Radiozoa (Acantharia, Phaeodaria and Radiolaria) and Heliozoa
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14. Radiolarians from Leg 134, Vanuatu Region, Southwestern Tropical Pacific1
Greene, H.G., Collot, J.-Y., Stokking, L.B., et al., 1994 Proceedings of the Ocean Drilling Program, Scientific Results, Vol. 134 14. RADIOLARIANS FROM LEG 134, VANUATU REGION, SOUTHWESTERN TROPICAL PACIFIC1 Amy L. Weinheimer,2 Annika Sanfilippo,2 and W.R. Riedel2 ABSTRACT In the cores obtained during Leg 134 of the Ocean Drilling Program, radiolarians occur intermittently and usually in a poor state of preservation, apparently as a result of the region having been at or near the boundary between the equatorial current system and the south-central Pacific water mass during most of the Cenozoic. A few well-preserved assemblages provide a record of the Quaternary forms, and some displaced middle and lower Eocene clasts preserve a record of radiolarians near that subepochal boundary. There are less satisfactory records of middle Miocene and early Miocene to late Oligocene forms. INTRODUCTION RADIOLARIANS AT EACH SITE The locations of Leg 134 drilling sites are indicated in Table 1. All Site 827 of the cores from these sites were examined for radiolarians, but this One or two samples were examined from each of the cores from microfossil group occurred so sparsely and intermittently (see Table Hole 827A. The only radiolarians observed were single, well-pre- 2) as to be much less useful for stratigraphic interpretations than were served specimens in Samples 134-827A-1H-2, 129-135 cm, 134- the calcareous groups. 827A-4H-CC, and 134-827A-10H-3,44-^6 cm. Rare sponge spicules Sufficient radiolarians occurred in the Quaternary sediments to occur in practically all of the samples. -
Molecular Phylogenetic Position of Hexacontium Pachydermum Jørgensen (Radiolaria)
Marine Micropaleontology 73 (2009) 129–134 Contents lists available at ScienceDirect Marine Micropaleontology journal homepage: www.elsevier.com/locate/marmicro Molecular phylogenetic position of Hexacontium pachydermum Jørgensen (Radiolaria) Tomoko Yuasa a,⁎, Jane K. Dolven b, Kjell R. Bjørklund b, Shigeki Mayama c, Osamu Takahashi a a Department of Astronomy and Earth Sciences, Tokyo Gakugei University, Koganei, Tokyo 184-8501, Japan b Natural History Museum, University of Oslo, P.O. Box 1172, Blindern, 0318 Oslo, Norway c Department of Biology, Tokyo Gakugei University, Koganei, Tokyo 184-8501, Japan article info abstract Article history: The taxonomic affiliation of Hexacontium pachydermum Jørgensen, specifically whether it belongs to the Received 9 April 2009 order Spumellarida or the order Entactinarida, is a subject of ongoing debate. In this study, we sequenced the Received in revised form 3 August 2009 18S rRNA gene of H. pachydermum and of three spherical spumellarians of Cladococcus viminalis Haeckel, Accepted 7 August 2009 Arachnosphaera myriacantha Haeckel, and Astrosphaera hexagonalis Haeckel. Our molecular phylogenetic analysis revealed that the spumellarian species of C. viminalis, A. myriacantha, and A. hexagonalis form a Keywords: monophyletic group. Moreover, this clade occupies a sister position to the clade comprising the spongodiscid Radiolaria fi Entactinarida spumellarians, coccodiscid spumellarians, and H. pachydermum. This nding is contrary to the results of Spumellarida morphological studies based on internal spicular morphology, placing H. pachydermum in the order Nassellarida Entactinarida, which had been considered to have a common ancestor shared with the nassellarians. 18S rRNA gene © 2009 Elsevier B.V. All rights reserved. Molecular phylogeny. 1. Introduction the order Entactinarida has an inner spicular system homologenous with that of the order Nassellarida. -
