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Ectomycorrhizal Fungi and the Enzymatic Liberation of Nitrogen from Soil Organic Matter: Why Evolutionary History Matters
Review Tansley insight Ectomycorrhizal fungi and the enzymatic liberation of nitrogen from soil organic matter: why evolutionary history matters Author for correspondence: Peter T. Pellitier1 and Donald R. Zak1,2 Donald R. Zak 1 2 Tel: +1 734 763 4991 School of Natural Resources & Environment, University of Michigan, 440 Church St, Ann Arbor, MI 48109, USA; Department of Email: [email protected] Ecology & Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109, USA Received: 25 January 2017 Accepted: 22 March 2017 Contents Summary 68 V. Is the organic N derived from SOM transferred to the plant host? 71 I. Introduction 68 VI. Concluding remarks 72 II. Have ECM fungi retained genes with lignocellulolytic potential from saprotrophic ancestors? 69 Acknowledgements 72 III. Are genes with saprotrophic function expressed by ECM fungi References 72 when in symbiosis? 71 IV. Do transcribed enzymes operate to obtain N from SOM? 71 Summary New Phytologist (2018) 217: 68–73 The view that ectomycorrhizal (ECM) fungi commonly participate in the enzymatic liberation of doi: 10.1111/nph.14598 nitrogen (N) from soil organic matter (SOM) has recently been invoked as a key mechanism governing the biogeochemical cycles of forest ecosystems. Here, we provide evidence that not Key words: ectomycorrhiza, evolution, all evolutionary lineages of ECM have retained the genetic potential to produce extracellular extracellular enzymes, nitrogen (N), soil enzymes that degrade SOM, calling into question the ubiquity of the proposed mechanism. organic matter (SOM), symbioses. Further, we discuss several untested conditions that must be empirically validated before it is certain that any lineage of ECM fungi actively expresses extracellular enzymes in order to degrade SOM and transfer N contained therein to its host plant. -
Mycodiversity Studies in Selected Ecosystems of Greece: 5
Uploaded — May 2011 [Link page — MYCOTAXON 115: 535] Expert reviewers: Giuseppe Venturella, Solomon P. Wasser Mycodiversity studies in selected ecosystems of Greece: 5. Basidiomycetes associated with woods dominated by Castanea sativa (Nafpactia Mts., central Greece) ELIAS POLEMIS1, DIMITRIS M. DIMOU1,3, LEONIDAS POUNTZAS4, DIMITRIS TZANOUDAKIS2 & GEORGIOS I. ZERVAKIS1* 1 [email protected], [email protected] Agricultural University of Athens, Lab. of General & Agricultural Microbiology Iera Odos 75, 11855 Athens, Greece 2 University of Patras, Dept. of Biology, Panepistimioupoli, 26500 Rion, Greece 3 Koritsas 10, 15343 Agia Paraskevi, Greece 4 Technological Educational Institute of Mesologgi, 30200 Mesologgi, Greece Abstract — Very scarce literature data are available on the macrofungi associated with sweet chestnut trees (Castanea sativa, Fagaceae). We report here the results of an inventory of basidiomycetes, which was undertaken in the region of Nafpactia Mts., central Greece. The investigated area, with woods dominated by C. sativa, was examined for the first time in respect to its mycodiversity. One hundred and four species belonging in 54 genera were recorded. Fifteen species (Conocybe pseudocrispa, Entoloma nitens, Lactarius glaucescens, Lichenomphalia velutina, Parasola schroeteri, Pholiotina coprophila, Russula alutacea, R. azurea, R. pseudoaeruginea, R. pungens, R. vitellina, Sarcodon glaucopus, Tomentella badia, T. fibrosa and Tubulicrinis sororius) are reported for the first time from Greece. In addition, 33 species constitute new habitats/hosts/substrates records. Key words — biodiversity, macromycete, Mediterranean, mushroom Introduction Castanea sativa Mill., Fagaceae (sweet chestnut) generally prefers north- facing slopes where the rainfall is greater than 600 mm, on moderately acid soils (pH 4.5–6.5) with a light texture. It covers ca. -
Influence of Tree Species on Richness and Diversity of Epigeous Fungal
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Archive Ouverte en Sciences de l'Information et de la Communication fungal ecology 4 (2011) 22e31 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/funeco Influence of tree species on richness and diversity of epigeous fungal communities in a French temperate forest stand Marc BUE´Ea,*, Jean-Paul MAURICEb, Bernd ZELLERc, Sitraka ANDRIANARISOAc, Jacques RANGERc,Re´gis COURTECUISSEd, Benoıˆt MARC¸AISa, Franc¸ois LE TACONa aINRA Nancy, UMR INRA/UHP 1136 Interactions Arbres/Microorganismes, 54280 Champenoux, France bGroupe Mycologique Vosgien, 18 bis, place des Cordeliers, 88300 Neufchaˆteau, France cINRA Nancy, UR 1138 Bioge´ochimie des Ecosyste`mes Forestiers, 54280 Champenoux, France dUniversite´ de Lille, Faculte´ de Pharmacie, F59006 Lille, France article info abstract Article history: Epigeous saprotrophic and ectomycorrhizal (ECM) fungal sporocarps were assessed during Received 30 September 2009 7 yr in a French temperate experimental forest site with six 30-year-old mono-specific