Dissertation FINAL Post-Revisions
ALL–CARBON ENE–TYPE CYCLIZATIONS FROM CYCLOHEXADIENE-
TRICARBONYLIRON DERIVATIVES
by
KEITH B. BEACH
Submitted in partial fulfillment of the requirements for the degree of
DOCTOR OF PHILOSOPHY
Thesis Advisor
ANTHONY J. PEARSON, PH.D.
Department of Chemistry
CASE WESTERN RESERVE UNIVERSITY
August 2016 CASE WESTERN RESERVE UNIVERSITY
SCHOOL OF GRADUATE STUDIES
We hereby approve the thesis/dissertation of
Keith B. Beach
candidate for the degree of Doctor of Philosophy.
Committee Chair
Robert G. Salomon, Ph.D.
Committee Members
Gregory P. Tochtrop, Ph.D.
Rajesh Viswanathan, Ph.D.
Yanming Wang, Ph.D.
Date of Defense
02 May 2016
*We also certify that written approval has been obtained for any proprietary material
contained therein. For my Grandfather, my Father and Clara Cree TABLE OF CONTENTS
Table of Contents iv List of Equations vii List of Schemes viii List of Figures ix List of Tables xi Acknowledgements xii List of Abbreviations xiv Abstract xv
Chapter 1. General Introduction: Diene–Tricarbonyliron Complexes 1 1.1 General Properties and Applications 2 1.1.1 Scope of Diene-Tricarbonyliron Complexes 3 1.1.1.1 Iron Carbonyl Reagents Used for Complexation 3 1.1.1.2 Preparation of Diene-Tricarbonyliron Complexes 5 1.1.1.3 Liberation of Diene Ligands from Iron Complexes 10 1.1.2 General Applications of Diene-Tricarbonyliron Complexes 12
1.1.2.1 Fe(CO)3 Moiety used as a Protecting Group 12
1.1.2.2 Fe(CO)3 Moiety used as a Stabilizing Group 15
1.1.2.3 Fe(CO)3 Moiety used as a Stereodirecting Group 17 1.2 Application Towards Stereogenic Quaternary-Carbon Formation 19
1.2.1 From Dienyl-Fe(CO)3 Substrates 20 1.2.1.1 Preparation 20 1.2.1.2 General Reactivity/Selectivity towards Nucleophilic Additions 21 1.2.1.3 Application: Synthesis of Trichodermol and Derivatives 23
1.2.1.4 Limitations of using Dienyl-Fe(CO)3 Complexes in Trichodermol 24 Analogue Synthesis
1.2.2 [6+2] Ene-Type Cyclizations 25
1.2.2.1 Progression towards Cyclizations from Diene-Fe(CO)3 Substrates 25 1.2.2.2 Scope of Ene-Type Cyclizations 28 1.2.2.2.1 Amide Derivatives 28 1.2.2.2.2 Ester and Thioester Derivatives 33
1.2.2.2.3 Stereoelectronic Considerations 35
– iv – 1.2.2.3 Transition to All-Carbon Cyclizations 37
1.3 References 40 Chapter 2. All-Carbon [6+2] Ene-Type Cyclizations of (Cyclohexadiene)-Tricarbonyl 47 Iron Derivatives 2.1 Background: All-Carbon Spirocyclizations 48 2.1.1 Acyclic Substrates 48 2.1.2 Cyclic Substrates 50
2.2 Project Aim: Cyclizations from α-Alcohol Derivatives 51 2.3 Single Cyclizations 54
2.3.1 Unsubstituted (Cyclohexa-1,3-diene)-Fe(CO)3 Substrates 54
2.3.2 3-Methoxy Substituted (Cyclohexa-1,3-diene)-Fe(CO)3 Substrates 60
2.4 Attempts at Tandem Double Cyclizations from Alcohol Derivatives 65 2.4.1 Mono-Cyclization Attempts with Di-Substituted Pendant Olefin 65 2.4.2 Tandem Double Cyclization Attempts 69
