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Rhizaria, Cercozoa)
Protist, Vol. 166, 363–373, July 2015 http://www.elsevier.de/protis Published online date 28 May 2015 ORIGINAL PAPER Molecular Phylogeny of the Widely Distributed Marine Protists, Phaeodaria (Rhizaria, Cercozoa) a,1 a a b Yasuhide Nakamura , Ichiro Imai , Atsushi Yamaguchi , Akihiro Tuji , c d Fabrice Not , and Noritoshi Suzuki a Plankton Laboratory, Graduate School of Fisheries Sciences, Hokkaido University, Hakodate, Hokkaido 041–8611, Japan b Department of Botany, National Museum of Nature and Science, Tsukuba 305–0005, Japan c CNRS, UMR 7144 & Université Pierre et Marie Curie, Station Biologique de Roscoff, Equipe EPPO - Evolution du Plancton et PaléoOcéans, Place Georges Teissier, 29682 Roscoff, France d Institute of Geology and Paleontology, Graduate School of Science, Tohoku University, Sendai 980–8578, Japan Submitted January 1, 2015; Accepted May 19, 2015 Monitoring Editor: David Moreira Phaeodarians are a group of widely distributed marine cercozoans. These plankton organisms can exhibit a large biomass in the environment and are supposed to play an important role in marine ecosystems and in material cycles in the ocean. Accurate knowledge of phaeodarian classification is thus necessary to better understand marine biology, however, phylogenetic information on Phaeodaria is limited. The present study analyzed 18S rDNA sequences encompassing all existing phaeodarian orders, to clarify their phylogenetic relationships and improve their taxonomic classification. The mono- phyly of Phaeodaria was confirmed and strongly supported by phylogenetic analysis with a larger data set than in previous studies. The phaeodarian clade contained 11 subclades which generally did not correspond to the families and orders of the current classification system. Two families (Challengeri- idae and Aulosphaeridae) and two orders (Phaeogromida and Phaeocalpida) are possibly polyphyletic or paraphyletic, and consequently the classification needs to be revised at both the family and order levels by integrative taxonomy approaches. -
Amoebozoa) and Peatland Mosses
Old Lineages in a New Ecosystem: Diversification of Arcellinid Amoebae (Amoebozoa) and Peatland Mosses Omar Fiz-Palacios1*., Brian S. Leander2, Thierry J. Heger2. 1 Systematic Biology Program, Department of Organismal Biology, Evolutionary Biology Centre, Uppsala, Sweden, 2 Biodiversity Research Center, Departments of Zoology and Botany, University of British Columbia, Vancouver, BC, Canada Abstract Arcellinid testate amoebae (Amoebozoa) form a group of free-living microbial eukaryotes with one of the oldest fossil records known, yet several aspects of their evolutionary history remain poorly understood. Arcellinids occur in a range of terrestrial, freshwater and even brackish habitats; however, many arcellinid morphospecies such as Hyalosphenia papilio are particularly abundant in Sphagnum-dominated peatlands, a relatively new ecosystem that appeared during the diversification of Sphagnum species in the Miocene (5–20 Myr ago). Here, we reconstruct divergence times in arcellinid testate amoebae after selecting several fossils for clock calibrations and then infer whether or not arcellinids followed a pattern of diversification that parallels the pattern described for Sphagnum. We found that the diversification of core arcellinids occurred during the Phanerozoic, which is congruent with most arcellinid fossils but not with the oldest known amoebozoan fossil (i.e. at ca. 662 or ca. 750 Myr). Overall, Sphagnum and the Hyalospheniidae exhibit different patterns of diversification. However, an extensive molecular phylogenetic analysis of distinct clades within H. papilio species complex demonstrated a correlation between the recent diversification of H. papilio, the recent diversification of Sphagnum mosses, and the establishment of peatlands. Citation: Fiz-Palacios O, Leander BS, Heger TJ (2014) Old Lineages in a New Ecosystem: Diversification of Arcellinid Amoebae (Amoebozoa) and Peatland Mosses. -
A Revised Classification of Naked Lobose Amoebae (Amoebozoa
