Hypochondroplasia and Acanthosis Nigricans
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The National Economic Burden of Rare Disease Study February 2021
Acknowledgements This study was sponsored by the EveryLife Foundation for Rare Diseases and made possible through the collaborative efforts of the national rare disease community and key stakeholders. The EveryLife Foundation thanks all those who shared their expertise and insights to provide invaluable input to the study including: the Lewin Group, the EveryLife Community Congress membership, the Technical Advisory Group for this study, leadership from the National Center for Advancing Translational Sciences (NCATS) at the National Institutes of Health (NIH), the Undiagnosed Diseases Network (UDN), the Little Hercules Foundation, the Rare Disease Legislative Advocates (RDLA) Advisory Committee, SmithSolve, and our study funders. Most especially, we thank the members of our rare disease patient and caregiver community who participated in this effort and have helped to transform their lived experience into quantifiable data. LEWIN GROUP PROJECT STAFF Grace Yang, MPA, MA, Vice President Inna Cintina, PhD, Senior Consultant Matt Zhou, BS, Research Consultant Daniel Emont, MPH, Research Consultant Janice Lin, BS, Consultant Samuel Kallman, BA, BS, Research Consultant EVERYLIFE FOUNDATION PROJECT STAFF Annie Kennedy, BS, Chief of Policy and Advocacy Julia Jenkins, BA, Executive Director Jamie Sullivan, MPH, Director of Policy TECHNICAL ADVISORY GROUP Annie Kennedy, BS, Chief of Policy & Advocacy, EveryLife Foundation for Rare Diseases Anne Pariser, MD, Director, Office of Rare Diseases Research, National Center for Advancing Translational Sciences (NCATS), National Institutes of Health Elisabeth M. Oehrlein, PhD, MS, Senior Director, Research and Programs, National Health Council Christina Hartman, Senior Director of Advocacy, The Assistance Fund Kathleen Stratton, National Academies of Science, Engineering and Medicine (NASEM) Steve Silvestri, Director, Government Affairs, Neurocrine Biosciences Inc. -
Supporting Information
Supporting Information Torkamani et al. 10.1073/pnas.0802403105 Materials and Methods kinase sequences used to generate conserved motifs, as in Kannan Kinase Identifiers. Kinase protein and DNA reference sequences et al. (3), the Gibbs motif sampling method identifies characteristic were obtained from Kinbase. These reference sequences were motifs for each individual subdomain of the kinase catalytic core, used as the basis to assign various gene identifiers (including which are then used to generate high confidence motif-based Ensembl gene IDs, HGNC gene symbols, and Entrez gene IDs) Markov chain Monte Carlo multiple alignments based upon these to every known human protein kinase. Ultimately, only eukary- motifs (4). These subdomains compromise the core structural otic protein kinases, that is, all human protein kinases except components of the protein kinase catalytic core. Intervening re- those belonging to the atypical protein kinase family, were gions between these subdomains were not aligned. considered in this study. The various gene identifiers were assigned as follows: Ensembl Mapping to Multiple Alignments and Generation of Logo Figures. A Gene ID’s were determined for each protein kinase by BLAST- nonredundant set of SNPs was generated to be mapped to the ing the reference Kinbase protein sequence against the Ensembl alignment computationally. That is, if multiple disease or com- database (www.ensembl.org/Homo sapiens/blastview). The En- mon SNPs have been observed at a particular position within a sembl Gene ID of the top hit was assigned to the protein kinase. particular protein kinase, it is only considered once in our The Ensembl Gene ID was then used as a query in Biomart analysis. -
Repercussions of Inborn Errors of Immunity on Growth☆ Jornal De Pediatria, Vol
