An Annotated Checklist of Fishes of Amami-Oshima Island, the Ryukyu Islands, Japan
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Status of Taal Lake Fishery Resources with Emphasis on the Endemic Freshwater Sardine, Sardinella Tawilis (Herre, 1927)
The Philippine Journal of Fisheries 25Volume (1): 128-135 24 (1-2): _____ January-June 2018 JanuaryDOI 10.31398/tpjf/25.1.2017C0017 - December 2017 Status of Taal Lake Fishery Resources with Emphasis on the Endemic Freshwater Sardine, Sardinella tawilis (Herre, 1927) Maria Theresa M. Mutia1,*, Myla C. Muyot1,, Francisco B. Torres Jr.1, Charice M. Faminialagao1 1National Fisheries Research and Development Institute, 101 Corporate Bldg., Mother Ignacia St., South Triangle, Quezon City ABSTRACT Assessment of fisheries in Taal Lake was conducted from 1996-2000 and 2008-2011 to know the status of the commercially important fishes with emphasis on the endemic freshwater sardine,Sardinella tawilis. Results of the fish landed catch survey in 11 coastal towns of the lake showed a decreasing fish harvest in the open fisheries from 1,420 MT to 460 MT in 1996 to 2011. Inventory of fisherfolk, boat, and gear also decreased to 16%, 7%, and 39%, respectively from 1998 to 2011. The most dominant gear is gill net which is about 53% of the total gear used in the lake with a declining catch per unit effort (CPUE) of 11kg/day to 4 kg/day from 1997 to 2011. Active gear such as motorized push net, ring net, and beach seine also operated in the lake with a CPUE ranging from 48 kg/day to 2,504 kg/day. There were 43 fish species identified in which S. tawilis dominated the catch for the last decade. However, its harvest also declined from 744 to 71 mt in 1996 to 2011. The presence of alien species such as jaguar fish, pangasius, and black-chinned tilapia amplified in 2009. -
Genetic Lineage of the Amami Islanders Inferred from Classical Genetic Markers
bioRxiv preprint doi: https://doi.org/10.1101/2021.04.18.440379; this version posted April 19, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Genetic lineage of the Amami islanders inferred from classical genetic markers Yuri Nishikawa and Takafumi Ishida Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan Correspondence: Yuri Nishikawa, Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Hongo 7-3-1, Bunkyo-ku, Tokyo 113-0033, Japan. E-mail address: [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.04.18.440379; this version posted April 19, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract The peopling of mainland Japan and Okinawa has been gradually unveiled in the recent years, but previous anthropological studies dealing people in the Amami islands, located between mainland Japan and Okinawa, were less informative because of the lack of genetic data. In this study, we collected DNAs from 104 subjects in two of the Amami islands, Amami-Oshima island and Kikai island, and analyzed the D-loop region of mtDNA, four Y-STRs and four autosomal nonsynonymous SNPs to clarify the genetic structure of the Amami islanders comparing with peoples in Okinawa, mainland Japan and other regions in East Asia. -
Restoration of the Native Species to Amami Oshima Island
alien species in Amami Oshima Island In addition to the Small Indian mongoose, many other alien species (e.g., feral cats, feral goats, black rats and the Lanceleaf tickseed) have become established on Amami Oshima. Please be sure never to leave behind alien species in the wild nor let them escape. Feral cat Feral goat Black rat Lanceleaf tickseed ● Alien species of Amami Islands HP http://kyushu.env.go.jp/naha/wildlife/data/130902aa.pdf We ask for your cooperation in The mongoose eradication project activity of Amami Mongoose Busters in Amami Oshima The Amami Mongoose Busters, which was formed in 2005, has continued its efforts to eradicate mongooses with the support of people in the island and researchers. We ask for your continued onservation of a precious understanding and support of the mongoose control project as C well as the Amami Mongoose Busters. ecosystem in ■ Amami Mongoose Busters Blog http://amb.amamin.jp/ ■ Amami Mongoose Busters Facebook Amami Oshima Island https://www.facebook.com/amamimongoosebusters March 2014 Amami Wildlife Conservation Center, Published