Protist, Vol. 162, 545–570, October 2011 http://www.elsevier.de/protis Published online date 28 July 2011 PROTIST NEWS A Revised Classification of Naked Lobose Amoebae (Amoebozoa: Lobosa) Introduction together constitute the amoebozoan subphy- lum Lobosa, which never have cilia or flagella, Molecular evidence and an associated reevaluation whereas Variosea (as here revised) together with of morphology have recently considerably revised Mycetozoa and Archamoebea are now grouped our views on relationships among the higher-level as the subphylum Conosa, whose constituent groups of amoebae. First of all, establishing the lineages either have cilia or flagella or have lost phylum Amoebozoa grouped all lobose amoe- them secondarily (Cavalier-Smith 1998, 2009). boid protists, whether naked or testate, aerobic Figure 1 is a schematic tree showing amoebozoan or anaerobic, with the Mycetozoa and Archamoe- relationships deduced from both morphology and bea (Cavalier-Smith 1998), and separated them DNA sequences. from both the heterolobosean amoebae (Page and The first attempt to construct a congruent molec- Blanton 1985), now belonging in the phylum Per- ular and morphological system of Amoebozoa by colozoa - Cavalier-Smith and Nikolaev (2008), and Cavalier-Smith et al. (2004) was limited by the the filose amoebae that belong in other phyla lack of molecular data for many amoeboid taxa, (notably Cercozoa: Bass et al. 2009a; Howe et al. which were therefore classified solely on morpho- 2011). logical evidence. Smirnov et al. (2005) suggested The phylum Amoebozoa consists of naked and another system for naked lobose amoebae only; testate lobose amoebae (e.g. Amoeba, Vannella, this left taxa with no molecular data incertae sedis, Hartmannella, Acanthamoeba, Arcella, Difflugia), which limited its utility. -
Radiozoa (Acantharia, Phaeodaria and Radiolaria) and Heliozoa
MICC16 26/09/2005 12:21 PM Page 188 CHAPTER 16 Radiozoa (Acantharia, Phaeodaria and Radiolaria) and Heliozoa Cavalier-Smith (1987) created the phylum Radiozoa to Radiating outwards from the central capsule are the include the marine zooplankton Acantharia, Phaeodaria pseudopodia, either as thread-like filopodia or as and Radiolaria, united by the presence of a central axopodia, which have a central rod of fibres for rigid- capsule. Only the Radiolaria including the siliceous ity. The ectoplasm typically contains a zone of frothy, Polycystina (which includes the orders Spumellaria gelatinous bubbles, collectively termed the calymma and Nassellaria) and the mixed silica–organic matter and a swarm of yellow symbiotic algae called zooxan- Phaeodaria are preserved in the fossil record. The thellae. The calymma in some spumellarian Radiolaria Acantharia have a skeleton of strontium sulphate can be so extensive as to obscure the skeleton. (i.e. celestine SrSO4). The radiolarians range from the A mineralized skeleton is usually present within the Cambrian and have a virtually global, geographical cell and comprises, in the simplest forms, either radial distribution and a depth range from the photic zone or tangential elements, or both. The radial elements down to the abyssal plains. Radiolarians are most useful consist of loose spicules, external spines or internal for biostratigraphy of Mesozoic and Cenozoic deep sea bars. They may be hollow or solid and serve mainly to sediments and as palaeo-oceanographical indicators. support the axopodia. The tangential elements, where Heliozoa are free-floating protists with roughly present, generally form a porous lattice shell of very spherical shells and thread-like pseudopodia that variable morphology, such as spheres, spindles and extend radially over a delicate silica endoskeleton. -
Seasonal and Spatial Variability of Planktonic Heliozoa in Lake Constance
I AQUATIC MICROBIAL ECOLOGY I Vol. 11: 21-29, 1996 Published August 29 Aquat Microb Ecol I i I Seasonal and spatial variability of planktonic heliozoa in Lake Constance Uwe Zimmermann*, Helga Miiller**,Thomas Weisse*** Lirnnological Institute, University of Konstanz, PO Box 5560, D-78434 Konstanz, Germany ABSTRACT: Planktonic heliozoa were investigated at a mid-lake and an inshore station in Lake Constance (Germany)from April to November 1993. Integrated water samples were taken over 0 to 8 m and 8 to 20 m depth intervals at the deep mid-lake station and over 0 to 2 m depth at the shallow inshore station. Heliozoans were counted and identified to genus level in live samples. The following genera were identified: Actinophrys, Raphidocystis, Heterophrys, Chlarnydaster, Choanocystis, Raphidiophrys, and Pterocystis. Small heliozoans (10 to 20 