Jornal de Pediatria ISSN: 0021-7557 ISSN: 1678-4782 Sociedade Brasileira de Pediatria Goudouris, Ekaterini Simões; Segundo, Gesmar Rodrigues Silva; Poli, Cecilia Repercussions of inborn errors of immunity on growth☆ Jornal de Pediatria, vol. 95, no. 1, Suppl., 2019, pp. S49-S58 Sociedade Brasileira de Pediatria DOI: https://doi.org/10.1016/j.jped.2018.11.006 Available in: https://www.redalyc.org/articulo.oa?id=399759353007 How to cite Complete issue Scientific Information System Redalyc More information about this article Network of Scientific Journals from Latin America and the Caribbean, Spain and Journal's webpage in redalyc.org Portugal Project academic non-profit, developed under the open access initiative J Pediatr (Rio J). 2019;95(S1):S49---S58 www.jped.com.br REVIEW ARTICLE ଝ Repercussions of inborn errors of immunity on growth a,b,∗ c,d e Ekaterini Simões Goudouris , Gesmar Rodrigues Silva Segundo , Cecilia Poli a Universidade Federal do Rio de Janeiro (UFRJ), Faculdade de Medicina, Departamento de Pediatria, Rio de Janeiro, RJ, Brazil b Universidade Federal do Rio de Janeiro (UFRJ), Instituto de Puericultura e Pediatria Martagão Gesteira (IPPMG), Curso de Especializac¸ão em Alergia e Imunologia Clínica, Rio de Janeiro, RJ, Brazil c Universidade Federal de Uberlândia (UFU), Faculdade de Medicina, Departamento de Pediatria, Uberlândia, MG, Brazil d Universidade Federal de Uberlândia (UFU), Hospital das Clínicas, Programa de Residência Médica em Alergia e Imunologia Pediátrica, Uberlândia, MG, Brazil e Universidad del Desarrollo, -
Hypochondroplasia
Arch Dis Child: first published as 10.1136/adc.53.11.868 on 1 November 1978. Downloaded from Arch Dis Child: first published as 10.1136/adc.53.11.868 on 1 November 1978. Downloaded from Archives of Disease in Childhood, 1978, 53, 868-872 Hypochondroplasia J. F. T. GLASGOW, N. C. NEVIN, AND P. S. THOMAS From the Departments of Child Health and Medical Genetics, Queen's University ofBelfast, and Department of Radiology, Royal Belfast Hospitalfor Sick Children SUMMARY Clinical, radiological, and genetic features are described in 3 patients with hypo- chondroplasia. Early recognition of this disorder is possible from the abnormal body proportions with short limbs and lumbar lordosis without facial stigmata of achondroplasia. Radiological confirmation is possible provided a full skeletal survey is made. Two of our patients had a large head. Hypochondroplasia is one of the milder varieties of Table 1 Anthropometric data in patients with chondrodystrophy, resembling a mild form of hypochondroplasia achondroplasia. Affected individuals are slightly Anthropometric data Case I Case 2 Case 3 short in stature with short arms and legs (Kozlowski, 1965, 1973; Beals, 1969; Dorst, 1969; Hall, 1969; At 3 At 7 Murdock, 1969; Walker et al., 1971). Although Age at measurement (years) 8-75 3.0 7.5 9-0 hypochondroplasia appears to be fairly common Height (cm) 107.7 (3) 92.7 (50) 113.7 (10) 119.0 (3) (Rimoin, 1975) there have been few cases described. Weight (kg) 21.6 (10) 16.4 (90) 20.0 (10) 35.6 (90) Skull circumference copyright. We describe the clinical, radiological, and genetic (cm) 53-7 52-5 56-0 50.5 features in 3 patients. -
SKELETAL DYSPLASIA Dr Vasu Pai
SKELETAL DYSPLASIA Dr Vasu Pai Skeletal dysplasia are the result of a defective growth and development of the skeleton. Dysplastic conditions are suspected on the basis of abnormal stature, disproportion, dysmorphism, or deformity. Diagnosis requires Simple measurement of height and calculation of proportionality [<60 inches: consideration of dysplasia is appropriate] Dysmorphic features of the face, hands, feet or deformity A complete physical examination Radiographs: Extremities and spine, skull, Pelvis, Hand Genetics: the risk of the recurrence of the condition in the family; Family evaluation. Dwarf: Proportional: constitutional or endocrine or malnutrition Disproportion [Trunk: Extremity] a. Height < 42” Diastrophic Dwarfism < 48” Achondroplasia 52” Hypochondroplasia b. Trunk-extremity ratio May have a normal trunk and short limbs (achondroplasia), Short trunk and limbs of normal length (e.g., spondylo-epiphyseal dysplasia tarda) Long trunk and long limbs (e.g., Marfan’s syndrome). c. Limb-segment ratio Normal: Radius-Humerus ratio 75% Tibia-Femur 82% Rhizomelia [short proximal segments as in Achondroplastics] Mesomelia: Dynschondrosteosis] Acromelia [short hands and feet] RUBIN CLASSIFICATION 1. Hypoplastic epiphysis ACHONDROPLASTIC Autosomal Dominant: 80%; 0.5-1.5/10000 births Most common disproportionate dwarfism. Prenatal diagnosis: 18 weeks by measuring femoral and humeral lengths. Abnormal endochondral bone formation: zone of hypertrophy. Gene defect FGFR fibroblast growth factor receptor 3 . chromosome 4 Rhizomelic pattern, with the humerus and femur affected more than the distal extremities; Facies: Frontal bossing; Macrocephaly; Saddle nose Maxillary hypoplasia, Mandibular prognathism Spine: Lumbar lordosis and Thoracolumbar kyphosis Progressive genu varum and coxa valga Wedge shaped gaps between 3rd and 4th fingers (trident hands) Trident hand 50%, joint laxity Pathology Lack of columnation Bony plate from lack of growth Disorganized metaphysis Orthopaedics 1. -
