New Applications of Cyclobutadiene Cycloadditions: Diversity and Target Oriented Synthesis
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A-PDF Split DEMO : Purchase from to Remove the Watermark
A-PDF Split DEMO : Purchase from www.A-PDF.com to remove the watermark Figure 7.5 (a) Transition state for E2H-syn elimination. (b) Transition state for E2H-anti elimination. (c) Transition state for E,C elimination. tion state similar to that shown in Figure 7.5~is expected, since base attacks the molecule backside to the leaving group but frontside to the /3 hydrogen. Let us now turn to the experimental results to see if these predictions are borne out in fact. It has long been known that E2H reactions normally give preferentially anti elimination. For example, reaction of meso-stilbene dibromide with potassium ethoxide gives cis-bromostilbene (Reaction 7.39), whereas reaction of the D,L-dibromide gives the trans product (Reaction 7.40).lo2 A multitude of other examples exist-see, for example, note 64 (p. 355) and note 82 (p. 362). E2H reactions do, however, give syn elimination when: (1) an H-X di- hedral angle of 0" is achievable but one of 180" is not or, put another way, H and X can become syn-periplanar but not trans-periplanar ; (2) a syn hydrogen is much more reactive than the anti ones; (3) syn elimination is favored for steric reasons; and (4) an anionic base that remains coordinated with its cation, that, in turn, is coordinated with the leaving group, is used as catalyst. The very great importance of category 4 has only begun to be fully realized in the early 1970s. lo2 P. Pfeiffer, 2. Physik. Chem. Leibrig, 48, 40 (1904). 1,2-Elimination Reactions 371 An example of category 1 is found in the observation by Brown and Liu that eliminations from the rigid ring system 44, induced by the sodium salt of 2- cyclohexylcyclohexanol in triglyme, produces norborene (98 percent) but no 2-de~teronorbornene.~~~The dihedral angle between D and tosylate is O", but Crown ether present: No Yes that between H and tosylate is 120". -
Nomenclature Cyclic Aliphatic Hydrocarbons Are Named By
An alicyclic compound is an organic compound that is both aliphatic and cyclic. They contain one or more all-carbon rings which may be either saturated or unsaturated, but do not have aromatic character. Alicyclic compounds may have one or more aliphatic side chains attached. The simplest alicyclic compounds are the 1. monocyclic cycloalkanes: cyclopropane, cyclobutane, cyclopentane, cyclohexane, cyclohepta ne, cyclooctane, and so on. 2. Bicyclic alkanes include bicycloundecane, decalin, and housane. 3. Polycyclic alkanes include cubane, basketane, and tetrahedrane. Spiro compounds have two or more rings that are connected through only one carbon atom. Nomenclature Cyclic aliphatic hydrocarbons are named by prefixing cyclo- to the name of the corresponding open-chain hydrocarbon having the same number of carbons as the ring. For example: Cyclopropane Cyclobutane Cyclopentane Cyclopentene Substituents on the ring- alkyl, groups, halogens- are named and their positions indicated by numbers. Chlorocyclopropane 1,1- Dimethylyclopentane 1,3-Dimethylcyclohexane CH3 CH3 Cl H3C CH3 In simple cycloalkenes and cycloalkynes the double and triply bonded carbons are considered to occupy positions 1 and 2. For example: 3-Ethylcyclopentene 1,3-Cyclohexadiene H3C For convenience, aliphatic rings are often represented by simple geometric figures: a triangle for cyclopropane, a square for cyclobutane, a pentagon for cyclopentane, a hexagon for cyclohexane and so on. It is understood that two hydrogens are located at each corner of the figure unless some other group is indicated. For example H3C cyclopentane 3-Ethylcyclopentene 1,3-Cyclopentadiene CH3 CH3 Cl CH Cyclohexane 3 1,3-Dimethylcyclohexane 2- Chloro-1-methylcyclohexane As usual alcohols are given the ending –ol, which takes priority over –ene and appears last in the name. -
CHEMISTRY 412/512 MIDTERM # 1 – Answer Key February 14, 2007 1