pm, mainly Heterophrys and Choanocystis) generally dominated the con~n~unityin terms of abundance. Large genera (Actinophrys, Raphidocystis) were, however, the major contributors to total biovolume. Total cell concentrations remained below detection limits from April to mid-June. Maxima of up to 6.6 ind. ml-' were observed in summer; smaller peaks occurred in autumn. Heliozoan cell numbers were significantly positively correlated wth chlorophyll a concentration close to the surface. Negative trends were found in relation to potential heliozoan competitors or predators such as rotifers and crustacea. Community biovolumes of up to 60 mm3 m-3 were recorded in mid-summer The seasonal succession of the dominant genera was sirni- lar at both stations. The vertical distribution of heliozoans, examined on 2 occasions in summer and autumn, was positively correlated with chlorophyll a and temperature. -
New Phylogenomic Analysis of the Enigmatic Phylum Telonemia Further Resolves the Eukaryote Tree of Life
bioRxiv preprint doi: https://doi.org/10.1101/403329; this version posted August 30, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. New phylogenomic analysis of the enigmatic phylum Telonemia further resolves the eukaryote tree of life Jürgen F. H. Strassert1, Mahwash Jamy1, Alexander P. Mylnikov2, Denis V. Tikhonenkov2, Fabien Burki1,* 1Department of Organismal Biology, Program in Systematic Biology, Uppsala University, Uppsala, Sweden 2Institute for Biology of Inland Waters, Russian Academy of Sciences, Borok, Yaroslavl Region, Russia *Corresponding author: E-mail: [email protected] Keywords: TSAR, Telonemia, phylogenomics, eukaryotes, tree of life, protists bioRxiv preprint doi: https://doi.org/10.1101/403329; this version posted August 30, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract The broad-scale tree of eukaryotes is constantly improving, but the evolutionary origin of several major groups remains unknown. Resolving the phylogenetic position of these ‘orphan’ groups is important, especially those that originated early in evolution, because they represent missing evolutionary links between established groups. Telonemia is one such orphan taxon for which little is known. The group is composed of molecularly diverse biflagellated protists, often prevalent although not abundant in aquatic environments. -
Arcellinida Testate Amoebae (Amoebozoa: Arcellinida): Model of Organisms for Assessing Microbial Biogeography
1 Arcellinida testate amoebae (Amoebozoa: Arcellinida): model of organisms for assessing microbial biogeography T h i e r r y J . H e g e r , E n r i q u e L a r a , E d w a r d A . D . M i t c h e l l 1 WSL, Swiss Federal Institute for Forest, Snow and Landscape Research, Ecosystem Boundaries Research Unit, Wetlands Research Group, Lausanne, Switzerland; Laboratory of Ecological Systems, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland; Department of Zoology and Animal Biology, University of Geneva,Switzerland; and Biodiversity Research Center, University of British Columbia, Vancouver, Canada 2 Institute of Biology, Laboratory of Soil Biology, University of Neuchâtel, Switzerland 7.1 Introduction Although widely recognised as essential participants in ecosystem processes and representing a signifi cant part of the Earth’s biodiversity (Clarholm, 1985 ; Corliss, 2002; Schröter et al., 2003 ; Falkowski et al., 2004 ), eukaryotic microorganisms are very poorly understood from evolutionary and biogeographic points of view. Major questions concerning the diversity and the distribution of protists remain 2 completely unresolved. Arcellinida testate amoebae are an excellent group from which to get insights into these questions because they are easy to collect, pre- sent in diff erent habitats and they build a shell of characteristic morphology that remains even after the organism’s death. In this group, both cosmopolitan and restricted distribution patterns have been documented. Some morphospecies such as Apodera vas(=Nebela vas) , Alocodera cockayni or the whole genus Certesella have been reported as one of the most convincing examples of heterotrophic protist s with restricted distributions (Foissner, 2006 ; Smith and Wilkinson, 2007 ; Smith et al., 2008 ). -
Volume 2, Chapter 2-3 Protozoa: Rhizopod Diversity
