Volume 2, Chapter 2-3 Protozoa: Rhizopod Diversity
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Novaya Zemlya Archipelago (Russian Arctic)
This is a repository copy of First records of testate amoebae from the Novaya Zemlya archipelago (Russian Arctic). White Rose Research Online URL for this paper: http://eprints.whiterose.ac.uk/127196/ Version: Accepted Version Article: Mazei, Yuri, Tsyganov, Andrey N, Chernyshov, Viktor et al. (2 more authors) (2018) First records of testate amoebae from the Novaya Zemlya archipelago (Russian Arctic). Polar Biology. ISSN 0722-4060 https://doi.org/10.1007/s00300-018-2273-x Reuse Items deposited in White Rose Research Online are protected by copyright, with all rights reserved unless indicated otherwise. They may be downloaded and/or printed for private study, or other acts as permitted by national copyright laws. The publisher or other rights holders may allow further reproduction and re-use of the full text version. This is indicated by the licence information on the White Rose Research Online record for the item. Takedown If you consider content in White Rose Research Online to be in breach of UK law, please notify us by emailing [email protected] including the URL of the record and the reason for the withdrawal request. [email protected] https://eprints.whiterose.ac.uk/ 1 First records of testate amoebae from the Novaya Zemlya archipelago (Russian Arctic) 2 Yuri A. Mazei1,2, Andrey N. Tsyganov1, Viktor A. Chernyshov1, Alexander A. Ivanovsky2, Richard J. 3 Payne1,3* 4 1. Penza State University, Krasnaya str., 40, Penza 440026, Russia. 5 2. Lomonosov Moscow State University, Leninskiye Gory, 1, Moscow 119991, Russia. 6 3. University of York, Heslington, York YO10 5DD, United Kingdom. -
Testate Amoebae from South Vietnam Waterbodies with the Description of New Species Difflugia Vietnamicasp
Acta Protozool. (2018) 57: 215–229 www.ejournals.eu/Acta-Protozoologica ACTA doi:10.4467/16890027AP.18.016.10092 PROTOZOOLOGICA LSID urn:lsid:zoobank.org:pub:AEE9D12D-06BD-4539-AD97-87343E7FDBA3 Testate Amoebae from South Vietnam Waterbodies with the Description of New Species Difflugia vietnamicasp. nov. Hoan Q. TRANa, Yuri A. MAZEIb, c a Vietnamese-Russian Tropical Center, 63 Nguyen Van Huyen, Nghia Do, Cau Giay, Ha Noi, Vietnam b Department of Hydrobiology, Lomonosov Moscow State University, Moscow, Russia c Department of Zoology and Ecology, Penza State University, Penza, Russia Abstract. Testate amoebae in Vietnam are still poorly investigated. We studied species composition of testate amoebae in 47 waterbodies of South Vietnam provinces including natural lakes, reservoirs, wetlands, rivers, and irrigation channels. A total of 109 species and subspe- cies belonging to 16 genera, 9 families were identified from 191 samples. Thirty-five species and subspecies were observed in Vietnam for the first time. New speciesDifflugia vietnamica sp. nov. is described. The most species-rich genera are Difflugia (46 taxa), Arcella (25) and Centropyxis (14). Centropyxis aculeata was the most common species (observed in 68.1% samples). Centropyxis aerophila sphagniсola, Arcella discoides, Difflugia schurmanni and Lesquereusia modesta were characterised by a frequency of occurrence >20%. Other spe- cies were rarer. The species accumulation curve based on the entire dataset of this work was unsaturated and well fitted by equation S = 19.46N0.33. Species richness per sample in natural lakes and wetlands were significantly higher than that of rivers (p < 0.001). The result of the Spearman rank test shows weak or statistically insignificant relationships between species richness and water temperature, pH, dissolved oxygen, and electrical conductivity. -
Amoebozoa) and Peatland Mosses
