An Evaluated List of Cenozic-Recent Radiolarian Species Names (Polycystinea), Based on Those Used in the DSDP, ODP and IODP Deep-Sea Drilling Programs
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Molecular Phylogenetic Position of Hexacontium Pachydermum Jørgensen (Radiolaria)
Marine Micropaleontology 73 (2009) 129–134 Contents lists available at ScienceDirect Marine Micropaleontology journal homepage: www.elsevier.com/locate/marmicro Molecular phylogenetic position of Hexacontium pachydermum Jørgensen (Radiolaria) Tomoko Yuasa a,⁎, Jane K. Dolven b, Kjell R. Bjørklund b, Shigeki Mayama c, Osamu Takahashi a a Department of Astronomy and Earth Sciences, Tokyo Gakugei University, Koganei, Tokyo 184-8501, Japan b Natural History Museum, University of Oslo, P.O. Box 1172, Blindern, 0318 Oslo, Norway c Department of Biology, Tokyo Gakugei University, Koganei, Tokyo 184-8501, Japan article info abstract Article history: The taxonomic affiliation of Hexacontium pachydermum Jørgensen, specifically whether it belongs to the Received 9 April 2009 order Spumellarida or the order Entactinarida, is a subject of ongoing debate. In this study, we sequenced the Received in revised form 3 August 2009 18S rRNA gene of H. pachydermum and of three spherical spumellarians of Cladococcus viminalis Haeckel, Accepted 7 August 2009 Arachnosphaera myriacantha Haeckel, and Astrosphaera hexagonalis Haeckel. Our molecular phylogenetic analysis revealed that the spumellarian species of C. viminalis, A. myriacantha, and A. hexagonalis form a Keywords: monophyletic group. Moreover, this clade occupies a sister position to the clade comprising the spongodiscid Radiolaria fi Entactinarida spumellarians, coccodiscid spumellarians, and H. pachydermum. This nding is contrary to the results of Spumellarida morphological studies based on internal spicular morphology, placing H. pachydermum in the order Nassellarida Entactinarida, which had been considered to have a common ancestor shared with the nassellarians. 18S rRNA gene © 2009 Elsevier B.V. All rights reserved. Molecular phylogeny. 1. Introduction the order Entactinarida has an inner spicular system homologenous with that of the order Nassellarida. -
First Application of PDMPO to Examine Silicification in Polycystine Radiolaria
Plankton Benthos Res 4(3): 89–94, 2009 Plankton & Benthos Research © The Plankton Society of Japan First application of PDMPO to examine silicification in polycystine Radiolaria KAORU OGANE1,*, AKIHIRO TUJI2, NORITOSHI SUZUKI1, TOSHIYUKI KURIHARA3 & ATSUSHI MATSUOKA4 1 Institute of Geology and Paleontology, Graduate School of Science, Tohoku University, Sendai, 980–8578, Japan 2 Department of Botany, National Museum of Nature and Science, Tsukuba, 305–0005, Japan 3 Graduate School of Science and Technology, Niigata University, Niigata 950–2181, Japan 4 Department of Geology, Faculty of Science, Niigata University, Niigata 950–2181, Japan Received 4 February 2009; Accepted 10 April 2009 Abstract: 2-(4-pyridyl)-5-[(4-(2-dimethylaminoethylaminocarbamoyl)methoxy)-phenyl] oxazole (PDMPO) is a fluo- rescent compound that accumulates in acidic cell compartments. PDMPO is accumulated with silica under acidic con- ditions, and the newly developed silica skeletons show green fluorescent light. This study is the first to use PDMPO in polycystine radiolarians, which are unicellular planktonic protists. We tested Acanthodesmia sp., Rhizosphaera trigo- nacantha, and Spirocyrtis scalaris for emission of green fluorescence. Entire skeletons of Acanthodesmia sp. and Sr. scalaris emitted green fluorescent light, whereas only the outermost shell and radial spines of Rz. trigonacantha showed fluorescence. Two additional species, Spongaster tetras tetras and Rhopalastrum elegans did not show fluorescence. Green fluorescence of the entire skeleton is more like the “skeletal thickening growth” defined by silica deposition throughout the surface of the existing skeleton. The brightness of the fluorescence varied with each cell. This difference in fluorescence may reflect the rate of growth in these cells. Green fluorescence in PDMPO-treated polycystines sug- gests the presence of similar metabolic systems with controlled pH. -
