Testing the Hypothesis That the Nylonase Nylb Protein Arose De Novo Via a Frameshift Mutation
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Composition and Diversity of Endophytic Bacterial Communities in Noni (Morinda Citrifolia L.) Seeds
International Journal of Agricultural Policy and Research Vol.2 (3), pp. 098-104, March 2014 Available online at http://www.journalissues.org/ijapr/ © 2014 Journal Issues ISSN 2350-1561 Original Research Paper Composition and diversity of endophytic bacterial communities in noni (Morinda citrifolia L.) seeds Accepted 14 February, 2014 *1Liu Yang, 1Yao Su , 2Xu The objective of this study is to investigate the endophytic bacterial Pengpeng , 1Cao Yanhua , communities in Noni (Morinda citrifolia L.) seeds. By using high-throughput 1 1 sequencing (HTS) technique, a research on the diversity of endophytic Li Jinxia , Wang bacterial communities in Noni seed samples was conducted by this paper, 3 Jiemiao , Tan Wangqiao, which were collected from four planting locations in the introduction and 1Cheng Chi cultivation base of Hainan Noni Biological Engineering Development Co., Ltd. in Sanya. A total of 268159 sequences and 2870 Operational Taxonomic Units 1 China National Research Institute (OTUs) were obtained from the seed samples, which were classified into N1, of Food and Fermentation N2, N3 and N4, through HTS by bioinformatics analysis. The results showed Industries, Beijing 100015, People’s that there was a good consistency between bacterial community structure and Republic of China distribution of dominant genus in all samples. A mount of 10 OTUs of the most 2 Beijing Geneway Technology Co., Ltd., Beijing 100010, People’s abundance associated with the four sample libraries were found to be related Republic of China. to Pelomonas sp., Ochrobactrum intermedium, Kinneretia sp., Serratia sp., 3 Hainan Noni Biological Paucibacter sp., Leptothrix sp., Inhella sp., Ewingella sp., Thiomonas sp. and Engineering Development Co., Ltd., Massilia sp..This study has laid a solid foundation for further study in Haikou 570125, People’s Republic beneficial microbes, which would help to improve the growth and efficacy of of China. -
NCTC) Bacterial Strain Equivalents to American Type Culture Collection (ATCC) Bacterial Strains
This list shows National Collection of Type Cultures (NCTC) bacterial strain equivalents to American Type Culture Collection (ATCC) bacterial strains. NCTC Number CurrentName ATCC Number NCTC 7212 Acetobacter pasteurianus ATCC 23761 NCTC 10138 Acholeplasma axanthum ATCC 25176 NCTC 10171 Acholeplasma equifetale ATCC 29724 NCTC 10128 Acholeplasma granularum ATCC 19168 NCTC 10172 Acholeplasma hippikon ATCC 29725 NCTC 10116 Acholeplasma laidlawii ATCC 23206 NCTC 10134 Acholeplasma modicum ATCC 29102 NCTC 10188 Acholeplasma morum ATCC 33211 NCTC 10150 Acholeplasma oculi ATCC 27350 NCTC 10198 Acholeplasma parvum ATCC 29892 NCTC 8582 Achromobacter denitrificans ATCC 15173 NCTC 10309 Achromobacter metalcaligenes ATCC 17910 NCTC 10807 Achromobacter xylosoxidans subsp. xylosoxidans ATCC 27061 NCTC 10808 Achromobacter xylosoxidans subsp. xylosoxidans ATCC 17062 NCTC 10809 Achromobacter xylosoxidans subsp. xylosoxidans ATCC 27063 NCTC 12156 Acinetobacter baumannii ATCC 19606 NCTC 10303 Acinetobacter baumannii ATCC 17904 NCTC 7844 Acinetobacter calcoaceticus ATCC 15308 NCTC 12983 Acinetobacter calcoaceticus ATCC 23055 NCTC 8102 acinetobacter dna group 13 ATCC 17903 NCTC 10304 Acinetobacter genospecies 13 ATCC 17905 NCTC 10306 Acinetobacter haemolyticus ATCC 17907 NCTC 10305 Acinetobacter haemolyticus subsp haemolyticus ATCC 17906 NCTC 10308 Acinetobacter johnsonii ATCC 17909 NCTC 10307 Acinetobacter junii ATCC 17908 NCTC 5866 Acinetobacter lwoffii ATCC 15309 NCTC 12870 Actinobacillus delphinicola ATCC 700179 NCTC 8529 Actinobacillus equuli ATCC 19392 -