Old Lineages in a New Ecosystem: Diversification of Arcellinid Amoebae (Amoebozoa) and Peatland Mosses Omar Fiz-Palacios1*., Brian S. Leander2, Thierry J. Heger2. 1 Systematic Biology Program, Department of Organismal Biology, Evolutionary Biology Centre, Uppsala, Sweden, 2 Biodiversity Research Center, Departments of Zoology and Botany, University of British Columbia, Vancouver, BC, Canada Abstract Arcellinid testate amoebae (Amoebozoa) form a group of free-living microbial eukaryotes with one of the oldest fossil records known, yet several aspects of their evolutionary history remain poorly understood. Arcellinids occur in a range of terrestrial, freshwater and even brackish habitats; however, many arcellinid morphospecies such as Hyalosphenia papilio are particularly abundant in Sphagnum-dominated peatlands, a relatively new ecosystem that appeared during the diversification of Sphagnum species in the Miocene (5–20 Myr ago). Here, we reconstruct divergence times in arcellinid testate amoebae after selecting several fossils for clock calibrations and then infer whether or not arcellinids followed a pattern of diversification that parallels the pattern described for Sphagnum. We found that the diversification of core arcellinids occurred during the Phanerozoic, which is congruent with most arcellinid fossils but not with the oldest known amoebozoan fossil (i.e. at ca. 662 or ca. 750 Myr). Overall, Sphagnum and the Hyalospheniidae exhibit different patterns of diversification. However, an extensive molecular phylogenetic analysis of distinct clades within H. papilio species complex demonstrated a correlation between the recent diversification of H. papilio, the recent diversification of Sphagnum mosses, and the establishment of peatlands. Citation: Fiz-Palacios O, Leander BS, Heger TJ (2014) Old Lineages in a New Ecosystem: Diversification of Arcellinid Amoebae (Amoebozoa) and Peatland Mosses. -
A Revised Classification of Naked Lobose Amoebae (Amoebozoa
Protist, Vol. 162, 545–570, October 2011 http://www.elsevier.de/protis Published online date 28 July 2011 PROTIST NEWS A Revised Classification of Naked Lobose Amoebae (Amoebozoa: Lobosa) Introduction together constitute the amoebozoan subphy- lum Lobosa, which never have cilia or flagella, Molecular evidence and an associated reevaluation whereas Variosea (as here revised) together with of morphology have recently considerably revised Mycetozoa and Archamoebea are now grouped our views on relationships among the higher-level as the subphylum Conosa, whose constituent groups of amoebae. First of all, establishing the lineages either have cilia or flagella or have lost phylum Amoebozoa grouped all lobose amoe- them secondarily (Cavalier-Smith 1998, 2009). boid protists, whether naked or testate, aerobic Figure 1 is a schematic tree showing amoebozoan or anaerobic, with the Mycetozoa and Archamoe- relationships deduced from both morphology and bea (Cavalier-Smith 1998), and separated them DNA sequences. from both the heterolobosean amoebae (Page and The first attempt to construct a congruent molec- Blanton 1985), now belonging in the phylum Per- ular and morphological system of Amoebozoa by colozoa - Cavalier-Smith and Nikolaev (2008), and Cavalier-Smith et al. (2004) was limited by the the filose amoebae that belong in other phyla lack of molecular data for many amoeboid taxa, (notably Cercozoa: Bass et al. 2009a; Howe et al. which were therefore classified solely on morpho- 2011). logical evidence. Smirnov et al. (2005) suggested The phylum Amoebozoa consists of naked and another system for naked lobose amoebae only; testate lobose amoebae (e.g. Amoeba, Vannella, this left taxa with no molecular data incertae sedis, Hartmannella, Acanthamoeba, Arcella, Difflugia), which limited its utility. -
The Revised Classification of Eukaryotes
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/231610049 The Revised Classification of Eukaryotes Article in Journal of Eukaryotic Microbiology · September 2012 DOI: 10.1111/j.1550-7408.2012.00644.x · Source: PubMed CITATIONS READS 961 2,825 25 authors, including: Sina M Adl Alastair Simpson University of Saskatchewan Dalhousie University 118 PUBLICATIONS 8,522 CITATIONS 264 PUBLICATIONS 10,739 CITATIONS SEE PROFILE SEE PROFILE Christopher E Lane David Bass University of Rhode Island Natural History Museum, London 82 PUBLICATIONS 6,233 CITATIONS 464 PUBLICATIONS 7,765 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Biodiversity and ecology of soil taste amoeba View project Predator control of diversity View project All content following this page was uploaded by Smirnov Alexey on 25 October 2017. The user has requested enhancement of the downloaded file. The Journal of Published by the International Society of Eukaryotic Microbiology Protistologists J. Eukaryot. Microbiol., 59(5), 2012 pp. 429–493 © 2012 The Author(s) Journal of Eukaryotic Microbiology © 2012 International Society of Protistologists DOI: 10.1111/j.1550-7408.2012.00644.x The Revised Classification of Eukaryotes SINA M. ADL,a,b ALASTAIR G. B. SIMPSON,b CHRISTOPHER E. LANE,c JULIUS LUKESˇ,d DAVID BASS,e SAMUEL S. BOWSER,f MATTHEW W. BROWN,g FABIEN BURKI,h MICAH DUNTHORN,i VLADIMIR HAMPL,j AARON HEISS,b MONA HOPPENRATH,k ENRIQUE LARA,l LINE LE GALL,m DENIS H. LYNN,n,1 HILARY MCMANUS,o EDWARD A. D. -
