Seasonal and Spatial Variability of Planktonic Heliozoa in Lake Constance
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Rhizaria, Cercozoa)
Protist, Vol. 166, 363–373, July 2015 http://www.elsevier.de/protis Published online date 28 May 2015 ORIGINAL PAPER Molecular Phylogeny of the Widely Distributed Marine Protists, Phaeodaria (Rhizaria, Cercozoa) a,1 a a b Yasuhide Nakamura , Ichiro Imai , Atsushi Yamaguchi , Akihiro Tuji , c d Fabrice Not , and Noritoshi Suzuki a Plankton Laboratory, Graduate School of Fisheries Sciences, Hokkaido University, Hakodate, Hokkaido 041–8611, Japan b Department of Botany, National Museum of Nature and Science, Tsukuba 305–0005, Japan c CNRS, UMR 7144 & Université Pierre et Marie Curie, Station Biologique de Roscoff, Equipe EPPO - Evolution du Plancton et PaléoOcéans, Place Georges Teissier, 29682 Roscoff, France d Institute of Geology and Paleontology, Graduate School of Science, Tohoku University, Sendai 980–8578, Japan Submitted January 1, 2015; Accepted May 19, 2015 Monitoring Editor: David Moreira Phaeodarians are a group of widely distributed marine cercozoans. These plankton organisms can exhibit a large biomass in the environment and are supposed to play an important role in marine ecosystems and in material cycles in the ocean. Accurate knowledge of phaeodarian classification is thus necessary to better understand marine biology, however, phylogenetic information on Phaeodaria is limited. The present study analyzed 18S rDNA sequences encompassing all existing phaeodarian orders, to clarify their phylogenetic relationships and improve their taxonomic classification. The mono- phyly of Phaeodaria was confirmed and strongly supported by phylogenetic analysis with a larger data set than in previous studies. The phaeodarian clade contained 11 subclades which generally did not correspond to the families and orders of the current classification system. Two families (Challengeri- idae and Aulosphaeridae) and two orders (Phaeogromida and Phaeocalpida) are possibly polyphyletic or paraphyletic, and consequently the classification needs to be revised at both the family and order levels by integrative taxonomy approaches. -
Radiozoa (Acantharia, Phaeodaria and Radiolaria) and Heliozoa
MICC16 26/09/2005 12:21 PM Page 188 CHAPTER 16 Radiozoa (Acantharia, Phaeodaria and Radiolaria) and Heliozoa Cavalier-Smith (1987) created the phylum Radiozoa to Radiating outwards from the central capsule are the include the marine zooplankton Acantharia, Phaeodaria pseudopodia, either as thread-like filopodia or as and Radiolaria, united by the presence of a central axopodia, which have a central rod of fibres for rigid- capsule. Only the Radiolaria including the siliceous ity. The ectoplasm typically contains a zone of frothy, Polycystina (which includes the orders Spumellaria gelatinous bubbles, collectively termed the calymma and Nassellaria) and the mixed silica–organic matter and a swarm of yellow symbiotic algae called zooxan- Phaeodaria are preserved in the fossil record. The thellae. The calymma in some spumellarian Radiolaria Acantharia have a skeleton of strontium sulphate can be so extensive as to obscure the skeleton. (i.e. celestine SrSO4). The radiolarians range from the A mineralized skeleton is usually present within the Cambrian and have a virtually global, geographical cell and comprises, in the simplest forms, either radial distribution and a depth range from the photic zone or tangential elements, or both. The radial elements down to the abyssal plains. Radiolarians are most useful consist of loose spicules, external spines or internal for biostratigraphy of Mesozoic and Cenozoic deep sea bars. They may be hollow or solid and serve mainly to sediments and as palaeo-oceanographical indicators. support the axopodia. The tangential elements, where Heliozoa are free-floating protists with roughly present, generally form a porous lattice shell of very spherical shells and thread-like pseudopodia that variable morphology, such as spheres, spindles and extend radially over a delicate silica endoskeleton. -
New Phylogenomic Analysis of the Enigmatic Phylum Telonemia Further Resolves the Eukaryote Tree of Life