Optics-Based Surveys of Large Unicellular Zooplankton: a Case Study on Radiolarians and Phaeodarians
Plankton Benthos Res 12(2): 95–103, 2017 Plankton & Benthos Research © The Plankton Society of Japan Optics-based surveys of large unicellular zooplankton: a case study on radiolarians and phaeodarians 1, 2 3 4,5 YASUHIDE NAKAMURA *, REI SOMIYA , NORITOSHI SUZUKI , MITSUKO HIDAKA-UMETSU , 6 4,5 ATSUSHI YAMAGUCHI & DHUGAL J. LINDSAY 1 Department of Botany, National Museum of Nature and Science, Tsukuba 305–0005, Japan 2 Graduate School of Fisheries and Environmental Sciences, Nagasaki University, Nagasaki 852–8521, Japan 3 Department of Earth Science, Graduate School of Science, Tohoku University, Sendai 980–8578, Japan 4 Research and Development (R&D) Center for Submarine Resources, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka 237–0061, Japan 5 School of Marine Biosciences, Kitasato University, Sagamihara 252–0373, Japan 6 Graduate School of Fisheries Sciences, Hokkaido University, Hakodate 041–8611, Japan Received 24 May 2016; Accepted 6 February 2017 Responsible Editor: Akihiro Tuji Abstract: Optics-based surveys for large unicellular zooplankton were carried out in five different oceanic areas. New identification criteria, in which “radiolarian-like plankton” are categorized into nine different groups, are proposed for future optics-based surveys. The autonomous visual plankton recorder (A-VPR) captured 65 images of radiolarians (three orders: Acantharia, Spumellaria and Collodaria) and 117 phaeodarians (four taxa: Aulacanthidae, Phaeosphaeri- da, Tuscaroridae and Coelodendridae). Colonies were observed for one radiolarian order (Collodaria) and three phae- odarian taxa (Phaeosphaerida, Tuscaroridae and Coelodendridae). The rest of the radiolarian orders (Taxopodia and Nassellaria) and the other phaeodarian taxa were not detected because of their small cell size (< ca. -
First Application of PDMPO to Examine Silicification in Polycystine Radiolaria
Plankton Benthos Res 4(3): 89–94, 2009 Plankton & Benthos Research © The Plankton Society of Japan First application of PDMPO to examine silicification in polycystine Radiolaria KAORU OGANE1,*, AKIHIRO TUJI2, NORITOSHI SUZUKI1, TOSHIYUKI KURIHARA3 & ATSUSHI MATSUOKA4 1 Institute of Geology and Paleontology, Graduate School of Science, Tohoku University, Sendai, 980–8578, Japan 2 Department of Botany, National Museum of Nature and Science, Tsukuba, 305–0005, Japan 3 Graduate School of Science and Technology, Niigata University, Niigata 950–2181, Japan 4 Department of Geology, Faculty of Science, Niigata University, Niigata 950–2181, Japan Received 4 February 2009; Accepted 10 April 2009 Abstract: 2-(4-pyridyl)-5-[(4-(2-dimethylaminoethylaminocarbamoyl)methoxy)-phenyl] oxazole (PDMPO) is a fluo- rescent compound that accumulates in acidic cell compartments. PDMPO is accumulated with silica under acidic con- ditions, and the newly developed silica skeletons show green fluorescent light. This study is the first to use PDMPO in polycystine radiolarians, which are unicellular planktonic protists. We tested Acanthodesmia sp., Rhizosphaera trigo- nacantha, and Spirocyrtis scalaris for emission of green fluorescence. Entire skeletons of Acanthodesmia sp. and Sr. scalaris emitted green fluorescent light, whereas only the outermost shell and radial spines of Rz. trigonacantha showed fluorescence. Two additional species, Spongaster tetras tetras and Rhopalastrum elegans did not show fluorescence. Green fluorescence of the entire skeleton is more like the “skeletal thickening growth” defined by silica deposition throughout the surface of the existing skeleton. The brightness of the fluorescence varied with each cell. This difference in fluorescence may reflect the rate of growth in these cells. Green fluorescence in PDMPO-treated polycystines sug- gests the presence of similar metabolic systems with controlled pH. -