Arcellinida Testate Amoebae (Amoebozoa: Arcellinida): Model of Organisms for Assessing Microbial Biogeography
1 Arcellinida testate amoebae (Amoebozoa: Arcellinida): model of organisms for assessing microbial biogeography T h i e r r y J . H e g e r , E n r i q u e L a r a , E d w a r d A . D . M i t c h e l l 1 WSL, Swiss Federal Institute for Forest, Snow and Landscape Research, Ecosystem Boundaries Research Unit, Wetlands Research Group, Lausanne, Switzerland; Laboratory of Ecological Systems, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland; Department of Zoology and Animal Biology, University of Geneva,Switzerland; and Biodiversity Research Center, University of British Columbia, Vancouver, Canada 2 Institute of Biology, Laboratory of Soil Biology, University of Neuchâtel, Switzerland 7.1 Introduction Although widely recognised as essential participants in ecosystem processes and representing a signifi cant part of the Earth’s biodiversity (Clarholm, 1985 ; Corliss, 2002; Schröter et al., 2003 ; Falkowski et al., 2004 ), eukaryotic microorganisms are very poorly understood from evolutionary and biogeographic points of view. Major questions concerning the diversity and the distribution of protists remain 2 completely unresolved. Arcellinida testate amoebae are an excellent group from which to get insights into these questions because they are easy to collect, pre- sent in diff erent habitats and they build a shell of characteristic morphology that remains even after the organism’s death. In this group, both cosmopolitan and restricted distribution patterns have been documented. Some morphospecies such as Apodera vas(=Nebela vas) , Alocodera cockayni or the whole genus Certesella have been reported as one of the most convincing examples of heterotrophic protist s with restricted distributions (Foissner, 2006 ; Smith and Wilkinson, 2007 ; Smith et al., 2008 ). -
Amoebozoa) Is Congruent with Test Size and Metabolism Type
Phylogenetic divergence within the Arcellinida (Amoebozoa) is congruent with test size and metabolism type. Macumber, A., Blandenier, Q., Todorov, M., Duckert, C., Lara, E., Lahr, D., Mitchell, E., & Roe, H. (2019). Phylogenetic divergence within the Arcellinida (Amoebozoa) is congruent with test size and metabolism type. European Journal of Protistology. https://doi.org/10.1016/j.ejop.2019.125645 Published in: European Journal of Protistology Document Version: Peer reviewed version Queen's University Belfast - Research Portal: Link to publication record in Queen's University Belfast Research Portal Publisher rights Copyright 2019 Elsevier. This manuscript is distributed under a Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/), which permits distribution and reproduction for non-commercial purposes, provided the author and source are cited. General rights Copyright for the publications made accessible via the Queen's University Belfast Research Portal is retained by the author(s) and / or other copyright owners and it is a condition of accessing these publications that users recognise and abide by the legal requirements associated with these rights. Take down policy The Research Portal is Queen's institutional repository that provides access to Queen's research output. Every effort has been made to ensure that content in the Research Portal does not infringe any person's rights, or applicable UK laws. If you discover content in the Research Portal that you believe breaches copyright or violates any law, please contact [email protected]. Download date:03. mar. 2021 1 Title: 2 3 Phylogenetic divergence within the Arcellinida (Amoebozoa) is congruent with test size 4 and metabolism type 5 6 Author Names: 7 8 Andrew L. -
Report Structure