bioRxiv preprint doi: https://doi.org/10.1101/403329; this version posted August 30, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. New phylogenomic analysis of the enigmatic phylum Telonemia further resolves the eukaryote tree of life Jürgen F. H. Strassert1, Mahwash Jamy1, Alexander P. Mylnikov2, Denis V. Tikhonenkov2, Fabien Burki1,* 1Department of Organismal Biology, Program in Systematic Biology, Uppsala University, Uppsala, Sweden 2Institute for Biology of Inland Waters, Russian Academy of Sciences, Borok, Yaroslavl Region, Russia *Corresponding author: E-mail: [email protected] Keywords: TSAR, Telonemia, phylogenomics, eukaryotes, tree of life, protists bioRxiv preprint doi: https://doi.org/10.1101/403329; this version posted August 30, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract The broad-scale tree of eukaryotes is constantly improving, but the evolutionary origin of several major groups remains unknown. Resolving the phylogenetic position of these ‘orphan’ groups is important, especially those that originated early in evolution, because they represent missing evolutionary links between established groups. Telonemia is one such orphan taxon for which little is known. The group is composed of molecularly diverse biflagellated protists, often prevalent although not abundant in aquatic environments. -
Surface Ocean Metabarcoding Confirms Limited Diversity in Planktonic Foraminifera but Reveals Unknown Hyper-Abundant Lineages
www.nature.com/scientificreports OPEN Surface ocean metabarcoding confrms limited diversity in planktonic foraminifera but reveals Received: 19 July 2017 Accepted: 24 January 2018 unknown hyper-abundant lineages Published: xx xx xxxx Raphaël Morard1,2, Marie-José Garet-Delmas2, Frédéric Mahé3, Sarah Romac2, Julie Poulain4, Michal Kucera1 & Colomban de Vargas2 Since the advent of DNA metabarcoding surveys, the planktonic realm is considered a treasure trove of diversity, inhabited by a small number of abundant taxa, and a hugely diverse and taxonomically uncharacterized consortium of rare species. Here we assess if the apparent underestimation of plankton diversity applies universally. We target planktonic foraminifera, a group of protists whose known morphological diversity is limited, taxonomically resolved and linked to ribosomal DNA barcodes. We generated a pyrosequencing dataset of ~100,000 partial 18S rRNA foraminiferal sequences from 32 size fractioned photic-zone plankton samples collected at 8 stations in the Indian and Atlantic Oceans during the Tara Oceans expedition (2009–2012). We identifed 69 genetic types belonging to 41 morphotaxa in our metabarcoding dataset. The diversity saturated at local and regional scale as well as in the three size fractions and the two depths sampled indicating that the diversity of foraminifera is modest and fnite. The large majority of the newly discovered lineages occur in the small size fraction, neglected by classical taxonomy. These unknown lineages dominate the bulk [>0.8 µm] size fraction, implying that a considerable part of the planktonic foraminifera community biomass has its origin in unknown lineages. Afer ~250 years of Linnean taxonomic work, >90% of the ocean’s biodiversity still appears to be undescribed1. -
Studies on the Motility of the Heliozoa I
y. Ceil sd. 3,231 -244 (1968) 231 Printed in Great Britain STUDIES ON THE MOTILITY OF THE HELIOZOA I. THE LOCOMOTION OF ACTINOSPHAERIUM EICHHORNI AND ACTINOPHRYS SP. C. WATTERS* Department of Biology, Princeton University, Princeton, New Jersey, U.S.A. SUMMARY Analysis of cine records indicates that the locomotion of Actinosphaerium eichhorni and Actinophrys sp. includes a definite rolling motion, in addition to evident horizontal and vertical displacements. Such movements could be correlated with significant changes in the lengths of supportive axopods, but not with axopodial rowing or sliding movements. The data also do not support a model of locomotion based simply on those systematic shifts in the cell's centre of gravity that would be caused by sequential collapse of supportive axopods. Although active bending of attached axopods cannot be discounted, locomotion would seem to result from forces generated between the cytosome and substratum by attached axopods undergoing changes in length. The observations suggest, moreover, that axopodial retraction is more important than elongation in the generation of motive force. It is proposed that the relative magnitude of each locomotory component is determined by the dimensional parameters of the particular species. As a consequence, changes in axopodial length can account for both the 'rolling' and 'gliding' behaviour reported in the literature. INTRODUCTION The sun animalcules, or Heliozoa as Haeckel (1866) named the group, are sarco- dines with spherical cytosomes and long, relatively thin and stable pseudopods (Figs. 4, 5). The heliozoan pseudopod, or axopod, has been of particular interest, since in some species it may reach a length of 500 /t (Barrett, 1958). -