by: Ministry of the Environment, Japan Naha Nature Conservation Office, 551 Koshinohata, Ongachi, Yamato-son, Oshima-gun, Ministry of the Environment, Japan Kagoshima 894-3104 TEL:+81-997-55-8620 Okinawa Tsukansha Building 4F, 5-21 Yamashita-cho, Japan Wildlife Research Center, Naha-shi, Okinawa 900-0027 Amami Ooshima Division (Amami Mongoose Busters) 1385-2 Naze, Uragami,Amami-City, Kagoshima 894-0008 TEL:+81-997-58-4013 Edited by : Japan Wildlife Research Center FOR ALL THE LIFE ON EARTH Design : artpost inc. Photos : Mamoru Tsuneda, Teruho Abe, Yoshihito Goto, Kazuki Yamamuro, Biodiversity Ryuta Yoshihara, Japan Wildlife Research Center Animals and plants Habu snake Protobothrops flavoviridis This poisonous snake is found on Amami Oshima, Tokunoshima, Okinawa in Amami Oshima Island Island, and other several neighboring small islands. -
Evolutionary Genomics of a Plastic Life History Trait: Galaxias Maculatus Amphidromous and Resident Populations
EVOLUTIONARY GENOMICS OF A PLASTIC LIFE HISTORY TRAIT: GALAXIAS MACULATUS AMPHIDROMOUS AND RESIDENT POPULATIONS by María Lisette Delgado Aquije Submitted in partial fulfilment of the requirements for the degree of Doctor of Philosophy at Dalhousie University Halifax, Nova Scotia August 2021 Dalhousie University is located in Mi'kma'ki, the ancestral and unceded territory of the Mi'kmaq. We are all Treaty people. © Copyright by María Lisette Delgado Aquije, 2021 I dedicate this work to my parents, María and José, my brothers JR and Eduardo for their unconditional love and support and for always encouraging me to pursue my dreams, and to my grandparents Victoria, Estela, Jesús, and Pepe whose example of perseverance and hard work allowed me to reach this point. ii TABLE OF CONTENTS LIST OF TABLES ............................................................................................................ vii LIST OF FIGURES ........................................................................................................... ix ABSTRACT ...................................................................................................................... xii LIST OF ABBREVIATION USED ................................................................................ xiii ACKNOWLEDGMENTS ................................................................................................ xv CHAPTER 1. INTRODUCTION ....................................................................................... 1 1.1 Galaxias maculatus .................................................................................................. -
Trait Decoupling Promotes Evolutionary Diversification of The
Trait decoupling promotes evolutionary diversification of the trophic and acoustic system of damselfishes rspb.royalsocietypublishing.org Bruno Fre´de´rich1, Damien Olivier1, Glenn Litsios2,3, Michael E. Alfaro4 and Eric Parmentier1 1Laboratoire de Morphologie Fonctionnelle et Evolutive, Applied and Fundamental Fish Research Center, Universite´ de Lie`ge, 4000 Lie`ge, Belgium 2Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland Research 3Swiss Institute of Bioinformatics, Ge´nopode, Quartier Sorge, 1015 Lausanne, Switzerland 4Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA Cite this article: Fre´de´rich B, Olivier D, Litsios G, Alfaro ME, Parmentier E. 2014 Trait decou- Trait decoupling, wherein evolutionary release of constraints permits special- pling promotes evolutionary diversification of ization of formerly integrated structures, represents a major conceptual the trophic and acoustic system of damsel- framework for interpreting patterns of organismal diversity. However, few fishes. Proc. R. Soc. B 281: 20141047. empirical tests of this hypothesis exist. A central prediction, that the tempo of morphological evolution and ecological diversification should increase http://dx.doi.org/10.1098/rspb.2014.1047 following decoupling events, remains inadequately tested. In damselfishes (Pomacentridae), a ceratomandibular ligament links the hyoid bar and lower jaws, coupling two main morphofunctional units directly involved in both feeding and sound production. Here, we test the decoupling hypothesis Received: 2 May 2014 by examining the evolutionary consequences of the loss of the ceratomandib- Accepted: 9 June 2014 ular ligament in multiple damselfish lineages. As predicted, we find that rates of morphological evolution of trophic structures increased following the loss of the ligament. -