Legionella Shows a Diverse Secondary Metabolism Dependent on a Broad Spectrum Sfp-Type Phosphopantetheinyl Transferase
Legionella shows a diverse secondary metabolism dependent on a broad spectrum Sfp-type phosphopantetheinyl transferase Nicholas J. Tobias1, Tilman Ahrendt1, Ursula Schell2, Melissa Miltenberger1, Hubert Hilbi2,3 and Helge B. Bode1,4 1 Fachbereich Biowissenschaften, Merck Stiftungsprofessur fu¨r Molekulare Biotechnologie, Goethe Universita¨t, Frankfurt am Main, Germany 2 Max von Pettenkofer Institute, Ludwig-Maximilians-Universita¨tMu¨nchen, Munich, Germany 3 Institute of Medical Microbiology, University of Zu¨rich, Zu¨rich, Switzerland 4 Buchmann Institute for Molecular Life Sciences, Goethe Universita¨t, Frankfurt am Main, Germany ABSTRACT Several members of the genus Legionella cause Legionnaires’ disease, a potentially debilitating form of pneumonia. Studies frequently focus on the abundant number of virulence factors present in this genus. However, what is often overlooked is the role of secondary metabolites from Legionella. Following whole genome sequencing, we assembled and annotated the Legionella parisiensis DSM 19216 genome. Together with 14 other members of the Legionella, we performed comparative genomics and analysed the secondary metabolite potential of each strain. We found that Legionella contains a huge variety of biosynthetic gene clusters (BGCs) that are potentially making a significant number of novel natural products with undefined function. Surprisingly, only a single Sfp-like phosphopantetheinyl transferase is found in all Legionella strains analyzed that might be responsible for the activation of all carrier proteins in primary (fatty acid biosynthesis) and secondary metabolism (polyketide and non-ribosomal peptide synthesis). Using conserved active site motifs, we predict Submitted 29 June 2016 some novel compounds that are probably involved in cell-cell communication, Accepted 25 October 2016 Published 24 November 2016 differing to known communication systems. -
7. References
University of Akureyri Department of Natural Resource Science 7. References Ammann, E. C., Reed, L. L., & Durichek, J. J. (1968). Gas consumptions and Growth Rate of Hydrogenomonas eutropha in Continuous Culture. Applied Microbiology , 16, (6), 822-826. Aguiar, P., Beveridge, T. J., & Reysenbach, A.-L. (2004). Sulfurihydrogenibium azorense, sp. nov., a thermophilic hydrogen oxidizing microaerophile from terrestrial hot springs in the Azores. International Journal of Systematic and Evolutionary Microbiology , 54, 33-39. Altschul, S., Gish, W., Miller, W., Myers, E., & Lipman, D. (1990). "Basic local alignment search tool.". J. Mol. Biol. , 215:403-410. Amend, J., & Shock, E. (2001). Energetics of overall metabolic reactions of thermophilic and hyperthermophilic Archaea and Bacteria. FEMS Microbiology Reviews , 25, 175-243. Aragno, M. (1978). Enrichment, isolation and preliminary characterization of a thermophilic, endospore-forming hydrogen bacterium. FEMS Micobiol. Lett. , 3: 13-15. Aragno, M. (1992). The Thermophilic, Aerobic, Hydrogen-Oxidizing (Knallgas) Bacteria. In A. Balows, H. Trüper, M. Dworkin, W. Harder, & K. Schleifer, The Prokaryotes, a handbook on biology of bacteria. 