The First Non-Invasive Prenatal Test That Screens for Single-Gene Disorders
The first non-invasive prenatal test that screens for single-gene disorders the evolution of NIPT A non-invasive prenatal test that screens multiple genes for mutations causing severe genetic disorders in the fetus analyses circulating cell- free fetal DNA (cfDNA) from a maternal blood sample. The test is performed after 10 weeks of pregnancy. works as a complementary screen to traditional and genome- wide NIPT . It screens for several life-altering genetic disorders that are not screened with current NIPT technology, allowing a complete picture of the risk of a pregnancy being affected by a genetic disorder. 2 facilitates early diagnosis of single-gene disorders. It involves 3 different levels of screening: This test screens for 5 common inherited recessive genetic disorders, such as Cystic Fibrosis, Beta-Thalassemia, Sickle INHERITED cell anaemia, Deafness autosomal recessive type 1A, Deafness autosomal recessive type 1B. Genes screened: CFTR, CX26 (GJB2), CX30 (GJB6), HBB This test screens for 44 severe genetic disorders due to de novo mutations (a gene mutation that is not inherited) in 25 genes DE NOVO Genes screened: ASXL1, BRAF, CBL, CHD7, COL1A1, COL1A2 , COL2A1, FGFR2, FGFR3, HDAC8, JAG1, KRAS, MAP2K1, MAP2K2, MECP2, NIPBL, NRAS, NSD1, PTPN11, RAF1, RIT1, SETBP1, SHOC2, SIX3, SOS1 This test screens for both inherited and de novo single-gene disorders and represents a combination of the tests INHERITED COMPLETE and DE NOVO providing a complete picture of the pregnancy risk. 3 allows detection of common inherited genetic disorders in INHERITED the fetus GENE GENETIC DISORDER CFTR Cystic Fibrosis CX26 (GJB2) Deafness autosomal recessive type 1A CX30 (GJB6) Deafness autosomal recessive type 1B HBB Beta-Thalassemia HBB Sickle cell anemia The inherited recessive disorders screened by INHERITED are the most common in the European population 4 identifies fetal conditions that could be missed by traditional DE NOVO prenatal screening. -
Infant with Thanatophoric Dysplasia: a Clue to the Locus of the Candidate Gene 295
JMed Genet 1995;32:293-295 293 De novo 1;1O balanced translocation in an infant with thanatophoric dysplasia: a clue to the locus of the candidate gene J Med Genet: first published as 10.1136/jmg.32.4.293 on 1 April 1995. Downloaded from J H Hersh, FF Yen, S C Peiper, M J Barch, 0 A Yacoub, D H Voss, J L Roberts Abstract Histopathologically, the growth plate in TD is A female infant with thanatophoric dys- interrupted by tufts of ossifying tissue, ex- plasia was found to have a de novo trans- hibiting features of both endochondral and location involving chromosomes 1 and 10. membranous ossification.5 The chromosome abnormality may rep- TD is thought to be transmitted in an auto- resent an important clue in identifying the somal dominant fashion.5 Since most cases of locus for the candidate gene responsible TD are sporadic, its occurrence in an infant is for this lethal skeletal dysplasia. presumed to be the result of a new autosomal dominant mutation.6 We report the first case (JMed Genet 1995;32:293-295) of TD in which an apparent de novo balanced reciprocal translocation was present in the affected infant. Thanatophoric dysplasia (TD) is the most com- mon lethal skeletal dysplasia with a livebirth prevalence estimated to be between 0-28 and Case report 0 6/10000.2 Clinically affected infants have A white female, who was the second of twins, marked limb shortening and a small thorax, was born at 36 weeks' gestation to a 29 year and death usually occurs in the neonatal period old G2P1 woman and her 36 year old husband. -
Blueprint Genetics Craniosynostosis Panel