Glime, J. M. 2017. Protozoa: Rhizopod Diversity. Chapt. 2-3. In: Glime, J. M. Bryophyte Ecology. Volume 2. Bryological 2-3-1 Interaction.Ebook sponsored by Michigan Technological University and the International Association of Bryologists. Last updated and available at <http://digitalcommons.mtu.edu/bryophyte-ecology2/>. CHAPTER 2-3 PROTOZOA: RHIZOPOD DIVERSITY TABLE OF CONTENTS Rhizopoda (Amoebas) ......................................................................................................................................... 2-3-2 Species Diversity ................................................................................................................................................. 2-3-4 Summary ........................................................................................................................................................... 2-3-14 Acknowledgments ............................................................................................................................................. 2-3-14 Literature Cited ................................................................................................................................................. 2-3-14 2-3-2 Chapter 2-3: Protozoa: Rhizopod Diversity CHAPTER 2-3 PROTOZOA: RHIZOPOD DIVERSITY Figure 1. Arcella vulgaris, a testate amoeba (Rhizopoda) that is dividing. Photo by Yuuji Tsukii, with permission. Rhizopoda (Amoebas) The Rhizopoda are a phylum of protozoa with a name that literally means "root feet" (Figure 1). They include both -
Surface Ocean Metabarcoding Confirms Limited Diversity in Planktonic Foraminifera but Reveals Unknown Hyper-Abundant Lineages
www.nature.com/scientificreports OPEN Surface ocean metabarcoding confrms limited diversity in planktonic foraminifera but reveals Received: 19 July 2017 Accepted: 24 January 2018 unknown hyper-abundant lineages Published: xx xx xxxx Raphaël Morard1,2, Marie-José Garet-Delmas2, Frédéric Mahé3, Sarah Romac2, Julie Poulain4, Michal Kucera1 & Colomban de Vargas2 Since the advent of DNA metabarcoding surveys, the planktonic realm is considered a treasure trove of diversity, inhabited by a small number of abundant taxa, and a hugely diverse and taxonomically uncharacterized consortium of rare species. Here we assess if the apparent underestimation of plankton diversity applies universally. We target planktonic foraminifera, a group of protists whose known morphological diversity is limited, taxonomically resolved and linked to ribosomal DNA barcodes. We generated a pyrosequencing dataset of ~100,000 partial 18S rRNA foraminiferal sequences from 32 size fractioned photic-zone plankton samples collected at 8 stations in the Indian and Atlantic Oceans during the Tara Oceans expedition (2009–2012). We identifed 69 genetic types belonging to 41 morphotaxa in our metabarcoding dataset. The diversity saturated at local and regional scale as well as in the three size fractions and the two depths sampled indicating that the diversity of foraminifera is modest and fnite. The large majority of the newly discovered lineages occur in the small size fraction, neglected by classical taxonomy. These unknown lineages dominate the bulk [>0.8 µm] size fraction, implying that a considerable part of the planktonic foraminifera community biomass has its origin in unknown lineages. Afer ~250 years of Linnean taxonomic work, >90% of the ocean’s biodiversity still appears to be undescribed1. -
Amoebozoa) Is Congruent with Test Size and Metabolism Type
Phylogenetic divergence within the Arcellinida (Amoebozoa) is congruent with test size and metabolism type. Macumber, A., Blandenier, Q., Todorov, M., Duckert, C., Lara, E., Lahr, D., Mitchell, E., & Roe, H. (2019). Phylogenetic divergence within the Arcellinida (Amoebozoa) is congruent with test size and metabolism type. European Journal of Protistology. https://doi.org/10.1016/j.ejop.2019.125645 Published in: European Journal of Protistology Document Version: Peer reviewed version Queen's University Belfast - Research Portal: Link to publication record in Queen's University Belfast Research Portal Publisher rights Copyright 2019 Elsevier. This manuscript is distributed under a Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/), which permits distribution and reproduction for non-commercial purposes, provided the author and source are cited. General rights Copyright for the publications made accessible via the Queen's University Belfast