Rhizaria, Cercozoa)
Protist, Vol. 166, 363–373, July 2015 http://www.elsevier.de/protis Published online date 28 May 2015 ORIGINAL PAPER Molecular Phylogeny of the Widely Distributed Marine Protists, Phaeodaria (Rhizaria, Cercozoa) a,1 a a b Yasuhide Nakamura , Ichiro Imai , Atsushi Yamaguchi , Akihiro Tuji , c d Fabrice Not , and Noritoshi Suzuki a Plankton Laboratory, Graduate School of Fisheries Sciences, Hokkaido University, Hakodate, Hokkaido 041–8611, Japan b Department of Botany, National Museum of Nature and Science, Tsukuba 305–0005, Japan c CNRS, UMR 7144 & Université Pierre et Marie Curie, Station Biologique de Roscoff, Equipe EPPO - Evolution du Plancton et PaléoOcéans, Place Georges Teissier, 29682 Roscoff, France d Institute of Geology and Paleontology, Graduate School of Science, Tohoku University, Sendai 980–8578, Japan Submitted January 1, 2015; Accepted May 19, 2015 Monitoring Editor: David Moreira Phaeodarians are a group of widely distributed marine cercozoans. These plankton organisms can exhibit a large biomass in the environment and are supposed to play an important role in marine ecosystems and in material cycles in the ocean. Accurate knowledge of phaeodarian classification is thus necessary to better understand marine biology, however, phylogenetic information on Phaeodaria is limited. The present study analyzed 18S rDNA sequences encompassing all existing phaeodarian orders, to clarify their phylogenetic relationships and improve their taxonomic classification. The mono- phyly of Phaeodaria was confirmed and strongly supported by phylogenetic analysis with a larger data set than in previous studies. The phaeodarian clade contained 11 subclades which generally did not correspond to the families and orders of the current classification system. Two families (Challengeri- idae and Aulosphaeridae) and two orders (Phaeogromida and Phaeocalpida) are possibly polyphyletic or paraphyletic, and consequently the classification needs to be revised at both the family and order levels by integrative taxonomy approaches. -
Protist Phylogeny and the High-Level Classification of Protozoa
Europ. J. Protistol. 39, 338–348 (2003) © Urban & Fischer Verlag http://www.urbanfischer.de/journals/ejp Protist phylogeny and the high-level classification of Protozoa Thomas Cavalier-Smith Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK; E-mail: [email protected] Received 1 September 2003; 29 September 2003. Accepted: 29 September 2003 Protist large-scale phylogeny is briefly reviewed and a revised higher classification of the kingdom Pro- tozoa into 11 phyla presented. Complementary gene fusions reveal a fundamental bifurcation among eu- karyotes between two major clades: the ancestrally uniciliate (often unicentriolar) unikonts and the an- cestrally biciliate bikonts, which undergo ciliary transformation by converting a younger anterior cilium into a dissimilar older posterior cilium. Unikonts comprise the ancestrally unikont protozoan phylum Amoebozoa and the opisthokonts (kingdom Animalia, phylum Choanozoa, their sisters or ancestors; and kingdom Fungi). They share a derived triple-gene fusion, absent from bikonts. Bikonts contrastingly share a derived gene fusion between dihydrofolate reductase and thymidylate synthase and include plants and all other protists, comprising