2nd ed. vol. 4 (pp. 3917-3933.). New York: Springer Verlag. Aragno, M., & Schlegel, H. G. (1992). The mesophilic Hydrogen-Oxidizing (Knallgas) Bacteria. In A. Balows, H. Truper, M. Dworkin, W. Harder, & K.-H. Schleifer, The Prokaryotes 2nd. ed. (pp. 344-384). New York: Springer. Ármannson, H. (2002, May 30-31). Erindi á ráðstefnu um málefni veitufyrirtækja . Grænt bókhald í jarðhita- samanburður á útblæstri við aðra orkugjafa . Akureyri, Iceland: Samorka. Bae, S., Kwak, K., Kim, S., Chung, S., & Igarashi, Y. (2001). Isolation and Characterization of CO2-Fixing Hydrogen -Oxidizing Marine 109 University of Akureyri Department of Natural Resource Science Bacteria. -
Acteurs Et Mécanismes Des Bio-Transformations De L'arsenic, De
Acteurs et mécanismes des bio-transformations de l’arsenic, de l’antimoine et du thallium pour la mise en place d’éco-technologies appliquées à la gestion d’anciens sites miniers Elia Laroche To cite this version: Elia Laroche. Acteurs et mécanismes des bio-transformations de l’arsenic, de l’antimoine et du thallium pour la mise en place d’éco-technologies appliquées à la gestion d’anciens sites miniers. Sciences de la Terre. Université Montpellier, 2019. Français. NNT : 2019MONTG048. tel-02611018 HAL Id: tel-02611018 https://tel.archives-ouvertes.fr/tel-02611018 Submitted on 18 May 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. THÈSE POUR OBTENIR LE GRADE DE DOCTEUR DE L’UNIVERSITÉ DE MONT PELLIER En Sciences de l’Eau École doctorale GAIA Unité de recherche Hydrosciences Montpellier UMR 5569 Unité de recherche GME (Géomicrobiologie et Monitoring Environnemental) du BRGM, Orléans Acteurs et mécanismes des bio-transformations de l’arsenic, de l’antimoine et du thallium pour la mise en place d’éco -technologies appliquées à la gestion d’anciens -
Simple Or Complex Organic Substrates Inhibit Arsenite
Simple or complex organic substrates inhibit arsenite oxidation and aioA gene expression in two β-Proteobacteria strains Tiffanie Lescure, Catherine Joulian, Clément Charles, Taoikal BenAli Saanda, Mickael Charron, Dominique Breeze, Pascale Bauda, Fabienne Battaglia-Brunet To cite this version: Tiffanie Lescure, Catherine Joulian, Clément Charles, Taoikal Ben Ali Saanda, Mickael Charron, et al.. Simple or complex organic substrates inhibit arsenite oxidation and aioA gene expres- sion in two β-Proteobacteria strains. Research in Microbiology, Elsevier, 2020, 171 (1), pp.13-20. 10.1016/j.resmic.2019.09.006. insu-02298717 HAL Id: insu-02298717 https://hal-insu.archives-ouvertes.fr/insu-02298717 Submitted on 27 Sep 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution - NonCommercial - NoDerivatives| 4.0 International License Journal Pre-proof Simple or complex organic substrates inhibit arsenite oxidation and aioA gene expression in two β-Proteobacteria strains Tiffanie Lescure, Catherine Joulian, Clément Charles, Taoikal Ben Ali Saanda, Mickael Charron, Dominique Breeze, Pascale Bauda, Fabienne Battaglia-Brunet PII: S0923-2508(19)30100-7 DOI: https://doi.org/10.1016/j.resmic.2019.09.006 Reference: RESMIC 3741 To appear in: Research in Microbiology Received Date: 21 June 2019 Revised Date: 4 September 2019 Accepted Date: 6 September 2019 Please cite this article as: T. -
The Risk to Human Health from Free-Living Amoebae Interaction with Legionella in Drinking and Recycled Water Systems