Rhizaria, Cercozoa)
Protist, Vol. 166, 363–373, July 2015 http://www.elsevier.de/protis Published online date 28 May 2015 ORIGINAL PAPER Molecular Phylogeny of the Widely Distributed Marine Protists, Phaeodaria (Rhizaria, Cercozoa) a,1 a a b Yasuhide Nakamura , Ichiro Imai , Atsushi Yamaguchi , Akihiro Tuji , c d Fabrice Not , and Noritoshi Suzuki a Plankton Laboratory, Graduate School of Fisheries Sciences, Hokkaido University, Hakodate, Hokkaido 041–8611, Japan b Department of Botany, National Museum of Nature and Science, Tsukuba 305–0005, Japan c CNRS, UMR 7144 & Université Pierre et Marie Curie, Station Biologique de Roscoff, Equipe EPPO - Evolution du Plancton et PaléoOcéans, Place Georges Teissier, 29682 Roscoff, France d Institute of Geology and Paleontology, Graduate School of Science, Tohoku University, Sendai 980–8578, Japan Submitted January 1, 2015; Accepted May 19, 2015 Monitoring Editor: David Moreira Phaeodarians are a group of widely distributed marine cercozoans. These plankton organisms can exhibit a large biomass in the environment and are supposed to play an important role in marine ecosystems and in material cycles in the ocean. Accurate knowledge of phaeodarian classification is thus necessary to better understand marine biology, however, phylogenetic information on Phaeodaria is limited. The present study analyzed 18S rDNA sequences encompassing all existing phaeodarian orders, to clarify their phylogenetic relationships and improve their taxonomic classification. The mono- phyly of Phaeodaria was confirmed and strongly supported by phylogenetic analysis with a larger data set than in previous studies. The phaeodarian clade contained 11 subclades which generally did not correspond to the families and orders of the current classification system. Two families (Challengeri- idae and Aulosphaeridae) and two orders (Phaeogromida and Phaeocalpida) are possibly polyphyletic or paraphyletic, and consequently the classification needs to be revised at both the family and order levels by integrative taxonomy approaches. -
An Evaluated List of Cenozic-Recent Radiolarian Species Names (Polycystinea), Based on Those Used in the DSDP, ODP and IODP Deep-Sea Drilling Programs
Zootaxa 3999 (3): 301–333 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2015 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3999.3.1 http://zoobank.org/urn:lsid:zoobank.org:pub:69B048D3-7189-4DC0-80C0-983565F41C83 An evaluated list of Cenozic-Recent radiolarian species names (Polycystinea), based on those used in the DSDP, ODP and IODP deep-sea drilling programs DAVID LAZARUS1, NORITOSHI SUZUKI2, JEAN-PIERRE CAULET3, CATHERINE NIGRINI4†, IRINA GOLL5, ROBERT GOLL5, JANE K. DOLVEN6, PATRICK DIVER7 & ANNIKA SANFILIPPO8 1Museum für Naturkunde, Invalidenstrasse 43, 10115 Berlin, Germany. E-mail: [email protected] 2Institute of Geology and Paleontology, Tohoku University, Sendai 980-8578 Japan. E-mail: [email protected] 3242 rue de la Fure, Charavines, 38850 France. E-mail: [email protected] 4deceased 5Natural Science Dept, Blinn College, 2423 Blinn Blvd, Bryan, Texas 77805, USA. E-mail: [email protected] 6Minnehallveien 27b, 3290 Stavern, Norway. E-mail: [email protected] 7Divdat Consulting, 1392 Madison 6200, Wesley, Arkansas 72773, USA. E-mail: [email protected] 8Scripps Institution of Oceanography, University of California San Diego, La Jolla, California 92093, USA. E-mail: [email protected] Abstract A first reasonably comprehensive evaluated list of radiolarian names in current use is presented, covering Cenozoic fossil to Recent species of the primary fossilising subgroup Polycystinea. It is based on those species names that have appeared in the literature of the Deep Sea Drilling Project and its successor programs, the Ocean Drilling Program and Integrated Ocean Drilling Program, plus additional information from the published literature, and several unpublished taxonomic da- tabase projects. -