the protozoan infrakingdoms Rhizaria [phyla Cercozoa and Re- taria (Radiozoa, Foraminifera)] and Excavata (phyla Loukozoa, Metamonada, Euglenozoa, Percolozoa), plus the kingdom Plantae [Viridaeplantae, Rhodophyta (sisters); Glaucophyta], the chromalveolate clade, and the protozoan phylum Apusozoa (Thecomonadea, Diphylleida). Chromalveolates comprise kingdom Chromista (Cryptista, Heterokonta, Haptophyta) and the protozoan infrakingdom Alveolata [phyla Cilio- phora and Miozoa (= Protalveolata, Dinozoa, Apicomplexa)], which diverged from a common ancestor that enslaved a red alga and evolved novel plastid protein-targeting machinery via the host rough ER and the enslaved algal plasma membrane (periplastid membrane). -
Radiozoa (Acantharia, Phaeodaria and Radiolaria) and Heliozoa
MICC16 26/09/2005 12:21 PM Page 188 CHAPTER 16 Radiozoa (Acantharia, Phaeodaria and Radiolaria) and Heliozoa Cavalier-Smith (1987) created the phylum Radiozoa to Radiating outwards from the central capsule are the include the marine zooplankton Acantharia, Phaeodaria pseudopodia, either as thread-like filopodia or as and Radiolaria, united by the presence of a central axopodia, which have a central rod of fibres for rigid- capsule. Only the Radiolaria including the siliceous ity. The ectoplasm typically contains a zone of frothy, Polycystina (which includes the orders Spumellaria gelatinous bubbles, collectively termed the calymma and Nassellaria) and the mixed silica–organic matter and a swarm of yellow symbiotic algae called zooxan- Phaeodaria are preserved in the fossil record. The thellae. The calymma in some spumellarian Radiolaria Acantharia have a skeleton of strontium sulphate can be so extensive as to obscure the skeleton. (i.e. celestine SrSO4). The radiolarians range from the A mineralized skeleton is usually present within the Cambrian and have a virtually global, geographical cell and comprises, in the simplest forms, either radial distribution and a depth range from the photic zone or tangential elements, or both. The radial elements down to the abyssal plains. Radiolarians are most useful consist of loose spicules, external spines or internal for biostratigraphy of Mesozoic and Cenozoic deep sea bars. They may be hollow or solid and serve mainly to sediments and as palaeo-oceanographical indicators. support the axopodia. The tangential elements, where Heliozoa are free-floating protists with roughly present, generally form a porous lattice shell of very spherical shells and thread-like pseudopodia that variable morphology, such as spheres, spindles and extend radially over a delicate silica endoskeleton. -
Gayana 72(1) 2008.Pmd
Gayana 72(1): 79-93, 2008 ISSN 0717-652X RADIOLARIOS POLYCYSTINA (PROTOZOA: NASSELLARIA Y SPUMELLARIA) SEDIMENTADOS EN LA ZONA CENTRO-SUR DE CHILE (36°- 43° S) POLYCYSTINA RADIOLARIA (PROTOZOA: NASSELLARIA AND SPUMELLARIA) SEDIMENTED IN THE CENTER-SOUTH ZONE OF CHILE (36°- 43° S) Odette Vergara S.1, Margarita Marchant S. M.1 & Susana Giglio2,3 1Departamento de Zoología, Facultad de Ciencias Naturales y Oceanográficas, Universidad de Concepción, Casilla 160-C, Concepción, Chile, [email protected]. 2Laboratorio de Procesos Oceanográficos y Clima (PROFC), Universidad de Concepción, Casilla 160-C, Concepción, Chile. 