The Genus Tubocapsicum (Solanaceae)
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Phylogeny of the Andean Genus Deprea (Physalideae, Solanaceae): Testing the Generic Circumscription
Phytotaxa 238 (1): 071–081 ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ PHYTOTAXA Copyright © 2015 Magnolia Press Article ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.238.1.3 Phylogeny of the Andean genus Deprea (Physalideae, Solanaceae): testing the generic circumscription CAROLINA CARRIZO GARCÍA 1, GREG WAHLERT 2, CLARA INÉS OROZCO 3, GLORIA E. BARBOZA 1,4* & LYNN BOHS 2* 1 Instituto Multidisciplinario de Biología Vegetal (CONICET), Av. Velez Sarsfield 1611, Córdoba, Argentina 2 Department of Biology, University of Utah, 201 South Biology, Salt Lake City, USA 84112 3 Instituto de Ciencias Naturales, Universidad Nacional de Colombia, Entrada Calle 53, Bogotá, Colombia; A. A.7495 4 Facultad de Ciencias Químicas, Universidad Nacional de Córdoba, Haya de la Torre s/n, Córdoba, Argentina * Corresponding authors: [email protected]; [email protected] Abstract Deprea (Solanaceae) is a small South American genus of 10 species occurring in Andean areas from Venezuela to Bolivia. The circumscription of Deprea has been repeatedly modified in recent years, with new species being described and others transferred into or out of the genus. The relationships of Deprea to other genera of Solanaceae are still poorly understood, although it seems to be closely related to Larnax. A phylogenetic analysis was performed to test the monophyly of Deprea. Sequences from three molecular markers (nuclear ITS and waxy and chloroplast psbA-trnH) were analyzed by parsimony and Bayesian methods. All the species of Deprea and Larnax sampled were intermixed in a strongly supported clade in the consensus trees, and therefore the currently recognized Deprea species do not form a monophyletic group. -
A Família Solanaceae Juss. No Município De Vitória Da Conquista
Paubrasilia Artigo Original doi: 10.33447/paubrasilia.2021.e0049 2021;4:e0049 A família Solanaceae Juss. no município de Vitória da Conquista, Bahia, Brasil The family Solanaceae Juss. in the municipality of Vitória da Conquista, Bahia, Brazil Jerlane Nascimento Moura1 & Claudenir Simões Caires 1 1. Universidade Estadual do Sudoeste Resumo da Bahia, Departamento de Ciências Naturais, Vitória da Conquista, Bahia, Brasil Solanaceae é uma das maiores famílias de plantas vasculares, com 100 gêneros e ca. de 2.500 espécies, com distribuição subcosmopolita e maior diversidade na região Neotropical. Este trabalho realizou um levantamento florístico das espécies de Palavras-chave Solanales. Taxonomia. Florística. Solanaceae no município de Vitória da Conquista, Bahia, em área ecotonal entre Nordeste. Caatinga e Mata Atlântica. Foram realizadas coletas semanais de agosto/2019 a março/2020, totalizando 30 espécimes, depositados nos herbários HUESBVC e HVC. Keywords Solanales. Taxonomy. Floristics. Foram registradas 19 espécies, distribuídas em nove gêneros: Brunfelsia (2 spp.), Northeast. Capsicum (1 sp.), Cestrum (1 sp.), Datura (1 sp.), Iochroma (1 sp.) Nicandra (1 sp.), Nicotiana (1 sp.), Physalis (1 sp.) e Solanum (10 spp.). Dentre as espécies coletadas, cinco são endêmicas para o Brasil e 11 foram novos registros para o município. Nossos resultados demonstram que Solanaceae é uma família de elevada riqueza de espécies no município, contribuindo para o conhecimento da flora local. Abstract Solanaceae is one of the largest families of vascular plants, with 100 genera and ca. 2,500 species, with subcosmopolitan distribution and greater diversity in the Neotropical region. This work carried out a floristic survey of Solanaceae species in the municipality of Vitória da Conquista, Bahia, in an ecotonal area between Caatinga and Atlantic Forest. -
A Molecular Phylogeny of the Solanaceae