September 2002
RADI LARIA VOLUME 20 SEPTEMBER 2002 NEWSLETTER OF THE INTERNATIONAL ASSOCIATION OF RADIOLARIAN PALEONTOLOGISTS ISSN: 0297.5270 INTERRAD International Association of Radiolarian Paleontologists A Research Group of the International Paleontological Association Officers of the Association President Past President PETER BAUMBARTNER JOYCE R. BLUEFORD Lausanne, Switzerland California, USA [email protected] [email protected] Secretary Treasurer JONATHAN AITCHISON ELSPETH URQUHART Department of Earth Sciences JOIDES Office University of Hong Kong Department of Geology and Geophysics Pokfulam Road, University of Miami - RSMAS Hong Kong SAR, 4600 Rickenbacker Causeway CHINA Miami FL 33149 Florida Tel: (852) 2859 8047 Fax: (852) 2517 6912 U.S.A. e-mail: [email protected] Tel: 1-305-361-4668 Fax: 1-305-361-4632 Email: [email protected] Working Group Chairmen Paleozoic Cenozoic PATRICIA, WHALEN, U.S.A. ANNIKA SANFILIPPO California, U.S.A. [email protected] [email protected] Mesozoic Recent RIE S. HORI Matsuyama, JAPAN DEMETRIO BOLTOVSKOY Buenos Aires, ARGENTINA [email protected] [email protected] INTERRAD is an international non-profit organization for researchers interested in all aspects of radiolarian taxonomy, palaeobiology, morphology, biostratigraphy, biology, ecology and paleoecology. INTERRAD is a Research Group of the International Paleontological Association (IPA). Since 1978 members of INTERRAD meet every three years to present papers and exchange ideas and materials INTERRAD MEMBERSHIP: The international Association of Radiolarian Paleontologists is open to any one interested on receipt of subscription. The actual fee US $ 15 per year. Membership queries and subscription send to Treasurer. Changes of address can be sent to the Secretary. -
Protist Phylogeny and the High-Level Classification of Protozoa
Europ. J. Protistol. 39, 338–348 (2003) © Urban & Fischer Verlag http://www.urbanfischer.de/journals/ejp Protist phylogeny and the high-level classification of Protozoa Thomas Cavalier-Smith Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK; E-mail: [email protected] Received 1 September 2003; 29 September 2003. Accepted: 29 September 2003 Protist large-scale phylogeny is briefly reviewed and a revised higher classification of the kingdom Pro- tozoa into 11 phyla presented. Complementary gene fusions reveal a fundamental bifurcation among eu- karyotes between two major clades: the ancestrally uniciliate (often unicentriolar) unikonts and the an- cestrally biciliate bikonts, which undergo ciliary transformation by converting a younger anterior cilium into a dissimilar older posterior cilium. Unikonts comprise the ancestrally unikont protozoan phylum Amoebozoa and the opisthokonts (kingdom Animalia, phylum Choanozoa, their sisters or ancestors; and kingdom Fungi). They share a derived triple-gene fusion, absent from bikonts. Bikonts contrastingly share a derived gene fusion between dihydrofolate reductase and thymidylate synthase and include plants and all other protists, comprising the protozoan infrakingdoms Rhizaria [phyla Cercozoa and Re- taria (Radiozoa, Foraminifera)] and Excavata (phyla Loukozoa, Metamonada, Euglenozoa, Percolozoa), plus the kingdom Plantae [Viridaeplantae, Rhodophyta (sisters); Glaucophyta], the chromalveolate clade, and the protozoan phylum Apusozoa (Thecomonadea, Diphylleida). Chromalveolates comprise kingdom Chromista (Cryptista, Heterokonta, Haptophyta) and the protozoan infrakingdom Alveolata [phyla Cilio- phora and Miozoa (= Protalveolata, Dinozoa, Apicomplexa)], which diverged from a common ancestor that enslaved a red alga and evolved novel plastid protein-targeting machinery via the host rough ER and the enslaved algal plasma membrane (periplastid membrane). -
