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Molecular Phylogenetic Position of Hexacontium Pachydermum Jørgensen (Radiolaria)
Marine Micropaleontology 73 (2009) 129–134 Contents lists available at ScienceDirect Marine Micropaleontology journal homepage: www.elsevier.com/locate/marmicro Molecular phylogenetic position of Hexacontium pachydermum Jørgensen (Radiolaria) Tomoko Yuasa a,⁎, Jane K. Dolven b, Kjell R. Bjørklund b, Shigeki Mayama c, Osamu Takahashi a a Department of Astronomy and Earth Sciences, Tokyo Gakugei University, Koganei, Tokyo 184-8501, Japan b Natural History Museum, University of Oslo, P.O. Box 1172, Blindern, 0318 Oslo, Norway c Department of Biology, Tokyo Gakugei University, Koganei, Tokyo 184-8501, Japan article info abstract Article history: The taxonomic affiliation of Hexacontium pachydermum Jørgensen, specifically whether it belongs to the Received 9 April 2009 order Spumellarida or the order Entactinarida, is a subject of ongoing debate. In this study, we sequenced the Received in revised form 3 August 2009 18S rRNA gene of H. pachydermum and of three spherical spumellarians of Cladococcus viminalis Haeckel, Accepted 7 August 2009 Arachnosphaera myriacantha Haeckel, and Astrosphaera hexagonalis Haeckel. Our molecular phylogenetic analysis revealed that the spumellarian species of C. viminalis, A. myriacantha, and A. hexagonalis form a Keywords: monophyletic group. Moreover, this clade occupies a sister position to the clade comprising the spongodiscid Radiolaria fi Entactinarida spumellarians, coccodiscid spumellarians, and H. pachydermum. This nding is contrary to the results of Spumellarida morphological studies based on internal spicular morphology, placing H. pachydermum in the order Nassellarida Entactinarida, which had been considered to have a common ancestor shared with the nassellarians. 18S rRNA gene © 2009 Elsevier B.V. All rights reserved. Molecular phylogeny. 1. Introduction the order Entactinarida has an inner spicular system homologenous with that of the order Nassellarida. -
Rhizaria, Cercozoa)
Protist, Vol. 166, 363–373, July 2015 http://www.elsevier.de/protis Published online date 28 May 2015 ORIGINAL PAPER Molecular Phylogeny of the Widely Distributed Marine Protists, Phaeodaria (Rhizaria, Cercozoa) a,1 a a b Yasuhide Nakamura , Ichiro Imai , Atsushi Yamaguchi , Akihiro Tuji , c d Fabrice Not , and Noritoshi Suzuki a Plankton Laboratory, Graduate School of Fisheries Sciences, Hokkaido University, Hakodate, Hokkaido 041–8611, Japan b Department of Botany, National Museum of Nature and Science, Tsukuba 305–0005, Japan c CNRS, UMR 7144 & Université Pierre et Marie Curie, Station Biologique de Roscoff, Equipe EPPO - Evolution du Plancton et PaléoOcéans, Place Georges Teissier, 29682 Roscoff, France d Institute of Geology and Paleontology, Graduate School of Science, Tohoku University, Sendai 980–8578, Japan Submitted January 1, 2015; Accepted May 19, 2015 Monitoring Editor: David Moreira Phaeodarians are a group of widely distributed marine cercozoans. These plankton organisms can exhibit a large biomass in the environment and are supposed to play an important role in marine ecosystems and in material cycles in the ocean. Accurate knowledge of phaeodarian classification is thus necessary to better understand marine biology, however, phylogenetic information on Phaeodaria is limited. The present study analyzed 18S rDNA sequences encompassing all existing phaeodarian orders, to clarify their phylogenetic relationships and improve their taxonomic classification. The mono- phyly of Phaeodaria was confirmed and strongly supported by phylogenetic analysis with a larger data set than in previous studies. The phaeodarian clade contained 11 subclades which generally did not correspond to the families and orders of the current classification system. Two families (Challengeri- idae and Aulosphaeridae) and two orders (Phaeogromida and Phaeocalpida) are possibly polyphyletic or paraphyletic, and consequently the classification needs to be revised at both the family and order levels by integrative taxonomy approaches. -
Radiozoa (Acantharia, Phaeodaria and Radiolaria) and Heliozoa
