA USING A MICROWAVE APPROACH Christine Klinger1,2, Sonia Żółtowska-Aksamitowska2,3, Teofil Jesionowski3,* 1 - Institute of Physical Chemistry, TU Bergakademie-Freiberg, 2 - Institute of Electronics and Sensor Materials, TU Bergakademie Freiberg, 3 - Institute of Chemical Technology and Engineering, Faculty of Chemical Technology, Poznan University of Technology, Berdychowo 4, 60965 Poznan, Poland e-mail: [email protected] Abstract Chitin of poriferan origin represents a unique renewable source of three-dimensional (3D) microtubular centimetre-sized scaffolds, which have recently been recognized as having applications in biomedicine, tissue engineering, and extreme biomimetics. The standard method of chitin isolation from sponges requires concentrated solutions of acids and bases and remains a time-consuming process (lasting up to seven days). Here, for the first time, we propose a new microwave-based express method for the isolation of chitinous scaffolds from the marine demosponge Aplysina aerophoba cultivated under marine farming conditions. Our method requires only 41% of the time of the classical process and does not lead to the deacetylation of chitin to chitosan. Alterations in microstructure and chemical composition due to the microwave treatment were investigated using various analytical approaches, including Calcofluor White staining, chitinase digestion, scattering electron microscopy, and Raman and ATR-FTIR spectroscopy. It was demonstrated that microwave irradiation has no impact on the chemical composition of the isolated chitin. Keywords: chitin isolation, marine sponge, microwave treatment, Aplysina aerophoba Received: 03.01.2019 Accepted: 05.04.2019 Progress on Chemistry and Application of Chitin and its Derivatives, Volume XXIV, 2019 DOI: 10.15259/PCACD.24.005 61 Ch. -
Mediterranean Marine Science
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by National Documentation Centre - EKT journals Mediterranean Marine Science Vol. 20, 2019 Individualistic patterns in the budding morphology of the Mediterranean demosponge Aplysina aerophoba DÍAZ JULIO Universidad de las Islas Baleares MOVILLA JUANCHO Instituto Español de Oceanografía FERRIOL PERE Universidad de las Islas Baleares https://doi.org/10.12681/mms.19322 Copyright © 2019 Mediterranean Marine Science To cite this article: DÍAZ, J., MOVILLA, J., & FERRIOL, P. (2019). Individualistic patterns in the budding morphology of the Mediterranean demosponge Aplysina aerophoba. Mediterranean Marine Science, 20(2), 282-286. doi:https://doi.org/10.12681/mms.19322 http://epublishing.ekt.gr | e-Publisher: EKT | Downloaded at 21/02/2020 05:21:36 | Short Communication Mediterranean Marine Science Indexed in WoS (Web of Science, ISI Thomson) and SCOPUS The journal is available on line at http://www.medit-mar-sc.net DOI: http://dx.doi.org/10.12681/mms.19332 Individualistic patterns in the budding morphology of the Mediterranean demosponge Aplysina aerophoba Julio A. DÍAZ1, 2, Juancho MOVILLA3 and Pere FERRIOL1 1 Interdisciplinary Ecology Group, Biology Department, Universidad de las Islas Baleares, Palma, Spain 2 Instituto Español de Oceanografía, Centre Oceanogràfic de Balears, Palma de Mallorca, Spain 3 Instituto Español de Oceanografía, Centre Oceanogràfic de Balears, Estació d’Investigació Jaume Ferrer, Menorca, Spain Corresponding author: [email protected] Handling Editor: Eleni VOULTSIADOU Received: 10 December 2018; Accepted: 18 April 2019; Published on line: 28 May 2019 Abstract The external morphology of sponges is characterized by high plasticity, generally considered to be shaped by environmental factors, and modulated through complex morphogenetic pathways. -
OEB51: the Biology and Evolu on of Invertebrate Animals