Free-Living Protozoa in Drinking Water Supplies: Community Composition and Role As Hosts for Legionella Pneumophila
Free-living protozoa in drinking water supplies: community composition and role as hosts for Legionella pneumophila Rinske Marleen Valster Thesis committee Thesis supervisor Prof. dr. ir. D. van der Kooij Professor of Environmental Microbiology Wageningen University Principal Microbiologist KWR Watercycle Institute, Nieuwegein Thesis co-supervisor Prof. dr. H. Smidt Personal chair at the Laboratory of Microbiology Wageningen University Other members Dr. J. F. Loret, CIRSEE-Suez Environnement, Le Pecq, France Prof. dr. T. A. Stenstrom,¨ SIIDC, Stockholm, Sweden Dr. W. Hoogenboezem, The Water Laboratory, Haarlem Prof. dr. ir. M. H. Zwietering, Wageningen University This research was conducted under the auspices of the Graduate School VLAG. Free-living protozoa in drinking water supplies: community composition and role as hosts for Legionella pneumophila Rinske Marleen Valster Thesis submitted in fulfilment of the requirements for the degree of doctor at Wageningen University by the authority of the Rector Magnificus Prof. dr. M.J. Kropff, in the presence of the Thesis Committee appointed by the Academic Board to be defended in public on Monday 20 June 2011 at 11 a.m. in the Aula Rinske Marleen Valster Free-living protozoa in drinking water supplies: community composition and role as hosts for Legionella pneumophila, viii+186 pages. Thesis, Wageningen University, Wageningen, NL (2011) With references, with summaries in Dutch and English ISBN 978-90-8585-884-3 Abstract Free-living protozoa, which feed on bacteria, play an important role in the communities of microor- ganisms and invertebrates in drinking water supplies and in (warm) tap water installations. Several bacteria, including opportunistic human pathogens such as Legionella pneumophila, are able to sur- vive and replicate within protozoan hosts, and certain free-living protozoa are opportunistic human pathogens as well. -
Final Copy 2021 05 11 Scam
This electronic thesis or dissertation has been downloaded from Explore Bristol Research, http://research-information.bristol.ac.uk Author: Scambler, Ross D Title: Exploring the evolutionary relationships amongst eukaryote groups using comparative genomics, with a particular focus on the excavate taxa General rights Access to the thesis is subject to the Creative Commons Attribution - NonCommercial-No Derivatives 4.0 International Public License. A copy of this may be found at https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode This license sets out your rights and the restrictions that apply to your access to the thesis so it is important you read this before proceeding. Take down policy Some pages of this thesis may have been removed for copyright restrictions prior to having it been deposited in Explore Bristol Research. However, if you have discovered material within the thesis that you consider to be unlawful e.g. breaches of copyright (either yours or that of a third party) or any other law, including but not limited to those relating to patent, trademark, confidentiality, data protection, obscenity, defamation, libel, then please contact [email protected] and include the following information in your message: •Your contact details •Bibliographic details for the item, including a URL •An outline nature of the complaint Your claim will be investigated and, where appropriate, the item in question will be removed from public view as soon as possible. Exploring the evolutionary relationships amongst eukaryote groups using comparative genomics, with a particular focus on the excavate taxa Ross Daniel Scambler Supervisor: Dr. Tom A. Williams A dissertation submitted to the University of Bristol in accordance with the requirements for award of the degree of Master of Science (by research) in the Faculty of Life Sciences, Novem- ber 2020. -
Diversity, Phylogeny and Phylogeography of Free-Living Amoebae