MICC16 26/09/2005 12:21 PM Page 188 CHAPTER 16 Radiozoa (Acantharia, Phaeodaria and Radiolaria) and Heliozoa Cavalier-Smith (1987) created the phylum Radiozoa to Radiating outwards from the central capsule are the include the marine zooplankton Acantharia, Phaeodaria pseudopodia, either as thread-like filopodia or as and Radiolaria, united by the presence of a central axopodia, which have a central rod of fibres for rigid- capsule. Only the Radiolaria including the siliceous ity. The ectoplasm typically contains a zone of frothy, Polycystina (which includes the orders Spumellaria gelatinous bubbles, collectively termed the calymma and Nassellaria) and the mixed silica–organic matter and a swarm of yellow symbiotic algae called zooxan- Phaeodaria are preserved in the fossil record. The thellae. The calymma in some spumellarian Radiolaria Acantharia have a skeleton of strontium sulphate can be so extensive as to obscure the skeleton. (i.e. celestine SrSO4). The radiolarians range from the A mineralized skeleton is usually present within the Cambrian and have a virtually global, geographical cell and comprises, in the simplest forms, either radial distribution and a depth range from the photic zone or tangential elements, or both. The radial elements down to the abyssal plains. Radiolarians are most useful consist of loose spicules, external spines or internal for biostratigraphy of Mesozoic and Cenozoic deep sea bars. They may be hollow or solid and serve mainly to sediments and as palaeo-oceanographical indicators. support the axopodia. The tangential elements, where Heliozoa are free-floating protists with roughly present, generally form a porous lattice shell of very spherical shells and thread-like pseudopodia that variable morphology, such as spheres, spindles and extend radially over a delicate silica endoskeleton. -
The Distribution of Recent Radiolaria in Surficial Sediments of the Continental Margin Off Northern Namibia
J.rnicropalaeontol.,2: 31 - 38, July 1983 The distribution of Recent Radiolaria in surficial sediments of the continental margin off northern Namibia SIMON ROBSON Marine Geoscience Unit, University of Cape Town, Rondebosch, Cape 'Town 7700, Republic of South Africa ABSTRACT-47 Species of radiolaria have been identified from 30 surface sediment samples collected along transects across the continental margin of northern Namibia between the Kunene River and Walvis Bay. From the distribution patterns of the 24 most abundant species, it was possible to identify a warm water, high salinity population and a cold water, low salinity population. The distribution patterns of each population shows a close correspondence with the known positions of the Angola Current (warm, high salinity water) and the Benguela Current (cold, low salinity water) respectively. Two other trends are apparent from the overall radiolaria distribution ; dilution of the nearshore samples by terrigeneous input and a strong preference for open ocean conditions. There is no apparent correlation with upwelling. REGIONAL SETTING The continental margin of Namibia is a region of Entering the margin from the north is the warm water strong oceanic upwelling (Hart & Currie, 1960; Bremner, ( 16-1 8" C), high salinity (35.3O,100), oxygen poor 1981 and others) and it is situated off an extremely arid (3 mlil) Angola Current. This current reaches a maxi- coastline from which there is low terrigerieous input mum velocity of more than 70cms~sec.off Angola (Bremner, 1976). The northern margin of Namibia has although on the Kunene Margin its flow rate is reduced been subdivided by Bremner (1981) into the Kunene to 5-8 cmsisec. -
Tsunami-Generated Rafting of Foraminifera Across the North Pacific Ocean
Aquatic Invasions (2018) Volume 13, Issue 1: 17–30 DOI: https://doi.org/10.3391/ai.2018.13.1.03 © 2018 The Author(s). Journal compilation © 2018 REABIC Special Issue: Transoceanic Dispersal of Marine Life from Japan to North America and the Hawaiian Islands as a Result of the Japanese Earthquake and Tsunami of 2011 Research Article Tsunami-generated rafting of foraminifera across the North Pacific Ocean Kenneth L. Finger University of California Museum of Paleontology, Valley Life Sciences Building – 1101, Berkeley, CA 94720-4780, USA E-mail: [email protected] Received: 9 February 2017 / Accepted: 12 December 2017 / Published online: 15 February 2018 Handling editor: James T. Carlton Co-Editors’ Note: This is one of the papers from the special issue of Aquatic Invasions on “Transoceanic Dispersal of Marine Life from Japan to North America and the Hawaiian Islands as a Result of the Japanese Earthquake and Tsunami of 2011." The special issue was supported by funding provided by the Ministry of the Environment (MOE) of the Government of Japan through the North Pacific Marine Science Organization (PICES). Abstract This is the first report of long-distance transoceanic dispersal of coastal, shallow-water benthic foraminifera by ocean rafting, documenting survival and reproduction for up to four years. Fouling was sampled on rafted items (set adrift by the Tohoku tsunami that struck northeastern Honshu in March 2011) landing in North America and the Hawaiian Islands. Seventeen species of shallow-water benthic foraminifera were recovered from these debris objects. Eleven species are regarded as having been acquired in Japan, while two additional species (Planogypsina squamiformis (Chapman, 1901) and Homotrema rubra (Lamarck, 1816)) were obtained in the Indo-Pacific as those objects drifted into shallow tropical waters before turning north and east to North America. -