CHEMISTRY 412/512 MIDTERM # 1 – answer key February 14, 2007 1. (8 pts) Acyl cations ( RCO ) are key intermediates in Friedel – Crafts acylation reactions. They are stabilized by the presence of oxygen and this can be demonstrated through either resonance or MO analysis. a. Consider the formyl cation, shown below. Show how it is stabilized, using appropriate resonance structures. HCO formyl cation HCO HCO Acyl cations are stabilized by conjugation of one of the lone pairs at the oxygen center. b. Construct the orbital mixing diagram for the formyl cation, starting with group orbitals for CH and O-atom. Consider only first order mixing. Place the appropriate number of valence electrons and demonstrate how QMOT explains the stabilization of the cation. O HC The mixing diagram clearly shows the formation of TWO equivalent π-bonds, which is analogous to the resonance structure on the right, i.e. there is significant contribution by the O-atom. 2. (6 pts) Antiaromatic molecules avoid antiaromaticity by structural distortion. For example, cyclobutadiene is not square (and antiaromatic) but rectangular. Show, using π-group orbital analysis, that such distortion would indeed be stabilizing. square rectangular Solution: Instability of square cyclobutadiene is due to the presence of two degenerate, half-filled π-molecular orbitals (π2 and π3). In the rectangular form, qualitatively, the MOs remain the same, but the strength of some bonding/antibonding interactions is affected and it causes the degeneracy to be lifted. Focus on π2 and π3. Upon stretching, the antibonding interaction in π2 is reduced, while the same geometric distortion leads to reduction of the bonding interaction in π3. -
Here Science-Based Cost- Effective Pathways Forward?
Sponsors Institute of Atomic and Molecular Sciences, Academia Sinica, Taiwan PIRE-ECCI Program, UC Santa Barbara, USA Max-Planck-Gesellschaft, Germany National Science Council, Taiwan Organizing committee Dr. Kuei-Hsien Chen (IAMS, Academia Sinica, Taiwan) Dr. Susannah Scott (University of California - Santa Barbara, USA) Dr. Alec Wodtke (University of Göttingen & Max-Planck-Gesellschaft, Germany) Table of Contents General Information .............................................................................................. 1 Program for Sustainable Energy Workshop ....................................................... 3 I01 Dr. Alec M. Wodtke Beam-surface Scattering as a Probe of Chemical Reaction Dynamics at Interfaces ........................................................................................................... 7 I02 Dr. Kopin Liu Imaging the steric effects in polyatomic reactions ............................................. 9 I03 Dr. Chi-Kung Ni Energy Transfer of Highly Vibrationally Excited Molecules and Supercollisions ................................................................................................. 11 I04 Dr. Eckart Hasselbrink Energy Conversion from Catalytic Reactions to Hot Electrons in Thin Metal Heterostructures ............................................................................................... 13 I05 Dr. Jim Jr-Min Lin ClOOCl and Ozone Hole — A Catalytic Cycle that We Don’t Like ............... 15 I06 Dr. Trevor W. Hayton Nitric Oxide Reduction Mediated by a Nickel Complex -
An Indicator of Triplet State Baird-Aromaticity
inorganics Article The Silacyclobutene Ring: An Indicator of Triplet State Baird-Aromaticity Rabia Ayub 1,2, Kjell Jorner 1,2 ID and Henrik Ottosson 1,2,* 1 Department of Chemistry—BMC, Uppsala University, Box 576, SE-751 23 Uppsala, Sweden; [email protected] (R.A.); [email protected] (K.J.) 2 Department of Chemistry-Ångström Laboratory Uppsala University, Box 523, SE-751 20 Uppsala, Sweden * Correspondence: [email protected]; Tel.: +46-18-4717476 Received: 23 October 2017; Accepted: 11 December 2017; Published: 15 December 2017 Abstract: Baird’s rule tells that the electron counts for aromaticity and antiaromaticity in the first ππ* triplet and singlet excited states (T1 and S1) are opposite to those in the ground state (S0). Our hypothesis is that a silacyclobutene (SCB) ring fused with a [4n]annulene will remain closed in the T1 state so as to retain T1 aromaticity of the annulene while it will ring-open when fused to a [4n + 2]annulene in order to alleviate T1 antiaromaticity. This feature should allow the SCB ring to function as an indicator for triplet state aromaticity. Quantum chemical calculations of energy and (anti)aromaticity changes along the reaction paths in the T1 state support our hypothesis. The SCB ring should indicate T1 aromaticity of [4n]annulenes by being photoinert except when fused to cyclobutadiene, where it ring-opens due to ring-strain relief. Keywords: Baird’s rule; computational chemistry; excited state aromaticity; Photostability 1. Introduction Baird showed in 1972 that the rules for aromaticity and antiaromaticity of annulenes are reversed in the lowest ππ* triplet state (T1) when compared to Hückel’s rule for the electronic ground state (S0)[1–3]. -