The Distribution of Recent Radiolaria in Surficial Sediments of the Continental Margin Off Northern Namibia
J.rnicropalaeontol.,2: 31 - 38, July 1983 The distribution of Recent Radiolaria in surficial sediments of the continental margin off northern Namibia SIMON ROBSON Marine Geoscience Unit, University of Cape Town, Rondebosch, Cape 'Town 7700, Republic of South Africa ABSTRACT-47 Species of radiolaria have been identified from 30 surface sediment samples collected along transects across the continental margin of northern Namibia between the Kunene River and Walvis Bay. From the distribution patterns of the 24 most abundant species, it was possible to identify a warm water, high salinity population and a cold water, low salinity population. The distribution patterns of each population shows a close correspondence with the known positions of the Angola Current (warm, high salinity water) and the Benguela Current (cold, low salinity water) respectively. Two other trends are apparent from the overall radiolaria distribution ; dilution of the nearshore samples by terrigeneous input and a strong preference for open ocean conditions. There is no apparent correlation with upwelling. REGIONAL SETTING The continental margin of Namibia is a region of Entering the margin from the north is the warm water strong oceanic upwelling (Hart & Currie, 1960; Bremner, ( 16-1 8" C), high salinity (35.3O,100), oxygen poor 1981 and others) and it is situated off an extremely arid (3 mlil) Angola Current. This current reaches a maxi- coastline from which there is low terrigerieous input mum velocity of more than 70cms~sec.off Angola (Bremner, 1976). The northern margin of Namibia has although on the Kunene Margin its flow rate is reduced been subdivided by Bremner (1981) into the Kunene to 5-8 cmsisec. -
Order Spumellaria Family Collosphaeridae
Order Spumellaria Family Collosphaeridae Acrosphaera murrayana (Haeckel) (Figure 15.19) [=Polysolenia murrayana]. Large pores, each surrounded by a crown of short spines. Shell diameter: 70-180 µm. Ref: Strelkov and Reshetnjak (1971), Nigrini and Moore (1979). Acrosphaera spinosa (Haeckel) group? (Figure 1D, 15.18) [=Polysolenia spinosa, ?P. lappacea, ?P. flammabunda]. Irregular pores and many irregularly arranged spines scattered about the surface, some of the latter extending from the pore-rims. Spine and pore patterns are variable. Shell diameter: 60-160 µm. Ref: Strelkov and Reshetnjak (1971), Boltovskoy and Riedel (1980). Buccinosphaera invaginata Haeckel (Figure 15.17) [=Collosphaera imvaginata]. The smooth shell produces several pored tubes directed toward the center of the sphere. Rather small, irregular pores. Shell diameter: 100-130 µm. Ref: Strelkov and Reshetnjak (1971), Nigrini (1971). 35 Collosphaera huxleyi Müller (Figure 1E, 15.13). Shells with small to medium-sized pores scattered about the surface only; no spines or tubes. Shell diameter: 80-150 µm. Ref: Strelkov and Reshetnjak (1971), Boltovskoy and Riedel (1980). Collosphaera macropora Popofsky (Figure 15.15). No spines or tubes on shell surface; few very large pores, sometimes angular. Shell diameter: 100-120 µm. Ref: Strelkov and Reshetnjak (1971), Boltovskoy and Riedel (1980). Collosphaera tuberosa Haeckel (Figure 15.14). No spines or tubes on shell surface, but with conspicuous lumps and depressions; many small, irregularly shaped pores. Shell diameter: 50-300 µm. Ref: Strelkov and Reshetnjak (1971), Boltovskoy and Riedel (1980). Siphonosphaera martensi Brandt (Figure 15.20). Each pore bears a short centrifugal tube, tube walls are imperforate. Shell diameter: 90-100 µm. Ref: Strelkov and Reshetnjak (1971). -