The Genome of the Gulf Pipefish Enables Understanding of Evolutionary Innovations C
Small et al. Genome Biology (2016) 17:258 DOI 10.1186/s13059-016-1126-6 RESEARCH Open Access The genome of the Gulf pipefish enables understanding of evolutionary innovations C. M. Small1†, S. Bassham1†, J. Catchen1,2†, A. Amores3, A. M. Fuiten1, R. S. Brown1,4, A. G. Jones5 and W. A. Cresko1* Abstract Background: Evolutionary origins of derived morphologies ultimately stem from changes in protein structure, gene regulation, and gene content. A well-assembled, annotated reference genome is a central resource for pursuing these molecular phenomena underlying phenotypic evolution. We explored the genome of the Gulf pipefish (Syngnathus scovelli), which belongs to family Syngnathidae (pipefishes, seahorses, and seadragons). These fishes have dramatically derived bodies and a remarkable novelty among vertebrates, the male brood pouch. Results: We produce a reference genome, condensed into chromosomes, for the Gulf pipefish. Gene losses and other changes have occurred in pipefish hox and dlx clusters and in the tbx and pitx gene families, candidate mechanisms for the evolution of syngnathid traits, including an elongated axis and the loss of ribs, pelvic fins, and teeth. We measure gene expression changes in pregnant versus non-pregnant brood pouch tissue and characterize the genomic organization of duplicated metalloprotease genes (patristacins) recruited into the function of this novel structure. Phylogenetic inference using ultraconserved sequences provides an alternative hypothesis for the relationship between orders Syngnathiformes and Scombriformes. Comparisons of chromosome structure among percomorphs show that chromosome number in a pipefish ancestor became reduced via chromosomal fusions. Conclusions: The collected findings from this first syngnathid reference genome open a window into the genomic underpinnings of highly derived morphologies, demonstrating that de novo production of high quality and useful reference genomes is within reach of even small research groups. -
Reef Fishes of the Bird's Head Peninsula, West
Check List 5(3): 587–628, 2009. ISSN: 1809-127X LISTS OF SPECIES Reef fishes of the Bird’s Head Peninsula, West Papua, Indonesia Gerald R. Allen 1 Mark V. Erdmann 2 1 Department of Aquatic Zoology, Western Australian Museum. Locked Bag 49, Welshpool DC, Perth, Western Australia 6986. E-mail: [email protected] 2 Conservation International Indonesia Marine Program. Jl. Dr. Muwardi No. 17, Renon, Denpasar 80235 Indonesia. Abstract A checklist of shallow (to 60 m depth) reef fishes is provided for the Bird’s Head Peninsula region of West Papua, Indonesia. The area, which occupies the extreme western end of New Guinea, contains the world’s most diverse assemblage of coral reef fishes. The current checklist, which includes both historical records and recent survey results, includes 1,511 species in 451 genera and 111 families. Respective species totals for the three main coral reef areas – Raja Ampat Islands, Fakfak-Kaimana coast, and Cenderawasih Bay – are 1320, 995, and 877. In addition to its extraordinary species diversity, the region exhibits a remarkable level of endemism considering its relatively small area. A total of 26 species in 14 families are currently considered to be confined to the region. Introduction and finally a complex geologic past highlighted The region consisting of eastern Indonesia, East by shifting island arcs, oceanic plate collisions, Timor, Sabah, Philippines, Papua New Guinea, and widely fluctuating sea levels (Polhemus and the Solomon Islands is the global centre of 2007). reef fish diversity (Allen 2008). Approximately 2,460 species or 60 percent of the entire reef fish The Bird’s Head Peninsula and surrounding fauna of the Indo-West Pacific inhabits this waters has attracted the attention of naturalists and region, which is commonly referred to as the scientists ever since it was first visited by Coral Triangle (CT). -
Reproductive Development of Female Bonefish (Albula Spp.)
