Pyritized Radiolarians from the Mid-Cretaceous Deposits of the Pieniny Klippen Belt — a Model of Pyritization in an Anoxic Environment
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Molecular Phylogenetic Position of Hexacontium Pachydermum Jørgensen (Radiolaria)
Marine Micropaleontology 73 (2009) 129–134 Contents lists available at ScienceDirect Marine Micropaleontology journal homepage: www.elsevier.com/locate/marmicro Molecular phylogenetic position of Hexacontium pachydermum Jørgensen (Radiolaria) Tomoko Yuasa a,⁎, Jane K. Dolven b, Kjell R. Bjørklund b, Shigeki Mayama c, Osamu Takahashi a a Department of Astronomy and Earth Sciences, Tokyo Gakugei University, Koganei, Tokyo 184-8501, Japan b Natural History Museum, University of Oslo, P.O. Box 1172, Blindern, 0318 Oslo, Norway c Department of Biology, Tokyo Gakugei University, Koganei, Tokyo 184-8501, Japan article info abstract Article history: The taxonomic affiliation of Hexacontium pachydermum Jørgensen, specifically whether it belongs to the Received 9 April 2009 order Spumellarida or the order Entactinarida, is a subject of ongoing debate. In this study, we sequenced the Received in revised form 3 August 2009 18S rRNA gene of H. pachydermum and of three spherical spumellarians of Cladococcus viminalis Haeckel, Accepted 7 August 2009 Arachnosphaera myriacantha Haeckel, and Astrosphaera hexagonalis Haeckel. Our molecular phylogenetic analysis revealed that the spumellarian species of C. viminalis, A. myriacantha, and A. hexagonalis form a Keywords: monophyletic group. Moreover, this clade occupies a sister position to the clade comprising the spongodiscid Radiolaria fi Entactinarida spumellarians, coccodiscid spumellarians, and H. pachydermum. This nding is contrary to the results of Spumellarida morphological studies based on internal spicular morphology, placing H. pachydermum in the order Nassellarida Entactinarida, which had been considered to have a common ancestor shared with the nassellarians. 18S rRNA gene © 2009 Elsevier B.V. All rights reserved. Molecular phylogeny. 1. Introduction the order Entactinarida has an inner spicular system homologenous with that of the order Nassellarida. -
Rhizaria, Cercozoa)
Protist, Vol. 166, 363–373, July 2015 http://www.elsevier.de/protis Published online date 28 May 2015 ORIGINAL PAPER Molecular Phylogeny of the Widely Distributed Marine Protists, Phaeodaria (Rhizaria, Cercozoa) a,1 a a b Yasuhide Nakamura , Ichiro Imai , Atsushi Yamaguchi , Akihiro Tuji , c d Fabrice Not , and Noritoshi Suzuki a Plankton Laboratory, Graduate School of Fisheries Sciences, Hokkaido University, Hakodate, Hokkaido 041–8611, Japan b Department of Botany, National Museum of Nature and Science, Tsukuba 305–0005, Japan c CNRS, UMR 7144 & Université Pierre et Marie Curie, Station Biologique de Roscoff, Equipe EPPO - Evolution du Plancton et PaléoOcéans, Place Georges Teissier, 29682 Roscoff, France d Institute of Geology and Paleontology, Graduate School of Science, Tohoku University, Sendai 980–8578, Japan Submitted January 1, 2015; Accepted May 19, 2015 Monitoring Editor: David Moreira Phaeodarians are a group of widely distributed marine cercozoans. These plankton organisms can exhibit a large biomass in the environment and are supposed to play an important role in marine ecosystems and in material cycles in the ocean. Accurate knowledge of phaeodarian classification is thus necessary to better understand marine biology, however, phylogenetic information on Phaeodaria is limited. The present study analyzed 18S rDNA sequences encompassing all existing phaeodarian orders, to clarify their phylogenetic relationships and improve their taxonomic classification. The mono- phyly of Phaeodaria was confirmed and strongly supported by phylogenetic analysis with a larger data set than in previous studies. The phaeodarian clade contained 11 subclades which generally did not correspond to the families and orders of the current classification system. Two families (Challengeri- idae and Aulosphaeridae) and two orders (Phaeogromida and Phaeocalpida) are possibly polyphyletic or paraphyletic, and consequently the classification needs to be revised at both the family and order levels by integrative taxonomy approaches. -