Letter to the Editor
Letter to the Editor Toward the Monophyly of Haeckel's Radiolaria: 18S rRNA Environmental Data Support the Sisterhood of Polycystinea and Acantharea Puri®cacioÂn LoÂpez-GarcõÂa,*² Francisco RodrõÂguez-Valera,² and David Moreira* *Universite Pierre et Marie Curie, Paris and ²DivisioÂn de MicrobiologõÂa, Universidad Miguel HernaÂndez, San Juan de Alicante, Spain subsequently constructed a cosmid genomic library of the 0.2- to 5-mm biomass fraction from 500-m-deep wa- In 1887, Ernst Haeckel published a monumental ters at the same location (598199S, 558459W). The con- and amazingly illustrated monograph describing several struction of the environmental genomic libraries has a thousand different radiolarian species, which had been number of advantages over a direct PCR ampli®cation collected during the 4-year journey (1872±1876) of the of a target gene. First, the diversity retrieved is not af- British oceanographic corvette H.M.S. Challenger fected by well-known PCR-related biases. Second, these (Haeckel 1887). Radiolaria consist of diverse marine kinds of libraries offer the possibility of retrieving other planktonic protists, mostly unicellular, usually endowed gene sequences, in addition to the 18S rRNA, from the with complex, conspicuous mineral skeletons. Haeckel same genomic fragment. applied the term Radiolaria to three different groups: Our environmental genomic library was construct- Acantharea, Polycystinea (Spumellaria and Nassellaria), ed using 3.5 mg of DNA. DNA was mechanically bro- and Phaeodarea. All of them are united by the posses- ken by intense shearing and fractionated in a 0.8% low sion of a central capsule de®ning an intracapsular and melting point agarose gel. The band corresponding to an extracapsular region in the cytoplasm, and some of 35±45 kb DNA fragments was cut off and digested with them, (all Acantharea and several Spumellaria), also by gelase. -
Seasonal and Spatial Variability of Planktonic Heliozoa in Lake Constance
I AQUATIC MICROBIAL ECOLOGY I Vol. 11: 21-29, 1996 Published August 29 Aquat Microb Ecol I i I Seasonal and spatial variability of planktonic heliozoa in Lake Constance Uwe Zimmermann*, Helga Miiller**,Thomas Weisse*** Lirnnological Institute, University of Konstanz, PO Box 5560, D-78434 Konstanz, Germany ABSTRACT: Planktonic heliozoa were investigated at a mid-lake and an inshore station in Lake Constance (Germany)from April to November 1993. Integrated water samples were taken over 0 to 8 m and 8 to 20 m depth intervals at the deep mid-lake station and over 0 to 2 m depth at the shallow inshore station. Heliozoans were counted and identified to genus level in live samples. The following genera were identified: Actinophrys, Raphidocystis, Heterophrys, Chlarnydaster, Choanocystis, Raphidiophrys, and Pterocystis. Small heliozoans (10 to 20 pm, mainly Heterophrys and Choanocystis) generally dominated the con~n~unityin terms of abundance. Large genera (Actinophrys, Raphidocystis) were, however, the major contributors to total biovolume. Total cell concentrations remained below detection limits from April to mid-June. Maxima of up to 6.6 ind. ml-' were observed in summer; smaller peaks occurred in autumn. Heliozoan cell numbers were significantly positively correlated wth chlorophyll a concentration close to the surface. Negative trends were found in relation to potential heliozoan competitors or predators such as rotifers and crustacea. Community biovolumes of up to 60 mm3 m-3 were recorded in mid-summer The seasonal succession of the dominant genera was sirni- lar at both stations. The vertical distribution of heliozoans, examined on 2 occasions in summer and autumn, was positively correlated with chlorophyll a and temperature.