Using SMILES Strings for the Description of Chemical Connectivity in the Crystallography Open Database
Quirós et al. J Cheminform (2018) 10:23 https://doi.org/10.1186/s13321-018-0279-6 RESEARCH ARTICLE Open Access Using SMILES strings for the description of chemical connectivity in the Crystallography Open Database Miguel Quirós1* , Saulius Gražulis2,3 , Saulė Girdzijauskaitė3, Andrius Merkys2 and Antanas Vaitkus2 Abstract Computer descriptions of chemical molecular connectivity are necessary for searching chemical databases and for predicting chemical properties from molecular structure. In this article, the ongoing work to describe the chemical connectivity of entries contained in the Crystallography Open Database (COD) in SMILES format is reported. This col- lection of SMILES is publicly available for chemical (substructure) search or for any other purpose on an open-access basis, as is the COD itself. The conventions that have been followed for the representation of compounds that do not ft into the valence bond theory are outlined for the most frequently found cases. The procedure for getting the SMILES out of the CIF fles starts with checking whether the atoms in the asymmetric unit are a chemically accept- able image of the compound. When they are not (molecule in a symmetry element, disorder, polymeric species,etc.), the previously published cif_molecule program is used to get such image in many cases. The program package Open Babel is then applied to get SMILES strings from the CIF fles (either those directly taken from the COD or those produced by cif_molecule when applicable). The results are then checked and/or fxed by a human editor, in a computer-aided task that at present still consumes a great deal of human time. -
Cyclobutadiene
View metadata, citation and similar papers at core.ac.uk brought to you by CORE Published in "Angewandte Chemie International Edition 45(40): 6616 - 6619, 20 provided by RERO DOC Digital Library which should be cited to refer to this work. Cyclobutadiene: The Antiaromatic Paradigm? Thomas Bally* Keywords: In memory of Satoru Masamune antiaromaticity · cyclobutadiene · thermochemistry (1928–2003) There is probably no other single widely accepted (and hardly disputed) London proposed in 1937 a very appeal- molecule that has fascinated experimen- that benzene, with its six cyclically ing model that accounts for these effects tal and theoretical chemists so consis- delocalized p electrons, represents the in terms of ring currents that are in- tently over the past 40 years as has paradigm of aromaticity. In view of the duced by the external magnetic field in cyclobutadiene (CBD). On average, famous Hckel 4n/4n + 2 electron rule, the system of cyclically delocalized 16 publications which deal, in one form one is tempted to rush to the conclusion p electrons.[5] or another, with the parent compound that CBD, with its four cyclically delo- There has been a vigorous debate in p C4H4 and 40 which deal with cyclo- calized electrons, is therefore the recent years about whether and to what butdienes in general have appeared in paradigm of antiaromaticity. extent these ring currents contribute to every year of this time span, and there However, this conclusion is not as the deshielding or shielding of protons are probably many more on derivatives straightforward as it might seem, be- attached to aromatic or antiaromatic and metal complexes. -
The Relation Between Ring Currents and Aromatic Stabilization Energies for Assessing the Degree of Aromaticity