TAXON 57 (4) • November 2008: 1159–1181 Olmstead & al. • Molecular phylogeny of Solanaceae MOLECULAR PHYLOGENETICS A molecular phylogeny of the Solanaceae Richard G. Olmstead1*, Lynn Bohs2, Hala Abdel Migid1,3, Eugenio Santiago-Valentin1,4, Vicente F. Garcia1,5 & Sarah M. Collier1,6 1 Department of Biology, University of Washington, Seattle, Washington 98195, U.S.A. *olmstead@ u.washington.edu (author for correspondence) 2 Department of Biology, University of Utah, Salt Lake City, Utah 84112, U.S.A. 3 Present address: Botany Department, Faculty of Science, Mansoura University, Mansoura, Egypt 4 Present address: Jardin Botanico de Puerto Rico, Universidad de Puerto Rico, Apartado Postal 364984, San Juan 00936, Puerto Rico 5 Present address: Department of Integrative Biology, 3060 Valley Life Sciences Building, University of California, Berkeley, California 94720, U.S.A. 6 Present address: Department of Plant Breeding and Genetics, Cornell University, Ithaca, New York 14853, U.S.A. A phylogeny of Solanaceae is presented based on the chloroplast DNA regions ndhF and trnLF. With 89 genera and 190 species included, this represents a nearly comprehensive genus-level sampling and provides a framework phylogeny for the entire family that helps integrate many previously-published phylogenetic studies within So- lanaceae. The four genera comprising the family Goetzeaceae and the monotypic families Duckeodendraceae, Nolanaceae, and Sclerophylaceae, often recognized in traditional classifications, are shown to be included in Solanaceae. The current results corroborate previous studies that identify a monophyletic subfamily Solanoideae and the more inclusive “x = 12” clade, which includes Nicotiana and the Australian tribe Anthocercideae. These results also provide greater resolution among lineages within Solanoideae, confirming Jaltomata as sister to Solanum and identifying a clade comprised primarily of tribes Capsiceae (Capsicum and Lycianthes) and Physaleae. -
A Phylogenetic Analysis of the Inflated Fruiting Calyx in the Ph
bioRxiv preprint doi: https://doi.org/10.1101/425991; this version posted September 25, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Original article 2 3 Repeated evolution of a morphological novelty: a phylogenetic analysis of the inflated 4 fruiting calyx in the Physalideae tribe (Solanaceae) 5 6 Rocío Deanna1,2,3,4, Maximilien D. Larter2, Gloria E. Barboza1,2,3, Stacey D. Smith2 7 1Instituto Multidisciplinario de Biología Vegetal, IMBIV (CONICET-UNC). CC 495, 8 Córdoba 5000, Argentina. 9 2Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, 10 Colorado 80305, United States of America. 11 3Departamento de Ciencias Farmacéuticas, Facultad de Ciencias Químicas (FCQ, UNC). 12 Medina Allende s.n., Córdoba 5000, Argentina. 13 4Corresponding author. E-mail: [email protected] 14 15 Manuscript received __ _____; revision accepted ____ ___. 16 17 Running title: Fruiting calyx evolution in Physalideae 18 1 bioRxiv preprint doi: https://doi.org/10.1101/425991; this version posted September 25, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 19 PREMISE OF THE STUDY: The evolution of novel fruit morphologies has been integral 20 to the success of angiosperms. The inflated fruiting calyx, in which the balloon-like calyx 21 swells to completely surround the fruit, has evolved repeatedly across angiosperms and is 22 postulated to aid in protection and dispersal. -
(Trnf) Pseudogenes Defines a Distinctive Clade in Solanaceae Péter Poczai* and Jaakko Hyvönen
Poczai and Hyvönen SpringerPlus 2013, 2:459 http://www.springerplus.com/content/2/1/459 a SpringerOpen Journal SHORT REPORT Open Access Discovery of novel plastid phenylalanine (trnF) pseudogenes defines a distinctive clade in Solanaceae Péter Poczai* and Jaakko Hyvönen Abstract Background: The plastome of embryophytes is known for its high degree of conservation in size, structure, gene content and linear order of genes. The duplication of entire tRNA genes or their arrangement in a tandem array composed by multiple pseudogene copies is extremely rare in the plastome. Pseudogene repeats of the trnF gene have rarely been described from the chloroplast genome of angiosperms. Findings: We report the discovery of duplicated copies of the original phenylalanine (trnFGAA) gene in Solanaceae that are specific to a larger clade within the Solanoideae subfamily. The pseudogene