THE RISK TO HUMAN HEALTH FROM FREE-LIVING AMOEBAE INTERACTION WITH LEGIONELLA IN DRINKING AND RECYCLED WATER SYSTEMS Dissertation submitted by JACQUELINE MARIE THOMAS BACHELOR OF SCIENCE (HONOURS) AND BACHELOR OF ARTS, UNSW In partial fulfillment of the requirements for the award of DOCTOR OF PHILOSOPHY in ENVIRONMENTAL ENGINEERING SCHOOL OF CIVIL AND ENVIRONMENTAL ENGINEERING FACULTY OF ENGINEERING MAY 2012 SUPERVISORS Professor Nicholas Ashbolt Office of Research and Development United States Environmental Protection Agency Cincinnati, Ohio USA and School of Civil and Environmental Engineering Faculty of Engineering The University of New South Wales Sydney, Australia Professor Richard Stuetz School of Civil and Environmental Engineering Faculty of Engineering The University of New South Wales Sydney, Australia Doctor Torsten Thomas School of Biotechnology and Biomolecular Sciences Faculty of Science The University of New South Wales Sydney, Australia ORIGINALITY STATEMENT '1 hereby declare that this submission is my own work and to the best of my knowledge it contains no materials previously published or written by another person, or substantial proportions of material which have been accepted for the award of any other degree or diploma at UNSW or any other educational institution, except where due acknowledgement is made in the thesis. Any contribution made to the research by others, with whom 1 have worked at UNSW or elsewhere, is explicitly acknowledged in the thesis. I also declare that the intellectual content of this thesis is the product of my own work, except to the extent that assistance from others in the project's design and conception or in style, presentation and linguistic expression is acknowledged.' Signed ~ ............................ -
Bakterielle Diversität in Einer Wasserbehandlungsanlage Zur Reini- Gung Saurer Grubenwässer
Bakterielle Diversität in einer Wasserbehandlungsanlage zur Reini- gung saurer Grubenwässer E. Heinzel1, S. Hedrich1, G. Rätzel2, M. Wolf2, E. Janneck2, J. Seifert1, F. Glombitza2, M. Schlömann1 1AG Umweltmikrobiologie, IÖZ, TU Bergakademie Freiberg, Leipziger Str. 29, 09599 Freiberg, [email protected], 2Fa. G.E.O.S. Ingenieurgesellschaft mbH, Gewerbepark „Schwarze Kiefern“, 09633 Halsbrücke In einer Versuchsanlage zur Gewinnung von Eisenhydroxysulfaten durch biologische Oxidation von zweiwertigem Eisen wurde die Zusammensetzung der bakteriellen Lebensgemeinschaft mit moleku- largenetischen Methoden analysiert. Die 16S rDNA-Klonbank wurde von zwei Sequenztypen, denen 68 % der Klone zugeordnet werden konnten, dominiert. Ein Sequenztyp kann phylogenetisch in die Ordnung der Nitrosomonadales eingeordnet werden, zu deren Vertretern sowohl chemo-heterotrophe Bakterien als auch autotrophe Eisen und Ammonium oxidierende Bakterien gehören. Der zweite Se- quenztyp ist ähnlich zu „Ferrimicrobium acidiphilum“, einem heterotrophen Eisenoxidierer. The microbial community of a pilot plant for the production of iron hydroxysulfates by biological oxidation of ferrous iron was studied using molecular techniques. The 16S rDNA clone library was dominated by two sequence types, to which 68 % of all clones could be assigned. One sequence type is phylogenetically classified to the order of Nitrosomonadales. Both chemoheterotrophic bacteria and autotrophic iron or ammonium oxidizing bacteria belong to this order. The second sequence type is related to “Ferrimicrobium acidiphilum”, a heterotrophic iron oxidizing bacteria. 1 Einleitung und Projektziel die biologische Oxidationskapazität zu optimie- ren. Zur Gewährleistung einer konstanten Pro- Stark eisenhaltige und saure Bergbauwässer aus duktqualität muss die Oxidation sicher be- Tagebaufolgelandschaften bedingen einen erheb- herrscht und gesteuert werden können. Dies er- lichen Sanierungsaufwand. Die konventionelle fordert die Analyse der mikrobiellen Lebens- Reinigung dieser Wässer findet durch pH- gemeinschaft. -