The Relation Between Ring Currents and Aromatic Stabilization Energies for Assessing the Degree of Aromaticity Chandan Kumar,y Heike Fliegl,∗,y and Dage Sundholm∗,z yCentre for Theoretical and Computational Chemistry, Department of Chemistry, University of Oslo, P.O.Box 1033, N-1315 Blindern, Norway zDepartment of Chemistry, University of Helsinki, P.O. Box 55 (A. I. Virtanens Plats 1), FIN-00014, Finland E-mail: heike.fl[email protected]; [email protected].fi 1 Abstract Magnetically induced ring-current strength susceptibilities and nucleus independent chemical shifts (NICS) have been studied for 15 single-ring aromatic, antiaromatic and nonaromatic molecules. The current densities have been calculated at the density func- tional theory (DFT), Hartree-Fock (HF), and second-order Møller-Plesset perturbation theory (MP2) levels using the gauge-including magnetically induced current method (GIMIC). The ring-current strength susceptibilities have been obtained by numerical integration of the current density flowing around the molecular ring. The calculated ring-current strength susceptibilities are almost independent of the level of theory. The relative degree of aromaticity deduced from the magnetic properties has been compared with the ones deduced from hydrogenation enthalpies that are considered to be propor- tional to aromatic stabilization energies (ASE). For the studied single-ring molecules, GIMIC, NICS and ASE calculations yield similar trends. The study shows that there is a linear correlation between the magnetic and energetic criteria of aromaticity. The largest uncertainty originates from the accuracy of the energy data, because they are much more dependent on the employed computational level than the calculated mag- netic properties. Thus, ring-current strength susceptibilities can be used for assessing the degree of aromaticity. -
The X1 Method for Accurate and Efficient Prediction of Heats of Formation
THE JOURNAL OF CHEMICAL PHYSICS 127, 214105 ͑2007͒ The X1 method for accurate and efficient prediction of heats of formation ͒ Jianming Wu and Xin Xua State Key Laboratory of Physical Chemistry of Solid Surfaces and Center for Theoretical Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China ͑Received 31 July 2007; accepted 25 September 2007; published online 5 December 2007͒ We propose the X1 method which combines the density functional theory method with a neural network ͑NN͒ correction for an accurate yet efficient prediction of heats of formation. It calculates the final energy by using B3LYP/6-311+G͑3df,2p͒ at the B3LYP/6-311+G͑d,p͒ optimized geometry to obtain the B3LYP standard heats of formation at 298 K with the unscaled zero-point energy and thermal corrections at the latter basis set. The NN parameters cover 15 elements of H, Li, Be, B, C, N, O, F, Na, Mg, Al, Si, P, S, and Cl. The performance of X1 is close to the Gn theories, giving a mean absolute deviation of 1.43 kcal/mol for the G3/99 set of 223 molecules up to 10 nonhydrogen atoms and 1.48 kcal/mol for the X1/07 set of 393 molecules up to 32 nonhydrogen atoms. © 2007 American Institute of Physics. ͓DOI: 10.1063/1.2800018͔ I. INTRODUCTION the B3LYP method to calculate heats of formation of neutral organic molecules. Their results are promising. Calibrated ͑⌬ ͒ The accurate prediction of heats of formation Hf is with their own compilation of 180 organic molecules for the one of the central topics in computational chemistry. -
Highly Unsaturated Binuclear Butadiene Iron Carbonyls: Quintet Spin States, Perpendicular Structures, Agostic Hydrogen Atoms, and Iron-Iron Multiple Bonds
Int. J. Mol. Sci. 2011, 12, 2216-2231; doi:10.3390/ijms12042216 OPEN ACCESS International Journal of Molecular Sciences ISSN 1422-0067 http://www.mdpi.com/journal/ijms Article Highly Unsaturated Binuclear Butadiene Iron Carbonyls: Quintet Spin States, Perpendicular Structures, Agostic Hydrogen Atoms, and Iron-Iron Multiple Bonds Yi Zeng 1, Shijian Wang 1, Hao Feng 1,*, Yaoming Xie 2 and R. Bruce King 2,* 1 School of Physics and Chemistry, Research Center for Advanced Computation, Xihua University, Chengdu, China; E-Mails: [email protected] (Y.Z.); [email protected] (S.W.) 2 Department of Chemistry and Center for Computational Chemistry; University of Georgia, Athens, GA 30602, USA; E-Mail: [email protected] * Authors to whom