Phylogenomics Supports the Monophyly of the Cercozoa T ⁎ Nicholas A.T
Molecular Phylogenetics and Evolution 130 (2019) 416–423 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Phylogenomics supports the monophyly of the Cercozoa T ⁎ Nicholas A.T. Irwina, , Denis V. Tikhonenkova,b, Elisabeth Hehenbergera,1, Alexander P. Mylnikovb, Fabien Burkia,2, Patrick J. Keelinga a Department of Botany, University of British Columbia, Vancouver V6T 1Z4, British Columbia, Canada b Institute for Biology of Inland Waters, Russian Academy of Sciences, Borok 152742, Russia ARTICLE INFO ABSTRACT Keywords: The phylum Cercozoa consists of a diverse assemblage of amoeboid and flagellated protists that forms a major Cercozoa component of the supergroup, Rhizaria. However, despite its size and ubiquity, the phylogeny of the Cercozoa Rhizaria remains unclear as morphological variability between cercozoan species and ambiguity in molecular analyses, Phylogeny including phylogenomic approaches, have produced ambiguous results and raised doubts about the monophyly Phylogenomics of the group. Here we sought to resolve these ambiguities using a 161-gene phylogenetic dataset with data from Single-cell transcriptomics newly available genomes and deeply sequenced transcriptomes, including three new transcriptomes from Aurigamonas solis, Abollifer prolabens, and a novel species, Lapot gusevi n. gen. n. sp. Our phylogenomic analysis strongly supported a monophyletic Cercozoa, and approximately-unbiased tests rejected the paraphyletic topologies observed in previous studies. The transcriptome of L. gusevi represents the first transcriptomic data from the large and recently characterized Aquavolonidae-Treumulida-'Novel Clade 12′ group, and phyloge- nomics supported its position as sister to the cercozoan subphylum, Endomyxa. These results provide insights into the phylogeny of the Cercozoa and the Rhizaria as a whole. -
Northeast Atlantic Late Quaternary Planktic Foraminifera As Primary Productivity and Water Mass Indicators
Northeast Atlantic Late Quaternary planktic Foraminifera as primary productivity and water mass indicators Shirley A. van Kreveld Kreveld, S.A. van. Northeast Atlantic Late Quaternary planktic Foraminifera as primary productivity and water mass indicators. — Scripta Geol., 113: 23-91, 18 figs., 12 pls, Leiden, December 1996. S.A. van Kreveld, Center for Marine Earth Sciences, Institute of Earth Sciences, Free University, De Boelelaan 1085, 1081 HV Amsterdam, The Netherlands. Keywords: Planktic Foraminifera, palaeo primary productivity, water mass, Northeast Atlantic. Primary productivity and water mass reconstructions based on planktic Foraminifera reveal distinct interglacial/glacial variations for the past 208 ka in a mid-latitude Northeast Atlantic piston core. Average total planktic foraminiferal absolute frequencies and accumulation rates, which are interpret- ed to reflect primary productivity, are higher in interglacial than in glacial sediments. Low total planktic foraminiferal absolute frequencies and accumulation rates in 'Heinrich layers' are likewise interpreted to show low production of Foraminifera due to low surface ocean fertility. 'Heinrich layers' are enriched in ice-rafted debris, recording periods of massive iceberg production and rapid melting in the Northeast Atlantic. The dominance of Neogloboquadrina pachyderma (sinistral) in these layers reflects an extension of cold low salinity polar waters. The fresh water along with tur- bidity caused by melting icebergs may account for the low productivity during these events. In contrast, the dominance of Globigerina bulloides, Neogloboquadrina incompta, Globorotalia scitula, Globi- gerinita glutinata, and Globorotalia inflata group in interglacial sediments is interpreted to reflect condi- tions comparable with the present day North Atlantic Current (NAC) waters in the area. In the mod- ern ocean, the Gulf Stream and its extension, the NAC, are driven by seasonally strong westerly winds which induce mixing, supplying nutrients from deep to surface waters. -