September 2002
RADI LARIA VOLUME 20 SEPTEMBER 2002 NEWSLETTER OF THE INTERNATIONAL ASSOCIATION OF RADIOLARIAN PALEONTOLOGISTS ISSN: 0297.5270 INTERRAD International Association of Radiolarian Paleontologists A Research Group of the International Paleontological Association Officers of the Association President Past President PETER BAUMBARTNER JOYCE R. BLUEFORD Lausanne, Switzerland California, USA [email protected] [email protected] Secretary Treasurer JONATHAN AITCHISON ELSPETH URQUHART Department of Earth Sciences JOIDES Office University of Hong Kong Department of Geology and Geophysics Pokfulam Road, University of Miami - RSMAS Hong Kong SAR, 4600 Rickenbacker Causeway CHINA Miami FL 33149 Florida Tel: (852) 2859 8047 Fax: (852) 2517 6912 U.S.A. e-mail: [email protected] Tel: 1-305-361-4668 Fax: 1-305-361-4632 Email: [email protected] Working Group Chairmen Paleozoic Cenozoic PATRICIA, WHALEN, U.S.A. ANNIKA SANFILIPPO California, U.S.A. [email protected] [email protected] Mesozoic Recent RIE S. HORI Matsuyama, JAPAN DEMETRIO BOLTOVSKOY Buenos Aires, ARGENTINA [email protected] [email protected] INTERRAD is an international non-profit organization for researchers interested in all aspects of radiolarian taxonomy, palaeobiology, morphology, biostratigraphy, biology, ecology and paleoecology. INTERRAD is a Research Group of the International Paleontological Association (IPA). Since 1978 members of INTERRAD meet every three years to present papers and exchange ideas and materials INTERRAD MEMBERSHIP: The international Association of Radiolarian Paleontologists is open to any one interested on receipt of subscription. The actual fee US $ 15 per year. Membership queries and subscription send to Treasurer. Changes of address can be sent to the Secretary. -
Radiozoa (Acantharia, Phaeodaria and Radiolaria) and Heliozoa
MICC16 26/09/2005 12:21 PM Page 188 CHAPTER 16 Radiozoa (Acantharia, Phaeodaria and Radiolaria) and Heliozoa Cavalier-Smith (1987) created the phylum Radiozoa to Radiating outwards from the central capsule are the include the marine zooplankton Acantharia, Phaeodaria pseudopodia, either as thread-like filopodia or as and Radiolaria, united by the presence of a central axopodia, which have a central rod of fibres for rigid- capsule. Only the Radiolaria including the siliceous ity. The ectoplasm typically contains a zone of frothy, Polycystina (which includes the orders Spumellaria gelatinous bubbles, collectively termed the calymma and Nassellaria) and the mixed silica–organic matter and a swarm of yellow symbiotic algae called zooxan- Phaeodaria are preserved in the fossil record. The thellae. The calymma in some spumellarian Radiolaria Acantharia have a skeleton of strontium sulphate can be so extensive as to obscure the skeleton. (i.e. celestine SrSO4). The radiolarians range from the A mineralized skeleton is usually present within the Cambrian and have a virtually global, geographical cell and comprises, in the simplest forms, either radial distribution and a depth range from the photic zone or tangential elements, or both. The radial elements down to the abyssal plains. Radiolarians are most useful consist of loose spicules, external spines or internal for biostratigraphy of Mesozoic and Cenozoic deep sea bars. They may be hollow or solid and serve mainly to sediments and as palaeo-oceanographical indicators. support the axopodia. The tangential elements, where Heliozoa are free-floating protists with roughly present, generally form a porous lattice shell of very spherical shells and thread-like pseudopodia that variable morphology, such as spheres, spindles and extend radially over a delicate silica endoskeleton. -