School of Doctoral Studies in Biological Sciences University of South Bohemia in České Budějovice Faculty of Science Diversity, phylogeny and phylogeography of free-living amoebae Ph.D. Thesis RNDr. Tomáš Tyml Supervisor: Mgr. Martin Kostka, Ph.D. Department of Parasitology, Faculty of Science, University of South Bohemia in České Budějovice Specialist adviser: Prof. MVDr. Iva Dyková, Dr.Sc. Department of Botany and Zoology, Faculty of Science, Masaryk University České Budějovice 2016 This thesis should be cited as: Tyml, T. 2016. Diversity, phylogeny and phylogeography of free living amoebae. Ph.D. Thesis Series, No. 13. University of South Bohemia, Faculty of Science, School of Doctoral Studies in Biological Sciences, České Budějovice, Czech Republic, 135 pp. Annotation This thesis consists of seven published papers on free-living amoebae (FLA), members of Amoebozoa, Excavata: Heterolobosea, and Cercozoa, and covers three main topics: (i) FLA as potential fish pathogens, (ii) diversity and phylogeography of FLA, and (iii) FLA as hosts of prokaryotic organisms. Diverse methodological approaches were used including culture-dependent techniques for isolation and identification of free-living amoebae, molecular phylogenetics, fluorescent in situ hybridization, and transmission electron microscopy. Declaration [in Czech] Prohlašuji, že svoji disertační práci jsem vypracoval samostatně pouze s použitím pramenů a literatury uvedených v seznamu citované literatury. Prohlašuji, že v souladu s § 47b zákona č. 111/1998 Sb. v platném znění souhlasím se zveřejněním své disertační práce, a to v úpravě vzniklé vypuštěním vyznačených částí archivovaných Přírodovědeckou fakultou elektronickou cestou ve veřejně přístupné části databáze STAG provozované Jihočeskou univerzitou v Českých Budějovicích na jejích internetových stránkách, a to se zachováním mého autorského práva k odevzdanému textu této kvalifikační práce. -
Freshwater Silica-Scaled Heterotrophic Protista: Heliozoa, Thaumatomonad Flagellates, Amoebae, and Bicosoecids, from the Lake Itasca Region, Minnesota
JOURNAL OF THE MINNESOTA ACADEMY OF SCIENCE VOL. 78 NO. 2 (2015) FRESHWATER SILICA-SCALED HETEROTROPHIC PROTISTA: HELIOZOA, THAUMATOMONAD FLAGELLATES, AMOEBAE, AND BICOSOECIDS, FROM THE LAKE ITASCA REGION, MINNESOTA Daniel E. Wujek Central Michigan University, Mt. Pleasant, MI Forty-nine plankton samples were collected from the Lake Itasca Region, Minnesota over a period sporadically covering the summers of 1980, 1981 and 1987. A total of 22 freshwater heterotrophic siliceous-scaled species were observed: 18 heliozoa, two thaumatomonad flagellates, one bicosoecid, and one testate amoeba. Scale identifications were based on transmission electron microscopy. New records for North America include two heliozoans and one thaumatomonad flagellate. Five heliozoa taxa and one thaumatomonad flagellate are new records for the U.S. Wujek DE. Freshwater silica-scaled heterotrophic protista: heliozoa, thaumatomonad flagellates, amoebae, and bicosoecids, from the Lake Itasca Region, Minnesota. Minnesota Academy of Science Journal. 2015; 78(2):1-14. Keywords: bicosoecids, heliozoa, protista, testate amoeba, thaumatomonad flagellates Daniel E Wujek, Department of Biology, Central microscopy (EM) usually is necessary to distinguish Michigan University, Mt. Pleasant, MI 48859, e- sufficient morphology for species identification in the mail: [email protected]. scaled chrysophyte groups3 and now have become the This study was in part funded by a grant from the tool for other scaled protists. CMU FRCE committee. North American heterotrophic protist studies -
New Freshwater Species of Centrohelids Acanthocystis Lyra Sp. Nov. and Acanthocystis Siemensmae Sp. Nov.(Haptista, Heliozoa, Centrohelea) from the South Urals, Russia
Acta Protozool. (2016) 55: 231–237 www.ejournals.eu/Acta-Protozoologica ACTA doi:10.4467/16890027AP.16.024.6011 PROTOZOOLOGICA New Freshwater Species of Centrohelids Acanthocystis lyra sp. nov. and Acanthocystis siemensmae sp. nov. (Haptista, Heliozoa, Centrohelea) from the South Urals, Russia Elena A. GERASIMOVA1,2, Andrey O. PLOTNIKOV1,3 1 Center of Shared Scientific Equipment “Persistence of microorganisms”, Institute for Cellular and Intracellular Symbiosis UB RAS, Orenburg, Russia; 2 Laboratory of Water Microbiology, I.D. Papanin Institute for Biology of Inland Waters RAS, Borok, Russia; 3 Department of Hygiene and Epidemiology, Orenburg State Medical University, Orenburg, Russia Abstract. Two new species of centrohelids Acanthocystis lyra sp. nov. and A. siemensmae sp. nov. from the Pismenka River in the South Urals, Russia, have been studied with scanning electron microscopy. Cells of these species have both long and short spine scales with hollow shafts and circular basal plates. A. lyra has the long spine scales divided into two curved S-shaped branches possessing small teeth on their inner surface. The short spine scales have primary and secondary bifurcations. Every secondary branch ends with two teeth. A. siemensmae has both long and short scales with funnel-like apices, which possess small teeth. Based on the scale morphology A. lyra has been attributed to the A. turfacea species group, whereas A. siemensmae has been attributed to the A. pectinata species group, both according to classifica- tion proposed by Mikrjukov, 1997. Similarities and differences of the new species with other members of the genus Acanthocystis have been discussed. Key words: Heliozoa, Centrohelids, Acanthocystis, protists, SEM, taxonomy. -