KACHCHH SUB-STATE BIODIVERSITY STRATEGY AND ACTION PLAN PREPARED UNDER THE NATIONAL BIODIVERSITY STRATEGY AND ACTION PLAN- INDIA Gujarat Institute of Desert Ecology Bhuj, Kachchh 2002 Dedicated to The Undying Spirit of People of Kachchh KACHCHH SUB-STATE BIODIVERSITY STRATEGY AND ACTION PLAN PREPARED UNDER THE NATIONAL BIODIVERSITY STRATEGY AND ACTION PLAN- INDIA Gujarat Institute of Desert Ecology P. O. Box # 83, Opp. Changleshwar Temple, Mundra Road, Bhuj (Kachchh) Ph. (02832) 32160-61; Fax: 32162 2002 NBSAP Executing Agency: Ministry of Environment and Forests, Government of India NBSAP Funding Agency: United Nations Development Programme (UNDP)/ Global Environment Facility NBSAP Technical Implementing Agency: Technical and Policy Core Group (TPCG) Coordinated by Kalpvriksh NBSAP Administrative Agency: Biotech Consortium India Ltd. Kachchh BSAP Nodal Agency: Gujarat Institute of Desert Ecology, Bhuj (Kachchh) TPCG Member Associated: Ms. Seema Bhatt, Dr. Ravi Chellam Local Advisory Committee Members (27): Prof. Y.D. Singh, Mr. K.C. Shroff, Mr. Himmatsinhji, Conservator of Forests (Kachchh), Deputy Conservator of Forests (Kachchh West), Deputy Conservator of Forests (Kachchh East), Ms. Sushma Iyenger, Mr. Sandeep Virmani, Dr. Nipun Bhuch, Dr. Arun Mani Dixit, Mr. Dinesh Bhai Sanghvi, Mr. Raisingh Rathod, Mr. Fakir Mohammad Turk, Ms. Sahnaz Saiyad, Dr. Justus Joshua, Mr. Shailesh Vyas, Mr. Ishwarlal Patel, Dr. G.A. Thivakaran, Mr. Dalpatbhai Dhandaria, Prof. R. S. Dodiya, Mr. Ravibhai Soni, Mr. Navin Bapat, Mr. H.L. Lalka, Ms. Bharti Nanjar, Mr. A.E. Rao, Mr. Anup Kumar Gupta, Mr. Devjibhai Dhamecha Nodal Person: Dr. Arun Mani Dixit E-mail: [email protected] Suggested Citation: Gujarat Institute of Desert Ecology (2002). Kachchh Sub-State Biodiversity Strategy and Action Plan. -
Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes
University of Rhode Island DigitalCommons@URI Biological Sciences Faculty Publications Biological Sciences 9-26-2018 Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes Christopher E. Lane Et Al Follow this and additional works at: https://digitalcommons.uri.edu/bio_facpubs Journal of Eukaryotic Microbiology ISSN 1066-5234 ORIGINAL ARTICLE Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes Sina M. Adla,* , David Bassb,c , Christopher E. Laned, Julius Lukese,f , Conrad L. Schochg, Alexey Smirnovh, Sabine Agathai, Cedric Berneyj , Matthew W. Brownk,l, Fabien Burkim,PacoCardenas n , Ivan Cepi cka o, Lyudmila Chistyakovap, Javier del Campoq, Micah Dunthornr,s , Bente Edvardsent , Yana Eglitu, Laure Guillouv, Vladimır Hamplw, Aaron A. Heissx, Mona Hoppenrathy, Timothy Y. Jamesz, Anna Karn- kowskaaa, Sergey Karpovh,ab, Eunsoo Kimx, Martin Koliskoe, Alexander Kudryavtsevh,ab, Daniel J.G. Lahrac, Enrique Laraad,ae , Line Le Gallaf , Denis H. Lynnag,ah , David G. Mannai,aj, Ramon Massanaq, Edward A.D. Mitchellad,ak , Christine Morrowal, Jong Soo Parkam , Jan W. Pawlowskian, Martha J. Powellao, Daniel J. Richterap, Sonja Rueckertaq, Lora Shadwickar, Satoshi Shimanoas, Frederick W. Spiegelar, Guifre Torruellaat , Noha Youssefau, Vasily Zlatogurskyh,av & Qianqian Zhangaw a Department of Soil Sciences, College of Agriculture and Bioresources, University of Saskatchewan, Saskatoon, S7N 5A8, SK, Canada b Department of Life Sciences, The Natural History Museum, Cromwell Road, London, SW7 5BD, United Kingdom -
Ecologia Balkanica
ECOLOGIA BALKANICA International Scientific Research Journal of Ecology Volume 4, Issue 1 June 2012 UNION OF SCIENTISTS IN BULGARIA – PLOVDIV UNIVERSITY OF PLOVDIV PUBLISHING HOUSE ii International Standard Serial Number Print ISSN 1314-0213; Online ISSN 1313-9940 Aim & Scope „Ecologia Balkanica” is an international scientific journal, in which original research articles in various fields of Ecology are published, including ecology and conservation of microorganisms, plants, aquatic and terrestrial animals, physiological ecology, behavioural ecology, population ecology, population genetics, community ecology, plant-animal interactions, ecosystem ecology, parasitology, animal evolution, ecological monitoring and bioindication, landscape and urban ecology, conservation ecology, as well as new methodical contributions in ecology. Studies conducted on the Balkans are a priority, but studies conducted in Europe or anywhere else in the World is accepted as well. Published by the Union of Scientists in Bulgaria – Plovdiv and the University of Plovdiv Publishing house – twice a year. Language: English. Peer review process All articles included in “Ecologia Balkanica” are peer reviewed. Submitted manuscripts are sent to two or three independent peer reviewers, unless they are either out of scope or below threshold for the journal. These manuscripts will generally be reviewed by experts with the aim of reaching a first decision as soon as possible. The journal uses the double anonymity standard for the peer-review process. Reviewers do not have to sign their reports and they do not know who the author(s) of the submitted manuscript are. We ask all authors to provide the contact details (including e-mail addresses) of at least four potential reviewers of their manuscript. -