Phylogenomics Supports the Monophyly of the Cercozoa T ⁎ Nicholas A.T
Molecular Phylogenetics and Evolution 130 (2019) 416–423 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Phylogenomics supports the monophyly of the Cercozoa T ⁎ Nicholas A.T. Irwina, , Denis V. Tikhonenkova,b, Elisabeth Hehenbergera,1, Alexander P. Mylnikovb, Fabien Burkia,2, Patrick J. Keelinga a Department of Botany, University of British Columbia, Vancouver V6T 1Z4, British Columbia, Canada b Institute for Biology of Inland Waters, Russian Academy of Sciences, Borok 152742, Russia ARTICLE INFO ABSTRACT Keywords: The phylum Cercozoa consists of a diverse assemblage of amoeboid and flagellated protists that forms a major Cercozoa component of the supergroup, Rhizaria. However, despite its size and ubiquity, the phylogeny of the Cercozoa Rhizaria remains unclear as morphological variability between cercozoan species and ambiguity in molecular analyses, Phylogeny including phylogenomic approaches, have produced ambiguous results and raised doubts about the monophyly Phylogenomics of the group. Here we sought to resolve these ambiguities using a 161-gene phylogenetic dataset with data from Single-cell transcriptomics newly available genomes and deeply sequenced transcriptomes, including three new transcriptomes from Aurigamonas solis, Abollifer prolabens, and a novel species, Lapot gusevi n. gen. n. sp. Our phylogenomic analysis strongly supported a monophyletic Cercozoa, and approximately-unbiased tests rejected the paraphyletic topologies observed in previous studies. The transcriptome of L. gusevi represents the first transcriptomic data from the large and recently characterized Aquavolonidae-Treumulida-'Novel Clade 12′ group, and phyloge- nomics supported its position as sister to the cercozoan subphylum, Endomyxa. These results provide insights into the phylogeny of the Cercozoa and the Rhizaria as a whole. -
Fine Structure of a Large Dinoflagellate Symbiont Associated with a Colonial Radiolarian (Collozoum Sp.) in the Banda Sea
Symbiosis, 24 (1998) 259-270 259 Balaban, Philadelphia/Rehovot Fine Structure of a Large Dinoflagellate Symbiont Associated with a Colonial Radiolarian (Collozoum sp.) in the Banda Sea 0. ROGER ANDERSONl*, CHRISTOPHER LANGDONl, and T ANIEL DANELIAN2 1 Biological Oceanography, Lamont-Doherty Earth Observatory of Columbia University, Palisades, NY 10964, USA, Tel. +914 365-8452, Fax. +914 365-8150, E-mail. [email protected]; and 2 Department of Geology and Geophysics, The University of Edinburgh, West Mains Road, Edinburgh EH9 3JW, United Kingdom, Tel. +44-131-6505943, Fax. +44-131-6683184, E-mail. [email protected]. uk Received September 10, 1997; Accepted October 12, 1997 Abstract A wide variety of algal symbionts has been reported in solitary and colonial radiolaria including prasinophytes, prymnesiophytes, and dinoflagellates. Among the symbiotic dinoflagellates the typical size is 6 to 12 µm. During a plankton collection in the Banda Sea, we obtained a skeletonless colonial radiolarian (Collozoum sp.) with an unusually large dinoflagellate symbiont (c. 25 µm). We report the fine structure of the symbiont and possible correlates with function. The globose cell has a single layer of plastids distributed at the periphery of the cell, a mesokaryotic nucleus with puffy chromosomes characteristic of some dinoflagellates, a very large mass of osmiophilic matter that fills most of the cytoplasm, peripheral chloroplasts with lamina containing 2-3 thylakoids, and a very reduced chondriome. The relatively small amount of mitochondria, the large mass of reserve material, and the nearly continuous layer of plastids at the periphery suggest that this symbiont is maximally active as a photosynthetic unit with minimal respiratory activity, thus enhancing its role as a source of nutrients for the host. -