copies are composed of several highly structured motifs that are partial residues or entire parts of the anticodon, T- and D-domains of the original trnF gene. Conclusions: The Pseudosolanoid clade consists of 29 genera and includes many economically important plants such as potato, tomato, eggplant and pepper. Keywords: Chloroplast DNA (cpDNA); Gene duplications; Phylogeny; Plastome evolution; Tandem repeats; trnL-trnF; Solanaceae Findings of this region. If this is ignored, it will easily lead to situa- The plastid trnT-trnF region has been widely applied to tions where basic requirement of homology of the charac- resolve phylogeny of embryophytes (Quandt and Stech ters used for phylogenetic analyses is compromised. This 2004; Zhao et al. 2011) and to address various questions of might lead to false hypotheses of phylogeny, especially population genetics since the development of universal when they are based on the analyses of only this region. -
Capsicum'' 1 Capsicum
''Capsicum'' 1 Capsicum Capsicum Fruit and longitudinal section Scientific classification Kingdom: Plantae (unranked): Angiosperms (unranked): Eudicots (unranked): Asterids Order: Solanales Family: Solanaceae Subfamily: Solanoideae Tribe: Capsiceae Genus: Capsicum [1] L. Species [2] See text For the fruit, see: Chili pepper For the heat simulating chemical in Chili pepper, see: Capsaicin Capsicum is a genus of flowering plants in the nightshade family, Solanaceae. Its species are native to the Americas, where they have been cultivated for thousands of years by the people of the tropical Americas, and are now cultivated worldwide. Some of the members of Capsicum are used as spices, vegetables, and medicines. The fruit of Capsicum plants have a variety of names depending on place and type. They are commonly called chilli pepper, red or green pepper, or sweet pepper in Britain, and typically just capsicum in Australian, New Zealand, and Indian English. The large mild form is called bell pepper in the U.S. and Canada. They are called paprika in some other countries (although paprika can also refer to the powdered spice made from various capsicum fruit). The generic name is derived from the Greek word καπτο (kapto), meaning "to bite" or "to swallow."[3] The original Mexican term, chilli (now chile in Mexico) came from the Nahuatl word chilli or xilli, referring to a larger Capsicum variety cultivated at least since 3000 BC, as evidenced by remains found in pottery from Puebla and Oaxaca.[4] ''Capsicum'' 2 Capsaicin in capsicum The fruit of most species of Capsicum contains capsaicin (methyl vanillyl nonenamide), a lipophilic chemical that can produce a strong burning sensation in the mouth of the unaccustomed eater. -
UNIVERSIDADE ESTADUAL DE CAMPINAS Instituto De Biologia
UNIVERSIDADE ESTADUAL DE CAMPINAS Instituto de Biologia TIAGO PEREIRA RIBEIRO DA GLORIA COMO A VARIAÇÃO NO NÚMERO CROMOSSÔMICO PODE INDICAR RELAÇÕES EVOLUTIVAS ENTRE A CAATINGA, O CERRADO E A MATA ATLÂNTICA? CAMPINAS 2020 TIAGO PEREIRA RIBEIRO DA GLORIA COMO A VARIAÇÃO NO NÚMERO CROMOSSÔMICO PODE INDICAR RELAÇÕES EVOLUTIVAS ENTRE A CAATINGA, O CERRADO E A MATA ATLÂNTICA? Dissertação apresentada ao Instituto de Biologia da Universidade Estadual de Campinas como parte dos requisitos exigidos para a obtenção do título de Mestre em Biologia Vegetal. Orientador: Prof. Dr. Fernando Roberto Martins ESTE ARQUIVO DIGITAL CORRESPONDE À VERSÃO FINAL DA DISSERTAÇÃO/TESE DEFENDIDA PELO ALUNO TIAGO PEREIRA RIBEIRO DA GLORIA E ORIENTADA PELO PROF. DR. FERNANDO ROBERTO MARTINS. CAMPINAS 2020 Ficha catalográfica Universidade Estadual de Campinas Biblioteca do Instituto de Biologia Mara Janaina de Oliveira - CRB 8/6972 Gloria, Tiago Pereira Ribeiro da, 1988- G514c GloComo a variação no número cromossômico pode indicar relações evolutivas entre a Caatinga, o Cerrado e a Mata Atlântica? / Tiago Pereira Ribeiro da Gloria. – Campinas, SP : [s.n.], 2020. GloOrientador: Fernando Roberto Martins. GloDissertação (mestrado) – Universidade Estadual de Campinas, Instituto de Biologia. Glo1. Evolução. 2. Florestas secas. 3. Florestas tropicais. 4. Poliploide. 5. Ploidia. I. Martins, Fernando Roberto, 1949-. II. Universidade Estadual de Campinas. Instituto de Biologia. III. Título. Informações para Biblioteca Digital Título em outro idioma: How can chromosome number -