2.5 Conclusions 71 2.6 Experimental Section 72 2.7 References 89 Chapter 3. Generality of Stereocontrol During Grignard Additions to 92 (Cyclohexa-1,3-dienylcarbaldehyde)-Tricarbonyl Iron
3.1 Introduction: Alkyl Additions to Carbonyl-Functionalized Diene-Fe(CO)3 Derivatives 93 3.1.1 Explanation of Stereochemical-Descriptor Terminology 93 3.1.2 Alkyl Additions to Acyclic Complexes 94
3.1.2.1 Experimental Observations of Alkylations of Complexed 94 Dienylcarbaldehydes & Dienones
3.1.2.2 Accepted Model for Alkyl Additions to Dienylcarbaldehyde-Fe(CO)3 97 Complexes 3.1.3 Additions to Cyclic Derivatives 98
3.2 Grignard Additions to Cyclohexa-1,3-dienylcarbaldehyde Complexes 99 3.2.1 Observed Selectivities en route to Spirocyclic Complexes 99
3.2.1.1 Additions to Dienylcarbaldehyde-Fe(CO)3 Derivatives 100 3.2.1.2 Determination of Configuration at α-Carbon via NOE Studies 103 3.2.1.3 Comparison of Results to Acyclic Series 105 3.2.2 Observed Selectivities from Generic Grignard Additions 106
– v – 3.3 Conclusions 109 3.4 Experimental Section 110 3.5 References 113 Chapter 4. Future Works and Concluding Remarks 116 Appendix 120 Bibliography 142
– vi – LIST OF EQUATIONS
1.1: Isomerization of 1,4-dienes to form conjugated diene-Fe(CO)3 complexes 5
1.2: Stereoselective iron complexation 9
1.3: Formation of (cyclobutadiene)-Fe(CO)3 15
1.4: Complexation of reactive o-quinodimethane 15
1.5: Addition of tetrafluoroethane to (cyclohexa-1,3-diene)-Fe(CO)3 28
1.6: Ene-type spirocyclizations of amide derivatives 28
1.7: Thermal stability of (methyl 3-methoxycyclohexa-1,3-dienecarboxylate)-Fe(CO)3 31
1.8: Formation of enone from mixture of spirocycle complexes 31
1.9: Double cyclization of an amide-derived complex 33
1.10: Spirocyclization of ester derivatives 33
2.1: Spirocyclizations from derivatives without direct connection to a ketone 51
2.2: Spirocyclizations of dienecarbinol derivatives 53
2.3: Addition of 3-buten-1-ylmagnesium bromide to aldehyde 2.42 58
2.4: Addition of 3-butenyl-1-ylmagnesium bromide to aldehyde 2.52 61
2.5: Cyclization attempt of acetyl-protected alcohol 2.58 under photothermal conditions 64
2.6: Attempted addition of (E/Z)-2.67 to aldehyde 2.42 66
2.7: Addition of Z-2.67 to aldehyde 2.42 67
2.8: Subjection of (4Z)-2.62 to cyclization under photothermal conditions 67
2.9: Addition of dienyl Grignard 2.72 to aldehyde 2.42 69
2.10: Unsuccessful attempt at tandem double cyclization of 2.69 70
3.1: Sodium borohydride reduction of acyclic ketone 3.5 96
3.2: Alkyllithium additions so acyclic ketone 3.7 96
3.3: Conformational equilibrium of acyclic ketone 3.9 96
3.4: Addition of 3-buten-1-ylmagnesium bromide to aldehyde 3.18 100
3.5: Addition of 3-buten-1-ylmagnesium bromide to aldehyde 3.24 102
3.6: Reaction of spirocycles 3.26 with CuCl2 104
– vii – LIST OF SCHEMES
Scheme 1-1: Difference between reaction of Me3NO and other reagents with methoxy- 11 substituted cyclohexadiene.