Diversity of Radiolarian Families Through Time
o Bull. Soc. géol. Fr., 2003, t. 174, n 5, pp. 453-469 Séance spécialisée : Paléobiodiversité, crises et paléoenvironnements Paris, 11-13 décembre 2001 Diversity of radiolarian families through time PATRICK DE WEVER1,LUIS O’DOGHERTY2,MARTIAL CARIDROIT3,PAULIAN DUMITRICA4,JEAN GUEX4, CATHERINE NIGRINI5 and JEAN-PIERRE CAULET1 Key Words. – Radiolaria, Family, Diversity, Palaeozoic, Mesozoic, Cenozoic, Extinction, Radiation, Protocists. Abstract. – The examination of radiolarian biodiversity at the family level through Phanerozoic time reveals some gene- ral trends known in other groups of organisms, especially among plankton, while some other trends seem to be quite pe- culiar. The Permian /Triassic crisis that is one of the most important in the evolution of marine organisms, is marked in radiolarian assemblages by the extinction of two orders (Albaillellaria and Latentifistularia) towards the end of the Per- mian, and mostly by the tremendous diversification of Spumellaria and Nassellaria in the early-mid Triassic. Radiola- rian diversity increased from Cambrian to Jurassic, remained quite stable during the Cretaceous and has decreased slightly since then. Diversité des familles de radiolaires au cours du temps Mots clés. – Radiolaires, Famille, Diversité, Paléozoïque, Mésozoïque, Cénozoïque, Extinction, Radiation, Protoctistes. Résumé. – L’examen de la biodiversité des radiolaires, au niveau de la famille au cours du Phanérozoïque révèle quel- ques tendances générales connues chez d’autres groupes d’organismes, surtout dans le plancton, alors que d’autres ten- dances leur sont particulières. La crise permo-triasique, l’une des plus importantes dans l’évolution des organismes marins, est marquée chez les radiolaires par l’extinction de deux familles (Albaillellaria et Latentifistularia) vers la fin du Permien, mais surtout par une énorme diversification des spumellaires et nassellaires au Trias inférieur et moyen. -
Inferring Ancestry
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology 1176 Inferring Ancestry Mitochondrial Origins and Other Deep Branches in the Eukaryote Tree of Life DING HE ACTA UNIVERSITATIS UPSALIENSIS ISSN 1651-6214 ISBN 978-91-554-9031-7 UPPSALA urn:nbn:se:uu:diva-231670 2014 Dissertation presented at Uppsala University to be publicly examined in Fries salen, Evolutionsbiologiskt centrum, Norbyvägen 18, 752 36, Uppsala, Friday, 24 October 2014 at 10:30 for the degree of Doctor of Philosophy. The examination will be conducted in English. Faculty examiner: Professor Andrew Roger (Dalhousie University). Abstract He, D. 2014. Inferring Ancestry. Mitochondrial Origins and Other Deep Branches in the Eukaryote Tree of Life. Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology 1176. 48 pp. Uppsala: Acta Universitatis Upsaliensis. ISBN 978-91-554-9031-7. There are ~12 supergroups of complex-celled organisms (eukaryotes), but relationships among them (including the root) remain elusive. For Paper I, I developed a dataset of 37 eukaryotic proteins of bacterial origin (euBac), representing the conservative protein core of the proto- mitochondrion. This gives a relatively short distance between ingroup (eukaryotes) and outgroup (mitochondrial progenitor), which is important for accurate rooting. The resulting phylogeny reconstructs three eukaryote megagroups and places one, Discoba (Excavata), as sister group to the other two (neozoa). This rejects the reigning “Unikont-Bikont” root and highlights the evolutionary importance of Excavata. For Paper II, I developed a 150-gene dataset to test relationships in supergroup SAR (Stramenopila, Alveolata, Rhizaria). Analyses of all 150-genes give different trees with different methods, but also reveal artifactual signal due to extremely long rhizarian branches and illegitimate sequences due to horizontal gene transfer (HGT) or contamination. -