REPRODUCTIVE DEVELOPMENT OF FEMALE BONEFISH (ALBULA SPP.) FROM THE BAHAMAS by Cameron Alexander Luck A Thesis Submitted to the Faculty of The Charles E. Schmidt College of Science In Partial Fulfilment of the Requirements for the Degree of Master of Science Florida Atlantic University Boca Raton, Florida December 2018 Copyright 2018 by Cameron Luck ii ACKNOWLEDGEMENTS I sincerely appreciate the guidance of my advisor Dr. Matthew Ajemian for his continued support throughout this endeavor as well as the input from my committee members: Dr. Sahar Mejri, Dr. Aaron Adams, and Dr. Paul Wills. I am extremely grateful for the collaboration and support of Justin Lewis. Field collections would have been impossible without his local knowledge, willingness to be available, passion for bonefish, and incredible work ethic. I am also grateful for the words of wisdom and comedic relief often provided by fellow graduate students, lab members, and interns of the Fish Ecology and Conservation Lab: Grace Roskar, Breanna Degroot, Steve Lombardo, Rachel Shaw, Mike McCallister, Alex Allen, and many others. This project was financially supported by Bonefish & Tarpon Trust (BTT) and National Fish and Wildlife Foundation (NFWF). We are grateful for the lodging and water access provided by East End Lodge, Andros South, and Hank’s Place. The experimental protocol for this study received approval from Florida Atlantic University’s Institutional Animal Care and Use Committee (Animal Use Protocol #A16-34). iv ABSTRACT Author: Cameron Luck Title: Reproductive Development of Female Bonefish (Albula spp.) from the Bahamas Institution: Florida Atlantic University Thesis Advisor: Dr. Matthew J. Ajemian Degree: Master of Science Year: 2018 Bonefish (Albula spp.) support an economically important sport fishery, yet little is known regarding the reproductive biology of this genus. -
A Multifunction Trade-Off Has Contrasting Effects on the Evolution of Form and Function ∗ KATHERINE A
Syst. Biol. 0():1–13, 2020 © The Author(s) 2020. Published by Oxford University Press, on behalf of the Society of Systematic Biologists. All rights reserved. For permissions, please email: [email protected] DOI:10.1093/sysbio/syaa091 Downloaded from https://academic.oup.com/sysbio/advance-article/doi/10.1093/sysbio/syaa091/6040745 by University of California, Davis user on 08 January 2021 A Multifunction Trade-Off has Contrasting Effects on the Evolution of Form and Function ∗ KATHERINE A. CORN ,CHRISTOPHER M. MARTINEZ,EDWARD D. BURRESS, AND PETER C. WAINWRIGHT Department of Evolution & Ecology, University of California, Davis, 2320 Storer Hall, 1 Shields Ave, Davis, CA, 95616 USA ∗ Correspondence to be sent to: University of California, Davis, 2320 Storer Hall, 1 Shields Ave, Davis, CA 95618, USA; E-mail: [email protected] Received 27 August 2020; reviews returned 14 November 2020; accepted 19 November 2020 Associate Editor: Benoit Dayrat Abstract.—Trade-offs caused by the use of an anatomical apparatus for more than one function are thought to be an important constraint on evolution. However, whether multifunctionality suppresses diversification of biomechanical systems is challenged by recent literature showing that traits more closely tied to trade-offs evolve more rapidly. We contrast the evolutionary dynamics of feeding mechanics and morphology between fishes that exclusively capture prey with suction and multifunctional species that augment this mechanism with biting behaviors to remove attached benthic prey. Diversification of feeding kinematic traits was, on average, over 13.5 times faster in suction feeders, consistent with constraint on biters due to mechanical trade-offs between biting and suction performance. -
Phylogeny of the Plesiopidae (Pisces: Perciformes) with Evidence for the Inclusion of the Acanthoclinidae
BULLETIN OF MARINE SCIENCE, 52(1): 284-326,1993 PHYLOGENY OF THE PLESIOPIDAE (PISCES: PERCIFORMES) WITH EVIDENCE FOR THE INCLUSION OF THE ACANTHOCLINIDAE Randall D. Mooi ABSTRACT Cladistic methods are used to investigate phylogenetic relationships of the Indo-Pacific marine fish family Plesiopidae. Using multiple outgroups, osteological and myological char- acters indicate that plesiopids are monophyletic only with the inclusion of the Acanthoclinidae as the sister group to the genus Plesiops. A new classification lowers the Acanthoclinidae to subfamilial rank, and other monophyletic units are recognized at this same rank to produce the following phylogenctically sequenced classification (included genera in parentheses): Tra- chinopinae (Trachinops), Assessorinae (Assessor), Paraplesiopinae (Paraplesiops, Callople- siops, Steeneichthys), Fraudellinae (Fraudella), Plesiopinae (Plesiops), Acanthoclininae (Acan- thaclinus. Belaneplerygian. Behaps, Acanthoplesiops). This phylogeny suggests that egg mass guarding is plesiomorphic for the family, and that oral incubation in Assessor is autapo- morphic. A diagnosis for the newly defined family is provided. The family Plesiopidae, commonly called longfins, prettyfins, devilfishes, or roundheads, comprises a morphologically diverse group of percoid fishes found in the Indo-Pacific region. There are about 30 species in the family as currently recognized. Adult size ranges from 30 to 300 mm in standard length, and body form varies from narrow and elongate to bulky and heavy bodied. The species also vary considerably in behavior, from diurnal schooling to nocturnal solitary habits. Most are found in relatively shallow water (to 30 m) on coral or rocky reefs. The group is unusual among marine percoids in having demersal eggs with adhesive filaments, characteristic of only four other percoid families: Acantho- clinidae, Grammatidae, Opistognathidae, Pseudochromidae. -
Wainwright-Et-Al.-2012.Pdf
Copyedited by: ES MANUSCRIPT CATEGORY: Article Syst. Biol. 61(6):1001–1027, 2012 © The Author(s) 2012. Published by Oxford University Press, on behalf of the Society of Systematic Biologists. All rights reserved. For Permissions, please email: [email protected] DOI:10.1093/sysbio/sys060 Advance Access publication on June 27, 2012 The Evolution of Pharyngognathy: A Phylogenetic and Functional Appraisal of the Pharyngeal Jaw Key Innovation in Labroid Fishes and Beyond ,∗ PETER C. WAINWRIGHT1 ,W.LEO SMITH2,SAMANTHA A. PRICE1,KEVIN L. TANG3,JOHN S. SPARKS4,LARA A. FERRY5, , KRISTEN L. KUHN6 7,RON I. EYTAN6, AND THOMAS J. NEAR6 1Department of Evolution and Ecology, University of California, One Shields Avenue, Davis, CA 95616; 2Department of Zoology, Field Museum of Natural History, 1400 South Lake Shore Drive, Chicago, IL 60605; 3Department of Biology, University of Michigan-Flint, Flint, MI 48502; 4Department of Ichthyology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024; 5Division of Mathematical and Natural Sciences, Arizona State University, Phoenix, AZ 85069; 6Department of Ecology and Evolution, Peabody Museum of Natural History, Yale University, New Haven, CT 06520; and 7USDA-ARS, Beneficial Insects Introduction Research Unit, 501 South Chapel Street, Newark, DE 19713, USA; ∗ Correspondence to be sent to: Department of Evolution & Ecology, University of California, One Shields Avenue, Davis, CA 95616, USA; E-mail: [email protected]. Received 22 September 2011; reviews returned 30 November 2011; accepted 22 June 2012 Associate Editor: Luke Harmon Abstract.—The perciform group Labroidei includes approximately 2600 species and comprises some of the most diverse and successful lineages of teleost fishes. -
(Teleostei: Syngnathidae: Hippocampinae) from The
Disponible en ligne sur www.sciencedirect.com Annales de Paléontologie 98 (2012) 131–151 Original article The first known fossil record of pygmy pipehorses (Teleostei: Syngnathidae: Hippocampinae) from the Miocene Coprolitic Horizon, Tunjice Hills, Slovenia La première découverte de fossiles d’hippocampes « pygmy pipehorses » (Teleostei : Syngnathidae : Hippocampinae) de l’Horizon Coprolithique du Miocène des collines de Tunjice, Slovénie a,∗ b Jure Zaloharˇ , Tomazˇ Hitij a Department of Geology, Faculty of Natural Sciences and Engineering, University of Ljubljana, Aˇskerˇceva 12, SI-1000 Ljubljana, Slovenia b Dental School, Faculty of Medicine, University of Ljubljana, Hrvatski trg 6, SI-1000 Ljubljana, Slovenia Available online 27 March 2012 Abstract The first known fossil record of pygmy pipehorses is described. The fossils were collected in the Middle Miocene (Sarmatian) beds of the Coprolitic Horizon in the Tunjice Hills, Slovenia. They belong to a new genus and species Hippotropiscis frenki, which was similar to the extant representatives of Acentronura, Amphelikturus, Idiotropiscis, and Kyonemichthys genera. Hippotropiscis frenki lived among seagrasses and macroalgae and probably also on a mud and silt bottom in the temperate shallow coastal waters of the western part of the Central Paratethys Sea. The high coronet on the head, the ridge system and the high angle at which the head is angled ventrad indicate that Hippotropiscis is most related to Idiotropiscis and Hippocampus (seahorses) and probably separated from the main seahorse lineage later than Idiotropiscis. © 2012 Elsevier Masson SAS. All rights reserved. Keywords: Seahorses; Slovenia; Coprolitic Horizon; Sarmatian; Miocene Résumé L’article décrit la première découverte connue de fossiles d’hippocampes « pygmy pipehorses ». Les fos- siles ont été trouvés dans les plages du Miocène moyen (Sarmatien) de l’horizon coprolithique dans les collines de Tunjice, en Slovénie.