Craniosynostosis Panel Test code: MA2901 Is a 38 gene panel that includes assessment of non-coding variants. Is ideal for patients with craniosynostosis. About Craniosynostosis Craniosynostosis is defined as the premature fusion of one or more cranial sutures leading to secondary distortion of skull shape. It may result from a primary defect of ossification (primary craniosynostosis) or, more commonly, from a failure of brain growth (secondary craniosynostosis). Premature closure of the sutures (fibrous joints) causes the pressure inside of the head to increase and the skull or facial bones to change from a normal, symmetrical appearance resulting in skull deformities with a variable presentation. Craniosynostosis may occur in an isolated setting or as part of a syndrome with a variety of inheritance patterns and reccurrence risks. Craniosynostosis occurs in 1/2,200 live births. Availability 4 weeks Gene Set Description Genes in the Craniosynostosis Panel and their clinical significance Gene Associated phenotypes Inheritance ClinVar HGMD ALPL Odontohypophosphatasia, Hypophosphatasia perinatal lethal, AD/AR 78 291 infantile, juvenile and adult forms ALX3 Frontonasal dysplasia type 1 AR 8 8 ALX4 Frontonasal dysplasia type 2, Parietal foramina AD/AR 15 24 BMP4 Microphthalmia, syndromic, Orofacial cleft AD 8 39 CDC45 Meier-Gorlin syndrome 7 AR 10 19 EDNRB Hirschsprung disease, ABCD syndrome, Waardenburg syndrome AD/AR 12 66 EFNB1 Craniofrontonasal dysplasia XL 28 116 ERF Craniosynostosis 4 AD 17 16 ESCO2 SC phocomelia syndrome, Roberts syndrome -
MECHANISMS in ENDOCRINOLOGY: Novel Genetic Causes of Short Stature
J M Wit and others Genetics of short stature 174:4 R145–R173 Review MECHANISMS IN ENDOCRINOLOGY Novel genetic causes of short stature 1 1 2 2 Jan M Wit , Wilma Oostdijk , Monique Losekoot , Hermine A van Duyvenvoorde , Correspondence Claudia A L Ruivenkamp2 and Sarina G Kant2 should be addressed to J M Wit Departments of 1Paediatrics and 2Clinical Genetics, Leiden University Medical Center, PO Box 9600, 2300 RC Leiden, Email The Netherlands [email protected] Abstract The fast technological development, particularly single nucleotide polymorphism array, array-comparative genomic hybridization, and whole exome sequencing, has led to the discovery of many novel genetic causes of growth failure. In this review we discuss a selection of these, according to a diagnostic classification centred on the epiphyseal growth plate. We successively discuss disorders in hormone signalling, paracrine factors, matrix molecules, intracellular pathways, and fundamental cellular processes, followed by chromosomal aberrations including copy number variants (CNVs) and imprinting disorders associated with short stature. Many novel causes of GH deficiency (GHD) as part of combined pituitary hormone deficiency have been uncovered. The most frequent genetic causes of isolated GHD are GH1 and GHRHR defects, but several novel causes have recently been found, such as GHSR, RNPC3, and IFT172 mutations. Besides well-defined causes of GH insensitivity (GHR, STAT5B, IGFALS, IGF1 defects), disorders of NFkB signalling, STAT3 and IGF2 have recently been discovered. Heterozygous IGF1R defects are a relatively frequent cause of prenatal and postnatal growth retardation. TRHA mutations cause a syndromic form of short stature with elevated T3/T4 ratio. Disorders of signalling of various paracrine factors (FGFs, BMPs, WNTs, PTHrP/IHH, and CNP/NPR2) or genetic defects affecting cartilage extracellular matrix usually cause disproportionate short stature. -
Original Articles Evidence for Digenic Inheritance in Some Cases of Antley
26 J Med Genet 2000;37:26–32 Original articles J Med Genet: first published as 10.1136/jmg.37.1.26 on 1 January 2000. Downloaded from Department of Clinical Genetics, Institute of Child Health, 30 Guilford Street, London WC1N 1EH, UK Evidence for digenic inheritance in some cases of W Reardon M Baraitser Antley-Bixler syndrome? R M Winter Molecular Genetics Unit, Institute of Child Health, London, UK William Reardon, Anne Smith, John W Honour, Peter Hindmarsh, Debipriya Das, A Smith Gill Rumsby, Isabelle Nelson, Sue Malcolm, Lesley Adès, David Sillence, I Nelson Dhavendra Kumar, Celia DeLozier-Blanchet, Shane McKee, Thaddeus Kelly, S Malcolm Wallace L McKeehan, Michael Baraitser, Robin M Winter Department of Chemical Pathology, University College London Hospitals, London, UK J W Honour Abstract The Antley-Bixler syndrome represents the D Das The Antley-Bixler syndrome has been severe end of the spectrum of syndromic G Rumsby thought to be caused by an autosomal craniosynostosis. Many such patients have London Centre for recessive gene. However, patients with this choanal atresia and severe respiratory distress, Paediatric often resulting in early death. In contrast with Endocrinology, phenotype have been reported with a new University College dominant mutation at the FGFR2 locus as most clinically similar forms of syndromic Hospital, London, UK well as in the oVspring of mothers taking craniosynostosis, which are transmitted in an P Hindmarsh the antifungal agent fluconazole during autosomal dominant manner, Antley-Bixler Departments of early pregnancy. In addition to the cranio- syndrome has been thought to be an autosomal Clinical Genetics and recessive disorder.7 This is based upon three Paediatrics and Child synostosis and joint ankylosis which are the 8–10 Health, New Children’s clinical hallmarks of the condition, many reports of aVected sibs and the birth of Hospital, Parramatta, patients, especially females, have genital aVected subjects to consanguineous par- NSW 2124, Australia ents.91112It should be noted that joint ankylo- abnormalities. -