Scheme 1-2: Total synthesis of trichodermol. 24
Scheme 1-3: Proposed synthesis of verrucarol via dienyl-Fe(CO)3 complex 1.100. 25
Scheme 1-4: Proposed mechanism for cyclization of 1.109a. 32
Scheme 2-1: Sketched approach to Verrucarol from ester 2.22. 52
Scheme 2-2: Alkyl and alkoxide additions to aldehyde 2.23. 52
Scheme 2-3: Synthesis towards methyl ester 2.34 via Michael-Wittig route. 55
Scheme 2-4: Synthetic route to ester 2.34 from benzoic acid. 56
Scheme 2-5: Attempt of formation of ester 2.34 via direct complexation of 2.37. 56
Scheme 2-6: Preparation of aldehyde 2.42 via Mukiayama oxidation. 57
Scheme 2-7: Conversion of regioisomers to aldehyde 2.42 under thermal conditions. 57
Scheme 2-8: Retrosynthetic approach to enone 2.48. 60
Scheme 2-9: Synthetic route to aldehyde 2.52 via Birch reduction of m-anisic acid. 61
Scheme 2-10: Conversion to conjugated and 2.50 from mixture of isomers under basic 61 conditions. Scheme 2-11: Possible depiction for the formation of ketone 2.56 63
Scheme 2-12: Protection of alcohol 2.54 with acetic anhydride and methyl iodide. 64
Scheme 2-13: Synthetic scheme towards synthesis of Grignard reagent (E/Z)-2.67. 65
Scheme 2-14: Synthesis of Grignard reagent 2.67 from cis-2.65. 66
Scheme 2-15: Synthetic scheme towards conjugated diene Grignard 2.72. 69
Scheme 4-1: Retrosynthetic approach to all-carbon spirocycle 4.1 117
– viii – LIST OF FIGURES
Figure 1-1: Examples of reactions involving iron carbonyl derivatives. 2
Figure 1-2: General examples of an acyclic and cyclic η4-(diene)tricarbonyliron derivatives. 2
Figure 1-3: Structures of Fe(CO)5, Fe2(CO)9 and Fe3(CO)12. 3
Figure 1-4: Examples of diene-rearrangements using Fe(CO)5 to form conjugated diene 4 complexes.
Figure 1-5: Iron complexations using Fe2(CO)9 and Fe3(CO)13. 6
Figure 1-6: Examples of heterodiene-Fe(CO)3 complexes. 6
Figure 1-7: Iron complexations utilizing transfer agents. 7
Figure 1-8: Asymmetric iron complexations utilizing heterodiene-Fe(CO)3 derivatives as 8 transfer agents.
Figure 1-9: Demetallations achieved with different oxidizing agents. 10
Figure 1-10: Reactions on diene-Fe(CO)3 substrates that demonstrate the protecting 13 capability of the Fe(CO)3 group.
Figure 1-11: Diene protection from carbene additions. 13
Figure 1-12: Friedel-Crafts acylations of diene-Fe(CO)3 complexes. 14
Figure 1-13: Stabilization of reactive diradicals and carbocations via Fe(CO)3 16 complexation.
Figure 1-14: Stereoselective additions to diene-Fe(CO)3 complexes. 18
Figure 1-15: Stereoselective Diels-Alder cycloadditions using diene-Fe(CO)3 complexes as 19 a source of diene or dienophile.
Figure 1-16: Preparation of dienyl-Fe(CO)3 complexes via hydride abstraction. 20
Figure 1-17: Generic example of cyclohexadienyl-Fe(CO)3 complex. 21
Figure 1-18: Nucleophilic additions to generic methoxycyclohexadienyl-Fe(CO)3 22 derivatives.
Figure 1-19: Product from reaction of 1.91 with strongly basic nucleophiles. 23
Figure 1-20: Radical dimerizations of dienyl-Fe(CO)3 complexes. 26
Figure 1-21: Mechanism of radical dimerization. 26
Figure 1-22: Attempts of intramolecular radical cyclocoupling reactions from dienyl-Fe(CO)3 27 substrates.
Figure 1-23: Spirocyclization of amide diene-Fe(CO)3 complexes with pendant alkene 29 substitution.
Figure 1-24: Pre- and post-cyclization rearrangements of diene-Fe(CO)3 complexes. 30
– ix – Figure 1-25: Cyclization attempts of thioester derivatives under various conditions. 34
Figure 1-26: Primary and secondary electronic effects of different conformations of esters 36 and thioesters. Figure 1-27: Primary and secondary electronic effects of different conformations of amides. 37
Figure 1-28: Preparation of diene-Fe(CO)3 complexes containing a ketone functionality. 38
Figure 2-1: Cyclizations of acyclic diene-Fe(CO)3 complexes under photothermal 49 conditions. Figure 2-2: Cyclizations of ketone derivatives under thermal and photothermal conditions. 50
Figure 2-3: Acorane sesquiterpenes that are potential targets using diene-Fe(CO)3 53 cyclization chemistry. Figure 2-4: Examples of angular triquinanes – potential targets via tandem double 54 cyclizations. Figure 2-5: 1H-NMR spectrum of unpurified 2.44 from reaction under photothermal 59 conditions.