Photosymbiotic Associations in Planktonic Foraminifera and Radiolaria
Hydrobiologia 461: 1–7, 2001. 1 J.D. McKenzie (ed.), Microbial Aquatic Symbioses: from Phylogeny to Biotechnology. © 2001 Kluwer Academic Publishers. Printed in the Netherlands. Photosymbiotic associations in planktonic foraminifera and radiolaria Rebecca J. Gast1 &DavidA.Caron2 1Woods Hole Oceanographic Institution, Woods Hole, MA 02543, U.S.A. 2Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, U.S.A. Key words: sarcodine, photosymbiosis, molecular phylogeny, srDNA Abstract Foraminifera, radiolaria and acantharia are relatively large (>1 mm in most cases) unicellular eukaryotes that occur in pelagic oceanic communities. Commonly referred to as planktonic sarcodines, these organisms often harbor algal symbionts. The symbionts have been described as dinoflagellates, chrysophytes and prasinophytes based upon their morphology either in the host or as free-living organisms in culture. To investigate the molecular taxonomic affiliations of the algae, and to determine the sequence variability between symbionts from individual hosts, we examined the small subunit ribosomal DNA sequences from symbionts isolated from planktonic foraminifera and radiolaria. The symbionts that we analyzed included dinoflagellates, prasinophytes and prymnesiophytes. We have, through our studies of planktonic sarcodine symbioses, and through comparison with other symbiotic associations (corals and lichens), observed that taxonomically distinct lineages of symbiotic algae are not uncom- mon. How do such different algae share -
Response of the Larger Protozooplankton to an Iron-Induced Phytoplankton Bloom in the Polar Frontal Zone of the Southern Ocean (Eisenex)
ARTICLE IN PRESS Deep-Sea Research I 54 (2007) 774–791 www.elsevier.com/locate/dsri Response of the larger protozooplankton to an iron-induced phytoplankton bloom in the Polar Frontal Zone of the Southern Ocean (EisenEx) Joachim HenjesÃ, Philipp Assmy, Christine Klaas, Victor Smetacek Alfred Wegener Institute for Polar and Marine Research, Am Handelshafen 12, 27570 Bremerhaven, Germany Received 2 June 2006; received in revised form 14 February 2007; accepted 19 February 2007 Available online 7 March 2007 Abstract The responses of larger (450 mm in diameter) protozooplankton groups to a phytoplankton bloom induced by in situ iron fertilization (EisenEx) in the Polar Frontal Zone (PFZ) of the Southern Ocean in austral spring are presented. During the 21 days of the experiment, samples were collected from seven discrete depths in the upper 150 m inside and outside the fertilized patch for the enumeration of acantharia, foraminifera, radiolaria, heliozoa, tintinnid ciliates and aplastidic thecate dinoflagellates. Inside the patch, acantharian numbers increased twofold, but only negligibly in surrounding waters. This finding is of major interest, since acantharia are suggested to be involved in the formation of barite (BaSO4), a palaeoindicator of both ancient and modern high-productivity regimes. Foraminifera increased significantly in abundance inside and outside the fertilized patch. However, the marked increase of juveniles after a full-moon event suggests a lunar periodicity in the reproduction cycle of some foraminiferan species rather than a reproductive response to enhanced food availability. In contrast, adult radiolaria showed no clear trend during the experiment, but juveniles increased threefold, indicating elevated reproduction. Aplastidic thecate dinoflagellates almost doubled in numbers and biomass but also increased outside the patch. -