3Magíster en Ciencias con mención Oceanografía, Facultad de Ciencias Naturales y Oceanográficas, Universidad de Concepción, Casilla 160-C, Concepción, Chile. RESUMEN Los radiolarios son protozoos planctónicos marinos, los cuales, a pesar de ser sólo una célula, son sofisticados y complejos organismos. La Subclase Radiolaria está formada por 2 superórdenes: Trypilea y Polycystina, siendo el último el más estudiado, pues su esqueleto de opal es más resistente a la disolución en agua de mar y por ende, más comúnmente preservados en el registro fósil. Los radiolarios han sido usados como una útil herramienta oceanográfica, bioestratigráfica y paleoambiental, gracias a su esqueleto de sílice y a su gran rango geológico. En nuestro país el conocimiento de este grupo es muy escaso, es por esto que el presente trabajo, tiene como principal objetivo, aportar con la identificación y descripción de especies de radiolarios Polycystinos, no antes registrados para esta zona en particular. El material fue recolectado por la Expedición PUCK R/V Sonne Cruise SO-156 Valparaíso-Chiloé-Talcahuano realizada en mayo de 2001. -
Vita: OR Anderson
CURRICULUM VITA O. Roger Anderson [Updated May 2020] BIRTH DATE: August 4, 1937 OCCUPATION: Microbial Physiological Ecologist, Biologist, and Educator PROFESSIONAL RANK: Professor of Natural Sciences, Columbia University T. C., 1964-present Teachers College ; Department Chairman, 1974-1980, 1993-1996, 2000-2017 Senior Research Scientist (Adj.), Biology, 1967-present Lamont-Doherty Earth Observatory of Columbia University Faculty Member at Large, Columbia University Graduate School of Arts and Sciences. 1993-present DEGREES: Bachelor of Arts (Botany) Washington University, St. Louis 1959 Master of Arts (Biological Education) Washington University 1961 Doctorate (Biology and Education) Washington University 1964 PROFESSIONAL EXPERIENCE (TEACHING): 1963-64 Washington University, St. Louis 1964-67 Assistant Professor of Natural Sciences Columbia University, Teachers College 1968-70 Associate Professor of Natural Sciences Columbia University, Teachers College 1971- Professor of Natural Sciences Columbia University, Teachers College 1992-1993 College Research Coordinator, Teachers College. 1993-1996 Associate Director, Division of Instruction, T. C. OFFICES IN NATIONAL AND INTERNATIONAL ORGANIZATIONS: 1976 President, National Association for Res. Science Teaching (International) 1993-95 President, Columbia University Chapter Sigma Xi Honorary Scientific Society (National) 1995 President, International Society of Protistology (International) ---------------------------------------------------------------------------------------------------- -
The Horizontal Distribution of Siliceous Planktonic Radiolarian Community in the Eastern Indian Ocean
water Article The Horizontal Distribution of Siliceous Planktonic Radiolarian Community in the Eastern Indian Ocean Sonia Munir 1 , John Rogers 2 , Xiaodong Zhang 1,3, Changling Ding 1,4 and Jun Sun 1,5,* 1 Research Centre for Indian Ocean Ecosystem, Tianjin University of Science and Technology, Tianjin 300457, China; [email protected] (S.M.); [email protected] (X.Z.); [email protected] (C.D.) 2 Research School of Earth Sciences, Australian National University, Acton 2601, Australia; [email protected] 3 Department of Ocean Science, Hong Kong University of Science and Technology, Kowloon, Hong Kong 4 College of Biotechnology, Tianjin University of Science and Technology, Tianjin 300457, China 5 College of Marine Science and Technology, China University of Geosciences, Wuhan 430074, China * Correspondence: [email protected]; Tel.: +86-606-011-16 Received: 9 October 2020; Accepted: 3 December 2020; Published: 13 December 2020 Abstract: The plankton radiolarian community was investigated in the spring season during the two-month cruise ‘Shiyan1’ (10 April–13 May 2014) in the Eastern Indian Ocean. This is the first comprehensive plankton tow study to be carried out from 44 sampling stations across the entire area (80.00◦–96.10◦ E, 10.08◦ N–6.00◦ S) of the Eastern Indian Ocean. The plankton tow samples were collected from a vertical haul from a depth 200 m to the surface. During the cruise, conductivity–temperature–depth (CTD) measurements were taken of temperature, salinity and chlorophyll a from the surface to 200 m depth. Shannon–Wiener’s diversity index (H’) and the dominance index (Y) were used to analyze community structure. -