Research Portal is retained by the author(s) and / or other copyright owners and it is a condition of accessing these publications that users recognise and abide by the legal requirements associated with these rights. Take down policy The Research Portal is Queen's institutional repository that provides access to Queen's research output. Every effort has been made to ensure that content in the Research Portal does not infringe any person's rights, or applicable UK laws. If you discover content in the Research Portal that you believe breaches copyright or violates any law, please contact [email protected]. Download date:03. mar. 2021 1 Title: 2 3 Phylogenetic divergence within the Arcellinida (Amoebozoa) is congruent with test size 4 and metabolism type 5 6 Author Names: 7 8 Andrew L. -
Report Structure
KACHCHH SUB-STATE BIODIVERSITY STRATEGY AND ACTION PLAN PREPARED UNDER THE NATIONAL BIODIVERSITY STRATEGY AND ACTION PLAN- INDIA Gujarat Institute of Desert Ecology Bhuj, Kachchh 2002 Dedicated to The Undying Spirit of People of Kachchh KACHCHH SUB-STATE BIODIVERSITY STRATEGY AND ACTION PLAN PREPARED UNDER THE NATIONAL BIODIVERSITY STRATEGY AND ACTION PLAN- INDIA Gujarat Institute of Desert Ecology P. O. Box # 83, Opp. Changleshwar Temple, Mundra Road, Bhuj (Kachchh) Ph. (02832) 32160-61; Fax: 32162 2002 NBSAP Executing Agency: Ministry of Environment and Forests, Government of India NBSAP Funding Agency: United Nations Development Programme (UNDP)/ Global Environment Facility NBSAP Technical Implementing Agency: Technical and Policy Core Group (TPCG) Coordinated by Kalpvriksh NBSAP Administrative Agency: Biotech Consortium India Ltd. Kachchh BSAP Nodal Agency: Gujarat Institute of Desert Ecology, Bhuj (Kachchh) TPCG Member Associated: Ms. Seema Bhatt, Dr. Ravi Chellam Local Advisory Committee Members (27): Prof. Y.D. Singh, Mr. K.C. Shroff, Mr. Himmatsinhji, Conservator of Forests (Kachchh), Deputy Conservator of Forests (Kachchh West), Deputy Conservator of Forests (Kachchh East), Ms. Sushma Iyenger, Mr. Sandeep Virmani, Dr. Nipun Bhuch, Dr. Arun Mani Dixit, Mr. Dinesh Bhai Sanghvi, Mr. Raisingh Rathod, Mr. Fakir Mohammad Turk, Ms. Sahnaz Saiyad, Dr. Justus Joshua, Mr. Shailesh Vyas, Mr. Ishwarlal Patel, Dr. G.A. Thivakaran, Mr. Dalpatbhai Dhandaria, Prof. R. S. Dodiya, Mr. Ravibhai Soni, Mr. Navin Bapat, Mr. H.L. Lalka, Ms. Bharti Nanjar, Mr. A.E. Rao, Mr. Anup Kumar Gupta, Mr. Devjibhai Dhamecha Nodal Person: Dr. Arun Mani Dixit E-mail: [email protected] Suggested Citation: Gujarat Institute of Desert Ecology (2002). Kachchh Sub-State Biodiversity Strategy and Action Plan. -
Studies on the Motility of the Heliozoa I
y. Ceil sd. 3,231 -244 (1968) 231 Printed in Great Britain STUDIES ON THE MOTILITY OF THE HELIOZOA I. THE LOCOMOTION OF ACTINOSPHAERIUM EICHHORNI AND ACTINOPHRYS SP. C. WATTERS* Department of Biology, Princeton University, Princeton, New Jersey, U.S.A. SUMMARY Analysis of cine records indicates that the locomotion of Actinosphaerium eichhorni and Actinophrys sp. includes a definite rolling motion, in addition to evident horizontal and vertical displacements. Such movements could be correlated with significant changes in the lengths of supportive axopods, but not with axopodial rowing or sliding movements. The data also do not support a model of locomotion based simply on those systematic shifts in the cell's centre of gravity that would be caused by sequential collapse of supportive axopods. Although active bending of attached axopods cannot be discounted, locomotion would seem to result from forces generated between the cytosome and substratum by attached axopods undergoing changes in length. The observations suggest, moreover, that axopodial retraction is more important than elongation in the generation of motive force. It is proposed that the relative magnitude of each locomotory component is determined by the dimensional parameters of the particular species. As a consequence, changes in axopodial length can account for both the 'rolling' and 'gliding' behaviour reported in the literature. INTRODUCTION The sun animalcules, or Heliozoa as Haeckel (1866) named the group, are sarco- dines with spherical cytosomes and long, relatively thin and stable pseudopods (Figs. 4, 5). The heliozoan pseudopod, or axopod, has been of particular interest, since in some species it may reach a length of 500 /t (Barrett, 1958).