Figure 2-6: 1H-NMR of mixture of spirocycles 2.68 in CDCl3, highlighting the formation of a 68 methyl-triplet.
Figure 2-7: 1H-NMR of crude mixture of spirocycles 2.68 in C6D6, highlighting the 68 separation of two methyl-triplets. Figure 3-1: Depiction of atom arrangement on a carbon attached directly to a terminus of 94 the diene-Fe(CO)3 complex.
Figure 3-2: Consistent relative Rf - values between Ψ-exo/endo diastereomers of different 96 dienylcarbinol-Fe(CO)3 complexes Figure 3-3: Two possible conformation of complexed dienones. 97
Figure 3-4: Accepted model used to explain the observed diastereoselectivities. 98
Figure 3-5: Nucleophilic additions to dienone-Fe(CO)3 complexes. 99
Figure 3-6: Grignard additions to aldehyde 3.20 that afford cyclization substrates. 100
Figure 3-7: 1H-NMR of crude alcohol 3.21. 101
Figure 3-8: 1H-NMR spectra of crude and purified alcohol 3.25. 103
Figure 3-9: Expanded NOESY of enone 3.27, highlighting the cis relationship of the α- 104 proton and methine proton.
Figure 3-10: Assumed relative configurations at the α-carbon of the major isomers 3.25, 105 3.21, and 3.22.
Figure 3-11: Gaussian calculations for the two lowest-energy aldehyde conformations. 108
– x – LIST OF TABLES
Table 2-1: Cyclization of alcohol 2.30 under thermal or photothermal conditions 59
Table 2-2: Cyclization of alcohol 2.54 (major) under thermal and photothermal conditions 62
Table 3-1: Yields and selectivities of different alkylating reagent additions to acyclic 95 dienylcarbaldehyde-Fe(CO)3 complexes.
Table 3-2: Observed selectivities of Grignard additions to aldehyde 3.20 based on the 1H- 106 NMR of the crude products.
– xi – ACKNOWLEDGEMENTS
The number of people who deserve acknowledgement during my tenure at Case Western
Reserve University is extensive, but I will do my best to make sure credit is given where it is due.
First and foremost, I would like to give my utmost gratitude to my advisor, Dr. Anthony J. Pearson, for being a great mentor and advisor during my graduate studies. Not only were his insights and advice greatly applicable in the classroom and the lab, but also in regards to life outside of Millis hall. The atmosphere he provided allowed me to grow academically and intellectually without judgement or prejudice — certainly a culture that epitomized educational growth in the most effective manner. For all of the “chalk-talks” on frontier molecular orbitals, reaction mechanisms, and discussions on teaching methods and the joys of home ownership, I am truly grateful. I would also like to extend my sincere gratitude to lab mates Aaron Mulheren and Minxue Huang for their work with the general Grignard-addition studies and the preparation of hexa-3,5-dien-1-yl magnesium bromide, respectively. They both are great chemists and have bright futures ahead of them.
For assistance with Gaussian calculations, much appreciation to Dr. Thomas Gray is well- deserved. He really came in the clutch in the eleventh hour, and I cannot thank him enough for that.Many thanks to Prashansa Agrawal is also necessary, as she did a great job helping me with my 2D-NMR experiments.
I would also like to acknowledge Kathryn Howard, Jim Sill, Jim Faulk, Matthew Evans, Suzi
Mason, June Ilhan, Dave Carrino, Rehka Srinivasan, Raul Juarez and the rest of my graduate friends for their assistance in my day-to-day duties/activities. In regards to teaching, the insight provided by Dr. Sri and Dr. Juarez was priceless and I cannot thank them enough for that. For all other miscellaneous needs and random discussions, I thank the rest of the aforementioned people, as many of my work- and social-related interests were made very pleasant and enjoyable because of your help.
I would like to give a special thank-you to Dr. Forrest Etheridge and Jon Flikkema — my greatest friends during my time at Case. As the saying goes, “time with a friend is time well- spent”, and I would not have enjoyed my five years in graduate school if it were not for these fine
– xii – gentlemen. Whether it was talking chemistry, watching movies, or enjoying a quality cigar with whisky while discussing life in general, it was certainly time well-spent.
To my family I am the most grateful. I would not be where I am today if it were not for the incredible strength of my mother and support of my brothers. The odds we overcame were great, and it was because of each other we made it to where we are now.