Author's Manuscript (764.7Kb)
1 BROADLY SAMPLED TREE OF EUKARYOTIC LIFE Broadly Sampled Multigene Analyses Yield a Well-resolved Eukaryotic Tree of Life Laura Wegener Parfrey1†, Jessica Grant2†, Yonas I. Tekle2,6, Erica Lasek-Nesselquist3,4, Hilary G. Morrison3, Mitchell L. Sogin3, David J. Patterson5, Laura A. Katz1,2,* 1Program in Organismic and Evolutionary Biology, University of Massachusetts, 611 North Pleasant Street, Amherst, Massachusetts 01003, USA 2Department of Biological Sciences, Smith College, 44 College Lane, Northampton, Massachusetts 01063, USA 3Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, 7 MBL Street, Woods Hole, Massachusetts 02543, USA 4Department of Ecology and Evolutionary Biology, Brown University, 80 Waterman Street, Providence, Rhode Island 02912, USA 5Biodiversity Informatics Group, Marine Biological Laboratory, 7 MBL Street, Woods Hole, Massachusetts 02543, USA 6Current address: Department of Epidemiology and Public Health, Yale University School of Medicine, New Haven, Connecticut 06520, USA †These authors contributed equally *Corresponding author: L.A.K - [email protected] Phone: 413-585-3825, Fax: 413-585-3786 Keywords: Microbial eukaryotes, supergroups, taxon sampling, Rhizaria, systematic error, Excavata 2 An accurate reconstruction of the eukaryotic tree of life is essential to identify the innovations underlying the diversity of microbial and macroscopic (e.g. plants and animals) eukaryotes. Previous work has divided eukaryotic diversity into a small number of high-level ‘supergroups’, many of which receive strong support in phylogenomic analyses. However, the abundance of data in phylogenomic analyses can lead to highly supported but incorrect relationships due to systematic phylogenetic error. Further, the paucity of major eukaryotic lineages (19 or fewer) included in these genomic studies may exaggerate systematic error and reduces power to evaluate hypotheses. -
Ecology of Foraminifera in Northeastern Gulf of Mexico
Ecology of Foraminifera in Northeastern Gulf of Mexico GEOLOGICAL SURVEY PROFESSIONAL PAPER 274-G This report concerns work done partly on behalf of the U. S. Atomic Energy Commission and is published with the permission of the Commission Errata: Prof. Paper 27^-G, Ecology of Foraminifera in northeastern Gulf of Mexico. p. 185, 20^4- - Quinqueloculina agglutinata should be Quinqueloculina agglutinans. p. 186 } 20^4- - Textularia barrettii shouild "be Textulariella barrettii. Ecology of Foraminifera in Northeastern Gulf of Mexico By ORVILLE L. BANDY A SHORTER CONTRIBUTION TO GENERAL GEOLOGY GEOLOGICAL SURVEY PROFESSIONAL PAPER 274-G Frequency distribution oj Recent Foraminifera in the coastal waters of western Florida. This report concerns work done partly on behalf of the U. S. Atomic Energy Commission and is published with the permission of the Commission UNITED STATES GOVERNMENT PRINTING OFFICE, WASHINGTON : 1956 UNITED STATES DEPARTMENT OF THE INTERIOR Fred A. Seaton, Secretary GEOLOGICAL SURVEY Thomas B. Nolan, Director For sale by the Superintendent of Documents, U. S. Government Printing Office Washington 25, D. C. CONTENTS Page Page Abstract_________________________________________ 179 Faunal zonation—Continued Introduction______________________________________ 179 Offshore faunal zones—Continued Previous work___--_______-___-____.-_------____-___ 180 Fauna 5 (251-600 feet)_____---_---_ —------- 186 Method of study.----__--___-________-._....-._---__ 181 Planktonic species__________-_-_-__---_-_-_ 186 Faunal zonation__________________________________ -
28. Radiolarians from the Kerguelen Plateau, Leg 1191
Barron, J., Larsen, B., et al., 1991 Proceedings of the Ocean Drilling Program, Scientific Results, Vol. 119 28. RADIOLARIANS FROM THE KERGUELEN PLATEAU, LEG 1191 Jean-Pierre Caulet2 ABSTRACT Radiolarians are abundant and well preserved in the Neogene of the Kerguelen Plateau. They are common and mod- erately to well preserved in the Oligocene sequences of Site 738, where the Eocene/Oligocene boundary was observed for the first time in subantarctic sediments, and Site 744. Radiolarians are absent from all glacial sediments from Prydz Bay. Classical Neogene stratigraphic markers were tabulated at all sites. Correlations with paleomagnetic ages were made at Sites 745 and 746 for 26 Pliocene-Pleistocene radiolarian events. Many Miocene to Holocene species are missing from Sites 736 and 737, which were drilled in shallow water (less than 800 m). The missing species are considered to be deep- living forms. Occurrences and relative abundances of morphotypes at six sites are reported. Two new genera {Eurystomoskevos and Cymaetron) and 17 new species (Actinomma kerguelenensis, A. campilacantha, Prunopyle trypopyrena, Stylodic- tya tainemplekta, Lithomelissa cheni, L. dupliphysa, Lophophaena(t) thaumasia, Pseudodictyophimus galeatus, Lam- procyclas inexpectata, L. prionotocodon, Botryostrobus kerguelensis, B. rednosus, Dictyoprora physothorax, Eucyrti- dium antiquum, £.