UNC-11, a Caenorhabditis Elegans AP180 Homologue, Regulates The
TAXON 57 (4) • November 2008: 1159-1181 Olmstead & al. • Molecular phylogeny of Solanaceae MOLECULAR PHYLOGENETICS A molecular phylogeny of the Solanaceae Richard G. Olmstead1*, Lynn Bohs2, Hala Abdel M igid1’3, Eugenio Santiago-Valentin1’4, Vicente F. Garcia15 & Sarah M. Collier1,6 1 Department ofBiology, University o f Washington, Seattle, Washington 98195, U.S.A. *olmstead@ u.washington.edu (authorfor correspondence) 2 Department o f Biology, University o f Utah, Salt Lake City, Utah 84112, U.S.A. 3 Present address: Botany Department, Faculty o f Science, Mansoura University, Mansoura, Egypt 4 Present address: Jardin Botanico de Puerto Rico, Universidad de Puerto Rico, Apartado Postal 364984, San Juan 00936, Puerto Rico 5 Present address: Department o f Integrative Biology, 3060 Valley Life Sciences Building, University of California, Berkeley, California 94720, U.S.A. 6 Present address: Department o f Plant Breeding and Genetics, Cornell University, Ithaca, New York 14853, U.S.A. A phylogeny of Solanaceae is presented based on the chloroplast DNA regions ndhF and tm LF. W ith 89 genera and 190 species included, this represents a nearly comprehensive genus-level sampling and provides a framework phylogeny for the entire family that helps integrate many previously-published phylogenetic studies within So lanaceae. The four genera comprising the family Goetzeaceae and the monotypic families Duckeodendraceae, Nolanaceae, and Sclerophylaceae, often recognized in traditional classifications, are shown to be included in Solanaceae. The current results corroborate previous studies that identify a monophyletic subfamily Solanoideae and the more inclusive “x = 12” clade, which includes Nieotiana and the Australian tribe Anthocercideae. These results also provide greater resolution among lineages within Solanoideae, confirming Jaltom ata as sister to Solanum and identifying a clade comprised primarily of tribes Capsiceae (Capsicum and Lycianthes) and Physaleae. -
Multiple Recent Horizontal Transfers of the Cox1 Intron in Solanaceae and Extended Co-Conversion of Flanking Exons
Sanchez-Puerta et al. BMC Evolutionary Biology 2011, 11:277 http://www.biomedcentral.com/1471-2148/11/277 RESEARCH ARTICLE Open Access Multiple recent horizontal transfers of the cox1 intron in Solanaceae and extended co-conversion of flanking exons Maria V Sanchez-Puerta1*, Cinthia C Abbona2, Shi Zhuo3, Eric J Tepe4,5, Lynn Bohs4, Richard G Olmstead6 and Jeffrey D Palmer3 Abstract Background: The most frequent case of horizontal transfer in plants involves a group I intron in the mitochondrial gene cox1, which has been acquired via some 80 separate plant-to-plant transfer events among 833 diverse angiosperms examined. This homing intron encodes an endonuclease thought to promote the intron’s promiscuous behavior. A promising experimental approach to study endonuclease activity and intron transmission involves somatic cell hybridization, which in plants leads to mitochondrial fusion and genome recombination. However, the cox1 intron has not yet been found in the ideal group for plant somatic genetics - the Solanaceae. We therefore undertook an extensive survey of this family to find members with the intron and to learn more about the evolutionary history of this exceptionally mobile genetic element. Results: Although 409 of the 426 species of Solanaceae examined lack the cox1 intron, it is uniformly present in three phylogenetically disjunct clades. Despite strong overall incongruence of cox1 intron phylogeny with angiosperm phylogeny, two of these clades possess nearly identical intron sequences and are monophyletic in intron phylogeny. These two clades, and possibly the third also, contain a co-conversion tract (CCT) downstream of the intron that is extended relative to all previously recognized CCTs in angiosperm cox1. -
Physalis Angulata (L.)