correspondence should be addressed; E-Mails: [email protected] (H.F.); [email protected] (R.B.K.); Tel.: +86-28-87727663 (H.F.); +1-706-542-1901 (R.B.K.); Fax: +1-706-542-9454 (R.B.K.). Received: 22 February 2011; in revised form: 8 March 2011 / Accepted: 14 March 2011 / Published: 30 March 2011 Abstract: The highly unsaturated binuclear butadiene iron carbonyls (C4H6)2Fe2(CO)n (n = 2, 1) have been examined using density functional theory. For (C4H6)2Fe2(CO)n (n = 2, 1), both coaxial and perpendicular structures are found. The global minima of (C4H6)2Fe2(CO)n (n = 2, 1) are the perpendicular structures 2Q-1 and 1Q-1, respectively, with 17- and 15-electron configurations for the iron atoms leading to quintet spin states. The Fe=Fe distance of 2.361 Å (M06-L) in the (C4H6)2Fe2(CO)2 structure 2Q-1 suggests a formal double bond. -
Fluorinated Butatrienes
Fluorinated Butatrienes Dissertation zur Erlangung des akademischen Grades des Doktors der Naturwissenschaften (Dr. rer. nat.) eingereicht im Fachbereich Biologie, Chemie, Pharmazie der Freien Universität Berlin vorgelegt von Dipl.-Chem. Christian Ehm aus Berlin Berlin, April 2010 1. Gutachter: Prof. Dr. Dieter Lentz 2. Gutachter: Prof. Dr. Beate Paulus Disputation am 28.6.2010 I Acknowledgements It would not have been possible to write this doctoral thesis without the help and support of the kind people around me, to only some of whom it is possible to give particular mention here. First and foremost I would like to thank my principal supervisor, Professor Dieter Lentz, for the opportunity of doing research in his group. Without his continuous support and encouragement this thesis would not be in the present state. I highly appreciate that Professor Beate Paulus has agreed to be co-referee of my thesis. I would like to cordially thank Lada for her love and patience as well as her interest in my research. Special thanks to my family for their continuous support and love. I would like to thank Mike Roland, Sten Dathe and Sven Wünsche for their friendship and the fun we have had every Sunday evening. Special thanks to Sebastian Freitag, Boris Bolsinger and Frederic Heinrich for their friendship. They deserve much gratefulness for keeping me on the right way. I would like to thank all my colleagues at the Institut für Chemie und Biochemie, Abteilung Anorganische Chemie. In particular I want to thank all members of the Lentz group, Thomas Hügle, Moritz Kühnel, Dr. Floris Akkerman, Dr. -
I. the Low Temperature Photochemistry of Iron Pentacarbonyl and Disubstituted Acetylenes, II
Iowa State University Capstones, Theses and Retrospective Theses and Dissertations Dissertations 1971 I. The low temperature photochemistry of iron pentacarbonyl and disubstituted acetylenes, II. The X-ray structure determination of trans-6,8-dibromo-1,2,3,4,4a,9a- hexahydro-4a,9-dimethylcarbazole Allen Bloom Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/rtd Part of the Organic Chemistry Commons Recommended Citation Bloom, Allen, "I. The low temperature photochemistry of iron pentacarbonyl and disubstituted acetylenes, II. The -rX ay structure determination of trans-6,8-dibromo-1,2,3,4,4a,9a-hexahydro-4a,9-dimethylcarbazole " (1971). Retrospective Theses and Dissertations. 4943. https://lib.dr.iastate.edu/rtd/4943 This Dissertation is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Retrospective Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. 72-5178 BLOOM, Allen, 1943- Ï. THE LOW TEMPERATURE PHOTOCHEMISTRY OF IRON PENTACARBONYL AND DISUBSTITUTED ACETYLENES. II. THE X-RAY STRUCTURE DETERMINATION OF trans- 6,8,-DIBROMO-l,2,3,4,4a,9a-HEXAHYDR0-4a,9- DIMETHYLCARBAZOLE. Iowa State University, Ph.D., 1971 Chemistry, organic University Microfilms, A XEROX Company, Ann Arbor, Michigan THIS DISSERTATION HAS BEEN MICROFLIMED EXACTLY AS RECEIVED I. The low temperature photochemistry of iron pentacarbonyl and disubstituted acetylenes II. The X-ray structure determination of tranB-6,8- dibromo-1,2,3,4,4a,9a-hexahydro-4a,9-dimethylcarbazole By Allen Bloom  Dissertation Submitted to the Graduate Faculty in Partial Fulfillment of The Requirements for the Degree of DOCTOR OF PHILOSOPHY Major Subject: Organic Chemistry Approved: Signature was redacted for privacy.