Sea Ice As a Habitat for Micrograzers
k CHAPTER 15 Sea ice as a habitat for micrograzers David A. Caron,1 Rebecca J. Gast2 and Marie-Ève Garneau1 1Department of Biological Sciences, University of Southern California, Los Angeles, CA, USA 2Department of Biology, Woods Hole Oceanographic Institution, Woods Hole, MA, USA 15.1 Introduction biomass are single-celled eukaryotic microorganisms displaying heterotrophic ability, usually phagotrophy, Sea ice makes up a physically complex, geographically which is the engulfment of food particles. The term extensive, but often seasonally ephemeral biome on ‘protozoa’ has traditionally been employed and is Earth. Despite the extremely harsh environmental still commonly used to describe these species, but conditions under which it forms and exists for much of wholesale revision of the evolutionary relationships the year, sea ice can serve as a suitable, even favourable, among eukaryotic taxa throughout the past decade (Adl habitat for dense assemblages of microorganisms. Our et al., 2012), and greater understanding of the complex knowledge of the existence of high abundances of nutritional modes exhibited by single-celled eukaryotes microalgae (largely diatoms) in sea ice spans at least have called the accuracy of this term into question. a century, but for many years it remained unknown In particular, the traditional distinction between pho- whether these massive accumulations were composed totrophic protists (i.e. unicellular algae) and their heterotrophic counterparts (protozoa) presupposes that k of metabolically active or merely inactive cells brought k together through physical processes associated with phototrophy and heterotrophy are mutually exclu- ice formation. Work began approximately a quarter sive nutritional modes, but they are not. Technically, century ago started to fill this void in our knowledge of the word ‘protozoa’ adequately describes truly het- sea ice microbiota. -
The Phagotrophic Origin of Eukaryotes and Phylogenetic Classification Of
International Journal of Systematic and Evolutionary Microbiology (2002), 52, 297–354 DOI: 10.1099/ijs.0.02058-0 The phagotrophic origin of eukaryotes and phylogenetic classification of Protozoa Department of Zoology, T. Cavalier-Smith University of Oxford, South Parks Road, Oxford OX1 3PS, UK Tel: j44 1865 281065. Fax: j44 1865 281310. e-mail: tom.cavalier-smith!zoo.ox.ac.uk Eukaryotes and archaebacteria form the clade neomura and are sisters, as shown decisively by genes fragmented only in archaebacteria and by many sequence trees. This sisterhood refutes all theories that eukaryotes originated by merging an archaebacterium and an α-proteobacterium, which also fail to account for numerous features shared specifically by eukaryotes and actinobacteria. I revise the phagotrophy theory of eukaryote origins by arguing that the essentially autogenous origins of most eukaryotic cell properties (phagotrophy, endomembrane system including peroxisomes, cytoskeleton, nucleus, mitosis and sex) partially overlapped and were synergistic with the symbiogenetic origin of mitochondria from an α-proteobacterium. These radical innovations occurred in a derivative of the neomuran common ancestor, which itself had evolved immediately prior to the divergence of eukaryotes and archaebacteria by drastic alterations to its eubacterial ancestor, an actinobacterial posibacterium able to make sterols, by replacing murein peptidoglycan by N-linked glycoproteins and a multitude of other shared neomuran novelties. The conversion of the rigid neomuran wall into a flexible surface coat and the associated origin of phagotrophy were instrumental in the evolution of the endomembrane system, cytoskeleton, nuclear organization and division and sexual life-cycles. Cilia evolved not by symbiogenesis but by autogenous specialization of the cytoskeleton.