Genetic and Functional Studies of the Mip Protein of Legionella
t1.ì. Genetic and Functional Studies of the Mip Protein of Legionella Rodney Mark Ratcliff, BSc (Hons)' MASM Infectious Diseases Laboratories Institute of Medical and Veterinary Science and Department of Microbiology and Immunology UniversitY of Adelaide. Adelaide, South Australia A thesis submitted to the University of Adelaide for the degree of I)octor of Philosophy 15'h March 2000 amended 14th June 2000 Colonies of several Legionella strains on charcoal yeast extract agar (CYE) after 4 days incubation at 37"C in air. Various magnifications show typical ground-glass opalescent appearance. Some pure strains exhibit pleomorphic growth or colour. The top two photographs demonstrate typical red (LH) and blue-white (RH) fluorescence exhibited by some species when illuminated by a Woods (IJV) Lamp. * t Table of Contents .1 Chapter One: Introduction .1 Background .............'. .2 Morphology and TaxonomY J Legionellosis ............. 5 Mode of transmission "..'....'. 7 Environmental habitat 8 Interactions between Legionella and phagocytic hosts 9 Attachment 11 Engulfment and internalisation.'.. 13 Intracellular processing 13 Intracellular replication of legionellae .. " "' " "' 15 Host cell death and bacterial release 18 Virulence (the Genetic factors involved with intracellular multiplication and host cell killing .20 icm/dot system) Legiolysin .25 Msp (Znn* metaloprotease) ...'..... .25 .28 Lipopolysaccharide .29 The association of flagella with disease.. .30 Type IV fimbriae.... .31 Major outer membrane proteins....'.......'. JJ Heat shock proteins'.'. .34 Macrophage infectivity potentiator (Mip) protein Virulenceiraits of Legionella species other than L. pneumophila..........' .39 phylogeny .41 Chapter One (continued): Introduction to bacterial classification and .41 Identificati on of Legionella...'.,..'.. .46 Phylogeny .52 Methods of phylogenetic analysis' .53 Parsimony methods.'.. .55 Distance methods UPGMA cluster analYsis.'.'... -
Electronic Laboratory Reporting Use Case January 2011
ILLINOIS HEALTH INFORMATION EXCHANGE Electronic Laboratory Reporting Use Case Electronic Laboratory Reporting and Health Information Exchange Illinois Health Information Exchange Public Health Work Group January 2011 Electronic Laboratory Reporting Use Case January 2011 Table of Contents 1.0 Executive Summary……………………………………………………………………….3 2.0 Introduction…………………………………………………………………...……………..5 3.0 Scope……………………………………..………………………………………………………5 4.0 Use Case Stakeholders…………………………………………………………….….....6 5.0 Issues and Obstacles……………………………………………………………………...8 6.0 Use Case Pre-Conditions .………………….…………………………………………...8 7.0 Use Case Post-Conditions.……………………………………………………………...9 8.0 Detailed Scenarios/Technical Specifications.………………………………10 9.0 Validation and Certification………………………………………………………...12 Appendix ………………………………………………………………………………………….....13 Page 2 Electronic Laboratory Reporting Use Case January 2011 1.0 Executive Summary This Use Case is a product of the Public Health Work Group (PHWG) of the Illinois Health Information Exchange (HIE) Advisory Committee. The Illinois HIE Advisory Committee was constituted as the diverse public healthcare stakeholder body providing input and recommendations on the creation of the Illinois Health Information Exchange Authority (“the Authority”) as the Illinois vehicle for designing and implementing electronic health information exchange in Illinois. The establishment of the Authority marks the formal transition of the work of the HIE Advisory Committee and the Work Groups into alignment with the provisions of Illinois -