OEB51: The Biology and Evoluon of Invertebrate Animals Lectures: BioLabs 2062 Labs: BioLabs 5088 Instructor: Cassandra Extavour BioLabs 4103 (un:l Feb. 11) BioLabs2087 (aer Feb. 11) 617 496 1935 [email protected] Teaching Assistant: Tauana Cunha MCZ Labs 5th Floor [email protected] Basic Info about OEB 51 • Lecture Structure: • Tuesdays 1-2:30 Pm: • ≈ 1 hour lecture • ≈ 30 minutes “Tech Talk” • the lecturer will explain some of the key techniques used in the primary literature paper we will be discussing that week • Wednesdays: • By the end of lab (6pm), submit at least one quesBon(s) for discussion of the primary literature paper for that week • Thursdays 1-2:30 Pm: • ≈ 1 hour lecture • ≈ 30 minutes Paper discussion • Either the lecturer or teams of 2 students will lead the class in a discussion of the primary literature paper for that week • There Will be a total of 7 Paper discussions led by students • On Thursday January 28, We Will have the list of Papers to be discussed, and teams can sign uP to Present Basic Info about OEB 51 • Bocas del Toro, Panama Field Trip: • Saturday March 12 to Sunday March 20, 2016: • This field triP takes Place during sPring break! • It is mandatory to aend the field triP but… • …OEB51 Will not meet during the Week folloWing the field triP • Saturday March 12: • fly to Panama City, stay there overnight • Sunday March 13: • fly to Bocas del Toro, head out for our first collec:on! • Monday March 14 – Saturday March 19: • breakfast, field collec:ng (lunch on the boat), animal care at sea tables, -
Express Method for Isolation of Ready-To
Express Method for Isolation of Ready-to-Use 3D Chitin Scaffolds from Aplysina archeri (Aplysineidae: Verongiida) Demosponge Christine Klinger, Sonia Żóltowska-Aksamitowska, Marcin Wysokowski, Mikhail Tsurkan, Roberta Galli, Iaroslav Petrenko, Tomasz Machalowski, Alexander Ereskovsky, Rajko Martinović, Lyubov Muzychka, et al. To cite this version: Christine Klinger, Sonia Żóltowska-Aksamitowska, Marcin Wysokowski, Mikhail Tsurkan, Roberta Galli, et al.. Express Method for Isolation of Ready-to-Use 3D Chitin Scaffolds from Aplysina archeri (Aplysineidae: Verongiida) Demosponge. Marine drugs, MDPI, 2019, 17 (2), pp.E131. 10.3390/md17020131. hal-02047527 HAL Id: hal-02047527 https://hal.archives-ouvertes.fr/hal-02047527 Submitted on 26 Mar 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. marine drugs Article Express Method for Isolation of Ready-to-Use 3D Chitin Scaffolds from Aplysina archeri (Aplysineidae: Verongiida) Demosponge Christine Klinger 1, Sonia Z˙ ółtowska-Aksamitowska 2,3, Marcin Wysokowski 2,3,*, Mikhail V. Tsurkan 4 , Roberta Galli 5 , Iaroslav Petrenko 3, Tomasz Machałowski 2, Alexander Ereskovsky 6,7 , Rajko Martinovi´c 8, Lyubov Muzychka 9, Oleg B. Smolii 9, Nicole Bechmann 10 , Viatcheslav Ivanenko 11,12 , Peter J. Schupp 13 , Teofil Jesionowski 2 , Marco Giovine 14, Yvonne Joseph 3 , Stefan R. -
Brominated Skeletal Components of the Marine Demosponges, Aplysina Cavernicola and Ianthella Basta: Analytical and Biochemical Investigations
Mar. Drugs 2013, 11, 1271-1287; doi:10.3390/md11041271 OPEN ACCESS Marine Drugs ISSN 1660-3397 www.mdpi.com/journal/marinedrugs Article Brominated Skeletal Components of the Marine Demosponges, Aplysina cavernicola and Ianthella basta: Analytical and Biochemical Investigations Kurt Kunze 1, Hendrik Niemann 2, Susanne Ueberlein 3, Renate Schulze 3, Hermann Ehrlich 4, Eike Brunner 3,*, Peter Proksch 2 and Karl-Heinz van Pée 1 1 General Biochemistry, TU Dresden, Dresden 01062, Germany; E-Mails: [email protected] (K.K.); [email protected] (K.-H.P.) 2 Institute of Pharmaceutical Biology and Biotechnology, Heinrich Heine University Duesseldorf, Universitaetsstrasse 1, Geb. 26.23, Duesseldorf 40225, Germany; E-Mails: [email protected] (H.N.); [email protected] (P.P.) 3 Bioanalytical Chemistry, TU Dresden, Dresden 01062, Germany; E-Mails: [email protected] (S.U.); [email protected] (R.S.) 4 Institute of Experimental Physics, TU Bergakademie Freiberg, Freiberg 09596, Germany; E-Mail: [email protected] * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +49-351-4633-7152; Fax: +49-351-4633-7188. Received: 16 February 2013; in revised form: 18 March 2013 / Accepted: 26 March 2013 / Published: 17 April 2013 Abstract: Demosponges possess a skeleton made of a composite material with various organic constituents and/or siliceous spicules. Chitin is an integral part of the skeleton of different sponges of the order Verongida. Moreover, sponges of the order Verongida, such as Aplysina cavernicola or Ianthella basta, are well-known for the biosynthesis of brominated tyrosine derivates, characteristic bioactive natural products. -