Biological Composition and Microbial Dynamics of Sinking Particulate Organic Matter at Abyssal Depths in the Oligotrophic Open Ocean
Biological composition and microbial dynamics of sinking particulate organic matter at abyssal depths in the oligotrophic open ocean Dominique Boeufa,1, Bethanie R. Edwardsa,1,2, John M. Eppleya,1, Sarah K. Hub,3, Kirsten E. Poffa, Anna E. Romanoa, David A. Caronb, David M. Karla, and Edward F. DeLonga,4 aDaniel K. Inouye Center for Microbial Oceanography: Research and Education, University of Hawaii, Manoa, Honolulu, HI 96822; and bDepartment of Biological Sciences, University of Southern California, Los Angeles, CA 90089 Contributed by Edward F. DeLong, April 22, 2019 (sent for review February 21, 2019; reviewed by Eric E. Allen and Peter R. Girguis) Sinking particles are a critical conduit for the export of organic sample both suspended as well as slowly sinking POM. Because material from surface waters to the deep ocean. Despite their filtration methods can be biased by the volume of water filtered importance in oceanic carbon cycling and export, little is known (21), also collect suspended particles, and may under-sample about the biotic composition, origins, and variability of sinking larger, more rapidly sinking particles, it remains unclear how well particles reaching abyssal depths. Here, we analyzed particle- they represent microbial communities on sinking POM in the associated nucleic acids captured and preserved in sediment traps deep sea. Sediment-trap sampling approaches have the potential at 4,000-m depth in the North Pacific Subtropical Gyre. Over the 9- to overcome some of these difficulties because they selectively month time-series, Bacteria dominated both the rRNA-gene and capture sinking particles. rRNA pools, followed by eukaryotes (protists and animals) and trace The Hawaii Ocean Time-series Station ALOHA is an open- amounts of Archaea. -
Molecular Phylogeny and Morphological Evolution of The
Protist, Vol. 163, 435–450, May 2012 http://www.elsevier.de/protis Published online date 8 December 2011 ORIGINAL PAPER Molecular Phylogeny and Morphological Evolution of the Acantharia (Radiolaria) a,1 b a a Johan Decelle , Noritoshi Suzuki , Fredéric Mahé , Colomban de Vargas , and a Fabrice Not a CNRS, UMR 7144 & Université Pierre et Marie Curie, Station Biologique de Roscoff, Equipe EPPO - Evolution du Plancton et PaléoOcéans, Place Georges Teissier, 29682 Roscoff, France b Institute of Geology and Paleontology, Graduate School of Science, Tohoku University, 6–3Aoba, Aramaki, Aoba-ku, Sendai, 980–8578 Japan Submitted April 23, 2011; Accepted October 10, 2011 Monitoring Editor: David Moreira Acantharia are ubiquitous and abundant rhizarian protists in the world ocean. The skeleton made of strontium sulphate and the fact that certain harbour microalgal endosymbionts make them key planktonic players for the ecology of marine ecosystems. Based on morphological criteria, the current taxonomy of Acantharia was established by W.T. Schewiakoff in 1926, since when no major revision has been undertaken. Here, we established the first comprehensive molecular phylogeny from single morphologically-identified acantharian cells, isolated from various oceans. Our phylogenetic analyses based on 78 18S rDNA and 107 partial 28S rDNA revealed the existence of 6 main clades, sub-divided into 13 sub-clades. The polyphyletic nature of acantharian families and genera demonstrates the need for revision of the current taxonomy. This molecular phylogeny, which highlights the taxonomic relevance of specific morphological criteria, such as the presence of a shell and the organisation of the central junction, provides a robust phylogenetic framework for future taxonomic emendation.