(Protozoa: Rhizopoda) of the Genera Arcella and Difflugia from India
Journal on New Biological Reports ISSN 2319 – 1104 (Online) JNBR 5(1) 7 – 9 (2016) Published by www.researchtrend.net New records of testate amoebae (Protozoa: Rhizopoda) of the genera Arcella and Difflugia from India Bindu. L* and Jasmine Purushothaman** *Marine Biology Regional Centre, Zoological Survey of India, Chennai-600 028 **Zoological Survey of India, M-Block, New Alipore, Kolkata-700 053 *Corresponding author: [email protected] | Received: 06 January 2016 | Accepted: 29 February 2016 | ABSTRACT Two species of testate amoebae viz., Arcella excavata Cunningham, 1919 and Difflugia geosphaira Ogden, 1991are reported from Marakkanam and Coleron estuaries in Tamil Nadu and D. geosphaira also from Himachal Pradesh which are new records from India. Key Words: Testate amoebae, Arcella excavata, Difflugia geosphaira, Marakkanam estuary, Coleron estuary, Himachal Pradesh. INTRODUCTION Testate amoebae are a group of free-living already been reported from various states of India protozoans with a predominately anemochorous (Nair & Mukherjee, 1968; Mahajan, 1971; Das et way of dispersion. Most testacean species are al., 1993, 1995, 2000a, 2000b, 2003; Mishra et al., cosmopolitan. Arcella and Difflugia are the genera 1997; Bindu, 2013; Bindu et al., 2013; Bindu et al., of testate amoebae of the class Lobosea and the 2014) and Arcella excavata and Difflugia order Arcellinida. geosphaira are new records to India. These have Arcella is a genus of testate amoebae and been recorded from estuarine habitats of Tamil one of the largest and most common testacean Nadu and D. geosphaira is also recorded from genera. This genus was erected by Ehrenberg moss habitat of Himachal Pradesh. (1832) and the type species is Arcella vulgaris. -
Diversity, Phylogeny and Phylogeography of Free-Living Amoebae
School of Doctoral Studies in Biological Sciences University of South Bohemia in České Budějovice Faculty of Science Diversity, phylogeny and phylogeography of free-living amoebae Ph.D. Thesis RNDr. Tomáš Tyml Supervisor: Mgr. Martin Kostka, Ph.D. Department of Parasitology, Faculty of Science, University of South Bohemia in České Budějovice Specialist adviser: Prof. MVDr. Iva Dyková, Dr.Sc. Department of Botany and Zoology, Faculty of Science, Masaryk University České Budějovice 2016 This thesis should be cited as: Tyml, T. 2016. Diversity, phylogeny and phylogeography of free living amoebae. Ph.D. Thesis Series, No. 13. University of South Bohemia, Faculty of Science, School of Doctoral Studies in Biological Sciences, České Budějovice, Czech Republic, 135 pp. Annotation This thesis consists of seven published papers on free-living amoebae (FLA), members of Amoebozoa, Excavata: Heterolobosea, and Cercozoa, and covers three main topics: (i) FLA as potential fish pathogens, (ii) diversity and phylogeography of FLA, and (iii) FLA as hosts of prokaryotic organisms. Diverse methodological approaches were used including culture-dependent techniques for isolation and identification of free-living amoebae, molecular phylogenetics, fluorescent in situ hybridization, and transmission electron microscopy. Declaration [in Czech] Prohlašuji, že svoji disertační práci jsem vypracoval samostatně pouze s použitím pramenů a literatury uvedených v seznamu citované literatury. Prohlašuji, že v souladu s § 47b zákona č. 111/1998 Sb. v platném znění souhlasím se zveřejněním své disertační práce, a to v úpravě vzniklé vypuštěním vyznačených částí archivovaných Přírodovědeckou fakultou elektronickou cestou ve veřejně přístupné části databáze STAG provozované Jihočeskou univerzitou v Českých Budějovicích na jejích internetových stránkách, a to se zachováním mého autorského práva k odevzdanému textu této kvalifikační práce.