Articles and Minimizes the Loss of Material
Clim. Past, 16, 2415–2429, 2020 https://doi.org/10.5194/cp-16-2415-2020 © Author(s) 2020. This work is distributed under the Creative Commons Attribution 4.0 License. Technical note: A new automated radiolarian image acquisition, stacking, processing, segmentation and identification workflow Martin Tetard1, Ross Marchant1,a, Giuseppe Cortese2, Yves Gally1, Thibault de Garidel-Thoron1, and Luc Beaufort1 1Aix Marseille Univ, CNRS, IRD, Coll France, INRAE, CEREGE, Aix-en-Provence, France 2GNS Science, Lower Hutt, New Zealand apresent address: School of Electrical Engineering and Robotics, Queensland University of Technology, Brisbane, Australia Correspondence: Martin Tetard ([email protected]) Received: 3 June 2020 – Discussion started: 9 July 2020 Revised: 22 September 2020 – Accepted: 5 October 2020 – Published: 2 December 2020 Abstract. Identification of microfossils is usually done ing, processing, segmentation and recognition, is entirely by expert taxonomists and requires time and a significant automated via a LabVIEW interface, and it takes approx- amount of systematic knowledge developed over many years. imately 1 h per sample. Census data count and classi- These studies require manual identification of numerous fied radiolarian images are then automatically exported and specimens in many samples under a microscope, which is saved. This new workflow paves the way for the analysis very tedious and time-consuming. Furthermore, identifica- of long-term, radiolarian-based palaeoclimatic records from tion may differ between operators, biasing reproducibility. siliceous-remnant-bearing samples. Recent technological advances in image acquisition, pro- cessing and recognition now enable automated procedures for this process, from microscope image acquisition to taxo- nomic identification. 1 Introduction A new workflow has been developed for automated radio- larian image acquisition, stacking, processing, segmentation The term radiolarians currently refers to the polycystine ra- and identification. -
1 Flux Variations and Vertical Distributions Of
1 Flux variations and vertical distributions of siliceous Rhizaria (Radiolaria and 2 Phaeodaria) in the western Arctic Ocean: indices of environmental changes 3 4 Takahito Ikenoue a, b, c, *, Kjell R. Bjørklund b, Svetlana B. Kruglikova d, Jonaotaro 5 Onodera c, Katsunori Kimoto c, Naomi Harada c 6 7 a: Department of Earth and Planetary Sciences, Graduate School of Sciences, Kyushu 8 University, 6-10-1 Hakozaki, Higashi-ku, Fukuoka 812-8581, Japan 9 10 b: Natural History Museum, Department of Geology, University of Oslo, P.O. Box 11 1172 Blindern, 0318 Oslo, Norway 12 13 c: Research and Development Center for Global Change, JAMSTEC, Natsushima-cho 14 2-15, Yokosuka, 237-0061, Japan. 15 16 d: P.P. Shirshov Institute of Oceanology, Russian Academy of Sciences, Nakhimovsky 17 Prospect 36, 117883 Moscow, Russia 18 19 *Corresponding author; Present address: Central Laboratory, Marine Ecology Research 20 Institute, 300 Iwawada, Onjuku-machi, Isumi-gun, Chiba 299-5105 Japan; E-mail: 21 [email protected] 22 23 Abstract 24 The vertical distribution of radiolarians was investigated using a vertical multiple 25 plankton sampler (100−0, 250−100, 500−250 and 1,000−500 m water depths, 62 µm 26 mesh size) at the Northwind Abyssal Plain and southwestern Canada Basin in 27 September 2013. To investigate seasonal variations in the flux of radiolarians in relation 28 to sea ice and water masses, a time series sediment trap system was moored at Station 29 NAP (75°00'N, 162°00'W, bottom depth 1,975 m) in the western Arctic Ocean during 30 October 2010–September 2012. -