(?) mariae, Eurystomoskevos petrushevskaae, and Cymaetron sinolampas) are described from the middle Eocene to Oligocene sediments at Sites 738 and 744. Twenty-seven stratigraphic events are recorded in the middle to late Eocene of Site 738, and 27 additional stratigraphic datums are recorded, and correlated to paleomagnetic stratig- raphy, in the early Oligocene at Sites 738 and 744. Eight radiolarian events are recorded in the late Oligocene at Site 744. -
International Symposium on Foraminifera FORAMS 2014 Chile, 19-24 January 2014
International Symposium on Foraminifera FORAMS 2014 Chile, 19-24 January 2014 Abstract Volume Edited by: Margarita Marchant & Tatiana Hromic International Symposium on Foraminifera FORAMS 2014 Chile, 19–24 January 2014 Abstract Volume Edited by: Margarita Marchant & Tatiana Hromic Grzybowski Foundation, 2014 International Symposium on Foraminifera FORAMS 2014, Chile 19–24 January 2014 Abstract Volume Edited by: Margarita Marchant Universidad de Concepción, Concepción, Chile and Tatiana Hromic Universidad de Magallanes, Punta Arenas, Chile Published by The Grzybowski Foundation Grzybowski Foundation Special Publication No. 20 First published in 2014 by the Grzybowski Foundation a charitable scientific foundation which associates itself with the Geological Society of Poland, founded in 1992. The Grzybowski Foundation promotes and supports education and research in the field of Micropalaeontology through its Library (located at the Geological Museum of the Jagiellonian University), Special Publications, Student Grant-in-Aid Programme, Conferences (the MIKRO- and IWAF- meetings), and by organising symposia at other scientific meetings. Visit our website: www.gf.tmsoc.org Grzybowski Foundation Special Publications Editorial Board (2012-2016): M.A. Gasiński (PL) M.A. Kaminski (GB/KSA) M. Kučera (D) E. Platon (Utah) P. Sikora (Texas) R. Coccioni (Italy) J. Van Couvering (NY) P. Geroch (CA) M. Bubík (Cz.Rep) S. Filipescu (Romania) L. Alegret (Spain) S. Crespo de Cabrera (Kuwait) J. Nagy (Norway) J. Pawłowski (Switz.) J. Hohenegger (Austria) C. -
The Recent Foraminifera and Facies of the Bass Canyon: a Temperate Submarine Canyon in Gippsland, Australia
Journal of Micropalaeontology, 22: 63–83. 0262-821X/03 $15.00 2003 The Micropalaeontological Society The Recent foraminifera and facies of the Bass Canyon: a temperate submarine canyon in Gippsland, Australia ANDREW J. SMITH & STEPHEN J. GALLAGHER School of Earth Sciences, The University of Melbourne, Victoria 3010, Australia (e-mail: [email protected]) ABSTRACT – This study describes the foraminifera and facies of a large submarine canyon: the Bass Canyon, in the Gippsland Basin off the coast of southeastern Australia. The study incorporates facies analyses and interpretations of three types of foraminiferal distributional data: forms alive at time of collection, recently dead forms and relict forms. Four principle biofacies types occur: (1) middle shelf to shelf-break carbonate sand; (2) oxic upper to middle bathyal carbonate sand and gravel, with abundant bryozoans; (3) reduced oxic middle bathyal carbonate sand and gravel and (4) lower bathyal oxic muddy sand to Globigerina Ooze. Correspondence Analysis of the 61 parameters (percentage abundance of foraminifera and % carbonate) in 36 samples yielded a clear depth-related pattern, although other related parameters such as dissolved oxygen and substrate also exert control on the foraminiferal assemblages. Relict foraminifera are restricted to shelfal depths, shallower than 145 m. This pattern is similar to other shelf regions in Australia, where shelf areas were exposed during the Last Glacial Maximum, reworking shelf facies shallower than 150 m. The distribution of living foraminifera is similar to the distribution of the total assemblage, suggesting that the region has not been significantly mixed by wave, slump or bioturbation processes. The majority of the modern Bass Canyon foraminiferal assemblages are cosmopolitan species, with few (semi-)endemic taxa that are mostly restricted to the shelf.