Innovare International Journal of Pharmacy and Pharmaceutical Sciences Academic Sciences ISSN- 0975-1491 Vol 7, Issue 8, 2015 Review Article A PHARMACOLOGICAL COMPREHENSIVE REVIEW ON ‘RASSBHARY’ PHYSALIS ANGULATA (L.) NAVDEEP SHARMA1, ANISHA BANO1, HARCHARAN S. DHALIWAL1, VIVEK SHARMA1* 1Akal College of Agriculture, Eternal University, Baru Sahib 173101 (H. P.) India Email: [email protected] Received: 06 May 2015 Revised and Accepted: 15 Jun 2015 ABSTRACT The present review article reveals the importance of species Physalis angulata (L.) of the genus Physalis (L.) distributed worldwide including India. Physalis species are perennial, erect and variously having toothed or lobed leaves. Physalis angulata (L.) belongs to the family Solanaceae, includes about 120 species with different and specific herbal characters. On the basis of these herbal characters, the plant is traditionally used as medicine to cure various disorders like asthma, kidney, bladder, jaundice, gout, inflammations, cancer, digestive problems and diabetes etc. P. angulata is a source of the variety of phytoconstituents like phytosteroles, withangulatin A, a variety of physalins and flavonol glycoside etc. The plant extracts from the different parts having different pharmacological activities such as anti-cancerous, immunomodulatory, anti-diabetic, diuretic and anti-bacterial. In this article cytomorphological, phytochemical, biological activities and ethnobotanical inputs have been extensively recorded for P. angulata (L.). Keywords: Physalis angulata (L.), Cytomorphology, Phytochemistry, Ethnobotany, Biological activities. INTRODUCTION lands, along roads, in the forest along creeks near sea levels and in cultivated fields [3]. All over the world this plant is used for the From the ancient time plants have been used in preparation of herbal medicine and for the treatment of various human ailments medicines for treatment of various human and animal diseases. -
Las Especies Del Género Iochroma Benth. (Solanaceae) Que Habitan En La Región La Libertad, Y Un Nuevo Taxón Del Norte Del Perú
Leiva: Las especies del género Iochroma (Solanaceae) en la región La Libertad, y un nuevo taxón del Norte del Perú Arnaldoa 24 (1): 63 - 118, 2017 ISSN: 1815-8242 (edición impresa) http://doi.org/10.22497/arnaldoa.241.24105 ISSN: 2413-3299 (edición online) Las especies del género Iochroma Benth. (Solanaceae) que habitan en la región La Libertad, y un nuevo taxón del Norte del Perú The species of genus Iochroma Benth. (Solanaceae) inhabiting La Libertad Region, and a new taxon from Northern Peru Segundo Leiva González Herbario Antenor Orrego (HAO), Museo de Historia Natural, Universidad Privada Antenor Orrego, Casilla Postal 1075, Trujillo, PERÚ [email protected] / [email protected] 24 (1): Enero - Junio, 2017 63 Este es un artículo de acceso abierto bajo la licencia CC BY-NC 4.0: https://creativecommons.org/licenses/by-nc/4.0/ Leiva: Las especies del género Iochroma (Solanaceae) en la región La Libertad, y un nuevo taxón del Norte del Perú Recibido: 20-XII-2016; Aceptado: 20-III-2017; Publicado: VI-2017; Edición online: 29-V-2017 Resumen Se describen e ilustran en detalle las especies del género Iochroma Benth. (Solanaceae) que habitan en la región La Libertad, y un nuevo taxón del norte del Perú. Se reportan 8 especies, de ellas 7 son peruanas, a saber: I. cachicadanum, I. cornifolium (Ecuador), I. edule, I. lilacinum, I. rubicalyx, I. salpoanum, I. smithianum e I. tupayachanum. De estas, 5 presentan bayas amarillo anaranjado y son frutas silvestres comestibles. Se describe un nuevo taxón, I. viridescens, propia del norte de Perú, presenta 29-44 flores por nudo, dispuestas en fascículos, corola verde oscura el área distal disminuyendo hacia el área basal externamente, verdoso amarillento interiormente, área libre de los filamentos estaminales blanco cremosas de 0,2-0,3 mm de longitud, anteras amarillentas con un mucrón apical incipiente, estigma trilobado. -
A. Michael Powell
IN MEMORIAM: JOHN EARL AVERETT (19 APRIL 1943–1 JANUARY 2017) A. Michael Powell Herbarium Department of Biology, Geology, and Physical Sciences Sul Ross State University Alpine, Texas 79832, U.S.A. [email protected] On 6 January 2017 I learned from Dr. Tom Watson that his long-time friend Dr. John Averett had passed away on 1 Jan 2017. In the mid-1960s Tom and John were students and frequent field companions in the Department of Biology at Sul Ross State University, and they were classmates in doctoral programs in the Department of Botany, The University of Texas, Austin. The two friends remained in contact over the years. Tom was having a difficult time dealing with the passing of his close friend. The news about John’s death was a shock to me. I did not know he was ill. It seemed that only a short time ago we were involved in telephone conversations, mostly about the treatment of Chamaesaracha (Solanaceae) John was preparing for the Flora of North America North of Mexico. Also John was making arrangements to donate his personal collections of Chamaesaracha to SRSC—a full circle of sorts, in that they would reside in the folders with specimens he had collected and an- notated during his days at Sul Ross. On 6 January 2017, John’s beloved wife Audrey related to me that “John was diagnosed with prostate can- cer and underwent a prostatectomy in 2003. It was a particularly virulent strain of cancer and the prognosis wasn’t good. Somehow he managed with unpleasant but tolerable side effects until 2012.