Radiolarian Distribution in Equatorial Pacifie Plankton East
OCEANOLOGICA ACTA 1985 -VOL. 8 - N• 1 ~---- Tropical Pacifie Zooplankton distribution Living radiolaria distribution Radiolarian distribution In East Radiolaria Pacifique tropical Distribution du zooplancton equatorial Pacifie plankton Distribution des radiolaires vivants Radiolaria Demetrio Boltovskoy, Silvia S. Jankilevich Consejo Nacional de Investigaciones Cientificas y Técnicas, Departamento de Ciencias Biol6gicas, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, 1428 Buenos Aires, Argentina. Received 2/1/84, in revised form 10/5/84, accepted 22/6/84. ABSTRACT On the basis of radiolarian data, four major areas can be recognized in the Eastern equatorial Pacifie Ocean (transected from approximately 9°N, 80°W to 2°N, 140°W to l7°N, 155°W): 1) Between 5°N, 80°W and 2°N, 95°W, with high overall productivity and low radiolarian abundance and diversity; Spongodiscus sp. A, and to a lesser extent D. tetrathalamus, are the dominating taxa in this assemblage. 2) Along the equator, between approximately 95°W and 140°W. The productivity and planktonic standing stock of this area decrease to the west, while its radiolarian diversity and abundance increa.se, as well as the diversity of sorne other zooplankters. This area can be further subdivided into two sections at 124°W, the western one being conspicuously richer both quanti- and qualitatively than the eastern section. 0. stenozona + T. octacantha are characteristic of this area. 3) From approximately 6°N, 138°W to 10°N, 142°W; radiolarian abundance and diversity drop sharply, as weil as overall planktonic productivity and standing stock. 4) From approximately 10°N, 142°W to 17°N, 153°W; there is a further decrease in radiolarian abundance and diversity. -
An Evaluated List of Cenozic-Recent Radiolarian Species Names (Polycystinea), Based on Those Used in the DSDP, ODP and IODP Deep-Sea Drilling Programs
Zootaxa 3999 (3): 301–333 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2015 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3999.3.1 http://zoobank.org/urn:lsid:zoobank.org:pub:69B048D3-7189-4DC0-80C0-983565F41C83 An evaluated list of Cenozic-Recent radiolarian species names (Polycystinea), based on those used in the DSDP, ODP and IODP deep-sea drilling programs DAVID LAZARUS1, NORITOSHI SUZUKI2, JEAN-PIERRE CAULET3, CATHERINE NIGRINI4†, IRINA GOLL5, ROBERT GOLL5, JANE K. DOLVEN6, PATRICK DIVER7 & ANNIKA SANFILIPPO8 1Museum für Naturkunde, Invalidenstrasse 43, 10115 Berlin, Germany. E-mail: [email protected] 2Institute of Geology and Paleontology, Tohoku University, Sendai 980-8578 Japan. E-mail: [email protected] 3242 rue de la Fure, Charavines, 38850 France. E-mail: [email protected] 4deceased 5Natural Science Dept, Blinn College, 2423 Blinn Blvd, Bryan, Texas 77805, USA. E-mail: [email protected] 6Minnehallveien 27b, 3290 Stavern, Norway. E-mail: [email protected] 7Divdat Consulting, 1392 Madison 6200, Wesley, Arkansas 72773, USA. E-mail: [email protected] 8Scripps Institution of Oceanography, University of California San Diego, La Jolla, California 92093, USA. E-mail: [email protected] Abstract A first reasonably comprehensive evaluated list of radiolarian names in current use is presented, covering Cenozoic fossil to Recent species of the primary fossilising subgroup Polycystinea. It is based on those species names that have appeared in the literature of the Deep Sea Drilling Project and its successor programs, the Ocean Drilling Program and Integrated Ocean Drilling Program, plus additional information from the published literature, and several unpublished taxonomic da- tabase projects.