Copyright© 2019 Mediterranean Marine Science
Mediterranean Marine Science Vol. 20, 2019 Individualistic patterns in the budding morphology of the Mediterranean demosponge Aplysina aerophoba DÍAZ JULIO Universidad de las Islas Baleares MOVILLA JUANCHO Instituto Español de Oceanografía FERRIOL PERE Universidad de las Islas Baleares http://dx.doi.org/10.12681/mms.19322 Copyright © 2019 Mediterranean Marine Science To cite this article: DÍAZ, J., MOVILLA, J., & FERRIOL, P. (2019). Individualistic patterns in the budding morphology of the Mediterranean demosponge Aplysina aerophoba. Mediterranean Marine Science, 20(2), 282-286. doi:http://dx.doi.org/10.12681/mms.19322 http://epublishing.ekt.gr | e-Publisher: EKT | Downloaded at 26/10/2019 18:25:20 | Short Communication Mediterranean Marine Science Indexed in WoS (Web of Science, ISI Thomson) and SCOPUS The journal is available on line at http://www.medit-mar-sc.net DOI: http://dx.doi.org/10.12681/mms.19332 Individualistic patterns in the budding morphology of the Mediterranean demosponge Aplysina aerophoba Julio A. DÍAZ1, 2, Juancho MOVILLA3 and Pere FERRIOL1 1 Interdisciplinary Ecology Group, Biology Department, Universidad de las Islas Baleares, Palma, Spain 2 Instituto Español de Oceanografía, Centre Oceanogràfic de Balears, Palma de Mallorca, Spain 3 Instituto Español de Oceanografía, Centre Oceanogràfic de Balears, Estació d’Investigació Jaume Ferrer, Menorca, Spain Corresponding author: [email protected] Handling Editor: Eleni VOULTSIADOU Received: 10 December 2018; Accepted: 18 April 2019; Published on line: 28 May 2019 Abstract The external morphology of sponges is characterized by high plasticity, generally considered to be shaped by environmental factors, and modulated through complex morphogenetic pathways. This work shows for the first time that explants of the At- lanto-Mediterranean demosponge Aplysina aerophoba reared in aquaria under different pH and temperature conditions produce reproductive buds with a phenotype determined by the donor individual. -
New Genus-Specific Primers for PCR Identification of Rubrobacter Strains
Antonie van Leeuwenhoek (2019) 112:1863–1874 https://doi.org/10.1007/s10482-019-01314-3 (0123456789().,-volV)( 0123456789().,-volV) ORIGINAL PAPER New genus-specific primers for PCR identification of Rubrobacter strains Jean Franco Castro . Imen Nouioui . Juan A. Asenjo . Barbara Andrews . Alan T. Bull . Michael Goodfellow Received: 15 March 2019 / Accepted: 1 August 2019 / Published online: 12 August 2019 Ó The Author(s) 2019 Abstract A set of oligonucleotide primers, environmental DNA extracted from soil samples Rubro223f and Rubro454r, were found to amplify a taken from two locations in the Atacama Desert. 267 nucleotide sequence of 16S rRNA genes of Sequencing of a DNA library prepared from the bands Rubrobacter type strains. The primers distinguished showed that all of the clones fell within the evolu- members of this genus from other deeply-rooted tionary radiation occupied by the genus Rubrobacter. actinobacterial lineages corresponding to the genera Most of the clones were assigned to two lineages that Conexibacter, Gaiella, Parviterribacter, Patulibacter, were well separated from phyletic lines composed of Solirubrobacter and Thermoleophilum of the class Rubrobacter type strains. It can be concluded that Thermoleophilia. Amplification of DNA bands of primers Rubro223f and Rubro454r are specific for the about 267 nucleotides were generated from genus Rubrobacter and can be used to detect the presence and abundance of members of this genus in the Atacama Desert and other biomes. GenBank accession numbers: MK158160–75 for sequences from Salar de Tara and MK158176–92 for those from Quebrada Nacimiento. Keywords Actinobacteria Á Rubrobacter Á Atacama desert Á Taxonomy Á Genus-specific primers Electronic supplementary material The online version of this article (https://doi.org/10.1007/s10482-019-01314-3) con- tains supplementary material, which is available to authorized users.