And last but not least, I would like to thank my truly amazing wife and my beautiful baby girl,
Clara. The internal drive to be the best man I can be is most certainly fueled by the flames you ignite within me. For your love and support I am truly blessed.
– xiii – LIST OF ABBREVIATIONS acac acetylacetonate ion q quartet
ADD 1,1’-(azadicarbonyl)-dipiperidine Rf retention factor Ar aryl group rt room temperature BOC t-butoxycarbonyl s singlet CAN ceric ammonium nitrate t triplet cat. catalytic TBDPS t-butyldiphenylsilyl CO carbon monoxide tBuOK potassium t-butoxide d doublet THF tetrahydrofuran DBU 1,8-diazabicyclo[5.4.0]undec-7-ene TLC thin layer chromatography DIBAL di-i-butylaluminum hydride Δ heat/reflux Et ethyl δ chemical shift
Et2O diethyl ether EtOAc ethyl acetate EtOH ethanol HRMS high-resolution mass spectrometry hν UV-light i-Pr i-propyl LAH lithium aluminum hydride LDA lithium diisopropylamide m multiplet Me methyl
Me2SO4 dimethyl sulfate n-Bu2O n-butyl ether Nu nucleophile OMe methoxy group p-TsOH p-toluenesulfonic acid
Ph3PO triphenylphosphine oxide
PPh3 triphenylphosphine
– xiv – ABSTRACT
All–Carbon Ene–Type Cyclizations from Cyclohexadiene-tricarbonyliron Derivatives
by
KEITH B. BEACH
Diene-tricarbonyliron chemistry has found great utility in organic synthesis. One area of particular interest utilizes an iron-promoted ene-type reaction to facilitate spirocyclization or tandem double-cyclization when a pendant alkene or diene is available, respectively. Previously in the Pearson lab, spirocyclizations as well as double-cyclizations have been reported starting from compounds containing a heteroatom (O, S, NPh) within the tethered side chain. The work herein focuses on the preparation of cyclization products containing an all-carbon backbone, such as 1. The intriguing aspect of this fundamental research is that synthesis of potential natural product-derivatives may be achieved, in particular those of the angular triquinane class.
Investigations of the generality of stereocontrol during Grignard additions used in the formation of
2 will also be described.
– xv – CHAPTER ONE
GENERAL INTRODUCTION: DIENE–TRICARBONYLIRON COMPLEXES Chapter 1 General Introduction
1.1 General Properties and Applications
Since the late 19th century, iron carbonyl in its many forms has commonly and effectively been used to carry out a vast number of organic transformations. Ranging from alkene isomerizations to deoxygenations, iron carbonyl has provided a relatively simple yet efficient approach to such conversions while also proving to be a cheaper alternative compared to its other transition-metal counterparts (Figure 1-1).1-7 The focus of this dissertation, however, is not
Figure 1-1: Examples of reactions involving iron carbonyl derivatives. to be directed towards the broad scope of general iron carbonyl chemistry, but to a set of derivatives that stem from the reaction of iron carbonyl with a diene ligand (Figure 1-2).
Figure 1-2: General examples of an acyclic and cyclic η4-(diene)tricarbonyliron derivatives.
The use of such a moiety in organic synthesis has presented great advantages for those who have employed it in their research. Not only is the formation of diene-tricarbonyliron substrates achieved under relatively mild conditions, the removal of the metallic group is easily
– 2 – Chapter 1 General Introduction accomplished as well, doing so without any harm inflicted on the rest of the molecule. The primary benefits of using these types of “functional groups”, however, are better realized when the diene-tricarbonyliron moiety is used as a protecting group, stabilizing group and/or stereodirecting group, which will be discussed in the subsequent sections.7-14
1.1.1 Scope of Diene-Tricarbonyliron Complexes
1.1.1.1 Iron Carbonyl Reagents Used for Complexation
Before elaborating on the applications of diene-tricarbonyliron functionalities in organic synthesis, introduction to the formation of such compounds is beneficial. Preparation of these diene-iron complexes can be achieved relatively easily using a variety of iron carbonyl reagents and conditions.6-7,15 The most common and applicable of said iron carbonyls are iron pentacarbonyl [Fe(CO)5], diiron nonacarbonyl [Fe2(CO)9] and triiron dodecacarbonyl [Fe3(CO)12], which are the only known neutral-stable carbonyls of iron (Figure 1-3).6-7,16