Advances in Applied Microbiology, Voume 49 (Advances in Applied
ADVANCES IN Applied Microbiology VOLUME 49 ThisPageIntentionallyLeftBlank ADVANCES IN Applied Microbiology Edited by ALLEN I. LASKIN JOAN W. BENNETT Somerset, New Jersey New Orleans, Louisiana GEOFFREY M. GADD Dundee, United Kingdom VOLUME 49 San Diego New York Boston London Sydney Tokyo Toronto This book is printed on acid-free paper. ∞ Copyright C 2001 by ACADEMIC PRESS All Rights Reserved. No part of this publication may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopy, recording, or any information storage and retrieval system, without permission in writing from the Publisher. The appearance of the code at the bottom of the first page of a chapter in this book indicates the Publisher’s consent that copies of the chapter may be made for personal or internal use of specific clients. This consent is given on the condition, however, that the copier pay the stated per copy fee through the Copyright Clearance Center, Inc. (222 Rosewood Drive, Danvers, Massachusetts 01923), for copying beyond that permitted by Sections 107 or 108 of the U.S. Copyright Law. This consent does not extend to other kinds of copying, such as copying for general distribution, for advertising or promotional purposes, for creating new collective works, or for resale. Copy fees for pre-2000 chapters are as shown on the title pages. If no fee code appears on the title page, the copy fee is the same as for current chapters. 0065-2164/01 $35.00 Academic Press A division of Harcourt, Inc. 525 B Street, Suite 1900, San Diego, California 92101-4495, USA http://www.academicpress.com Academic Press Harcourt Place, 32 Jamestown Road, London NW1 7BY, UK http://www.academicpress.com International Standard Serial Number: 0065-2164 International Standard Book Number: 0-12-002649-X PRINTED IN THE UNITED STATES OF AMERICA 010203040506MM987654321 CONTENTS Microbial Transformations of Explosives SUSAN J. -
WO 2016/188962 Al 1 December 2016 (01.12.2016) P O P C T
(12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (10) International Publication Number (43) International Publication Date WO 2016/188962 Al 1 December 2016 (01.12.2016) P O P C T (51) International Patent Classification: (74) Agents: GOODFELLOW, Hugh Robin et al; Carpmaels C12Q 1/68 (2006.01) & Ransford LLP, One Southampton Row, London WC1B 5HA (GB). (21) International Application Number: PCT/EP2016/061599 (81) Designated States (unless otherwise indicated, for every kind of national protection available): AE, AG, AL, AM, (22) Date: International Filing AO, AT, AU, AZ, BA, BB, BG, BH, BN, BR, BW, BY, 23 May 20 16 (23.05.2016) BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DK, DM, (25) Filing Language: English DO, DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, HN, HR, HU, ID, IL, IN, IR, IS, JP, KE, KG, KN, KP, KR, (26) Publication Language: English KZ, LA, LC, LK, LR, LS, LU, LY, MA, MD, ME, MG, (30) Priority Data: MK, MN, MW, MX, MY, MZ, NA, NG, NI, NO, NZ, OM, 1508860.2 22 May 2015 (22.05.2015) GB PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, RW, SA, SC, SD, SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, (71) Applicant: NATIONAL UNIVERSITY OF IRELAND, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW. GALWAY [IE/IE]; University Road, Galway (IE). (84) Designated States (unless otherwise indicated, for every (72) Inventors: REDDINGTON, Kate Mary; Deerpack East, kind of regional protection available): ARIPO (BW, GH, Newport Road, Westport, Co.