Craniosynostosis Precision Panel Overview Indications Clinical Utility
Craniosynostosis Precision Panel Overview Craniosynostosis is defined as the premature fusion of one or more cranial sutures, often resulting in abnormal head shape. It is a developmental craniofacial anomaly resulting from a primary defect of ossification (primary craniosynostosis) or, more commonly, from a failure of brain growth (secondary craniosynostosis). As well, craniosynostosis can be simple when only one suture fuses prematurely or complex/compound when there is a premature fusion of multiple sutures. Complex craniosynostosis are usually associated with other body deformities. The main morbidity risk is the elevated intracranial pressure and subsequent brain damage. When left untreated, craniosynostosis can cause serious complications such as developmental delay, facial abnormality, sensory, respiratory and neurological dysfunction, eye anomalies and psychosocial disturbances. In approximately 85% of the cases, this disease is isolated and nonsyndromic. Syndromic craniosynostosis usually present with multiorgan complications. The Igenomix Craniosynostosis Precision Panel can be used to make a directed and accurate diagnosis ultimately leading to a better management and prognosis of the disease. It provides a comprehensive analysis of the genes involved in this disease using next-generation sequencing (NGS) to fully understand the spectrum of relevant genes involved. Indications The Igenomix Craniosynostosis Precision Panel is indicated for those patients with a clinical diagnosis or suspicion with or without the following manifestations: ‐ Microcephaly ‐ Scaphocephaly (elongated head) ‐ Anterior plagiocephaly ‐ Brachycephaly ‐ Torticollis ‐ Frontal bossing Clinical Utility The clinical utility of this panel is: - The genetic and molecular confirmation for an accurate clinical diagnosis of a symptomatic patient. - Early initiation of treatment in the form surgical procedures to relieve fused sutures, midface advancement, limited phase of orthodontic treatment and combined 1 orthodontics/orthognathic surgery treatment. -
Thanatophoric Dysplasia-Type 1 and 2
THANATOPHORIC DYSPLASIA (TYPE I & II) Thanatophoric dysplasia (TD) is one of the most common lethal skeletal For More Information dysplasias. TD is characterized by extremely short ribs, narrow thorax, tubular bones, hypotonia, brachydactyly, distinctive facial features, macrocephaly, a Online Mendelian Inheritance in small chest which crowds the respiratory system, and compression of the brain Man http://www.ncbi.nlm.nih. gov/omim/ Item # 187600 due to deformations of the skull. Two types of TD exist: Type I based on the ab- sence of cloverleaf skull and a curved femur, and Type II based on the presence GeneReviews online clinical of a cloverleaf skull and a straight femur. information resource http://www. ncbi.nlm.nih.gov/bookshelf/br.fc gi?book=gene&part=td#td GENETICS To locate a genetics centre near Thanatophoric dysplasia is an autosomal dominant condition caused by mutations in you, please visit the Canadian the fibroblast growth factor receptor 3 gene (FGFR3), located on chromosome 4 Association of Genetic (4p16.3). TD is present when an individual has one copy of the defective FGFR3 Counsellors website at gene. Majority of probands have a de novo mutation in FGFR3. Risk of recurrence www.cagc-accg.ca or the for parents who have one affected child is not significantly increased over the National Society of Genetic general population. A slightly increased risk of germline mosaicism is theoretically Counsellors website at www.nsgc.org possible, however this has not previously been reported in the literature. Twelve different mutations in the FGFR3 gene which cause TD Type I have been identified, and are listed in the chart below.