Revision received 10 May 2010 plantations (four coniferous and two hardwood plantations) and one 150-year-old native Accepted 21 July 2010 mixed deciduous forest. A total of 331 fungal species were identified. Half of the fungal Available online 6 October 2010 species were ECM, but this proportion varied slightly by forest composition. The replace- Corresponding editor: Anne Pringle ment of the native forest by mono-specific plantations, including native species such as beech and oak, considerably altered the diversity of epigeous ECM and saprotrophic fungi. Keywords: Among the six mono-specific stands, fungal diversity was the highest in Nordmann fir and Conifer plantation Norway spruce plantations and the lowest in Corsican pine and Douglas fir plantations. -
Olympic Mushrooms 4/16/2021 Susan Mcdougall
Olympic Mushrooms 4/16/2021 Susan McDougall With links to species’ pages 206 species Family Scientific Name Common Name Agaricaceae Agaricus augustus Giant agaricus Agaricaceae Agaricus hondensis Felt-ringed Agaricus Agaricaceae Agaricus silvicola Forest Agaric Agaricaceae Chlorophyllum brunneum Shaggy Parasol Agaricaceae Chlorophyllum olivieri Olive Shaggy Parasol Agaricaceae Coprinus comatus Shaggy inkcap Agaricaceae Crucibulum laeve Common bird’s nest fungus Agaricaceae Cyathus striatus Fluted bird’s nest Agaricaceae Cystoderma amianthinum Pure Cystoderma Agaricaceae Cystoderma cf. gruberinum Agaricaceae Gymnopus acervatus Clustered Collybia Agaricaceae Gymnopus dryophilus Common Collybia Agaricaceae Gymnopus luxurians Agaricaceae Gymnopus peronatus Wood woolly-foot Agaricaceae Lepiota clypeolaria Shield dapperling Agaricaceae Lepiota magnispora Yellowfoot dapperling Agaricaceae Leucoagaricus leucothites White dapperling Agaricaceae Leucoagaricus rubrotinctus Red-eyed parasol Agaricaceae Morganella pyriformis Warted puffball Agaricaceae Nidula candida Jellied bird’s-nest fungus Agaricaceae Nidularia farcta Albatrellaceae Albatrellus avellaneus Amanitaceae Amanita augusta Yellow-veiled amanita Amanitaceae Amanita calyptroderma Ballen’s American Caesar Amanitaceae Amanita muscaria Fly agaric Amanitaceae Amanita pantheriana Panther cap Amanitaceae Amanita vaginata Grisette Auriscalpiaceae Lentinellus ursinus Bear lentinellus Bankeraceae Hydnellum aurantiacum Orange spine Bankeraceae Hydnellum complectipes Bankeraceae Hydnellum suaveolens -
Chemical Elements in Ascomycetes and Basidiomycetes
Chemical elements in Ascomycetes and Basidiomycetes The reference mushrooms as instruments for investigating bioindication and biodiversity Roberto Cenci, Luigi Cocchi, Orlando Petrini, Fabrizio Sena, Carmine Siniscalco, Luciano Vescovi Editors: R. M. Cenci and F. Sena EUR 24415 EN 2011 1 The mission of the JRC-IES is to provide scientific-technical support to the European Union’s policies for the protection and sustainable development of the European and global environment. European Commission Joint Research Centre Institute for Environment and Sustainability Via E.Fermi, 2749 I-21027 Ispra (VA) Italy Legal Notice Neither the European Commission nor any person acting on behalf of the Commission is responsible for the use which might be made of this publication. Europe Direct is a service to help you find answers to your questions about the European Union Freephone number (*): 00 800 6 7 8 9 10 11 (*) Certain mobile telephone operators do not allow access to 00 800 numbers or these calls may be billed. A great deal of additional information on the European Union is available on the Internet. It can be accessed through the Europa server http://europa.eu/ JRC Catalogue number: LB-NA-24415-EN-C Editors: R. M. Cenci and F. Sena JRC65050 EUR 24415 EN ISBN 978-92-79-20395-4 ISSN 1018-5593 doi:10.2788/22228 Luxembourg: Publications Office of the European Union Translation: Dr. Luca Umidi © European Union, 2011 Reproduction is authorised provided the source is acknowledged Printed in Italy 2 Attached to this document is a CD containing: • A PDF copy of this document • Information regarding the soil and mushroom sampling site locations • Analytical data (ca, 300,000) on total samples of soils and mushrooms analysed (ca, 10,000) • The descriptive statistics for all genera and species analysed • Maps showing the distribution of concentrations of inorganic elements in mushrooms • Maps showing the distribution of concentrations of inorganic elements in soils 3 Contact information: Address: Roberto M. -
Phd. Thesis Sana Jabeen.Pdf
ECTOMYCORRHIZAL FUNGAL COMMUNITIES ASSOCIATED WITH HIMALAYAN CEDAR FROM PAKISTAN A dissertation submitted to the University of the Punjab in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY in BOTANY by SANA JABEEN DEPARTMENT OF BOTANY UNIVERSITY OF THE PUNJAB LAHORE, PAKISTAN JUNE 2016 TABLE OF CONTENTS CONTENTS PAGE NO. Summary i Dedication iii Acknowledgements iv CHAPTER 1 Introduction 1 CHAPTER 2 Literature review 5 Aims and objectives 11 CHAPTER 3 Materials and methods 12 3.1. Sampling site description 12 3.2. Sampling strategy 14 3.3. Sampling of sporocarps 14 3.4. Sampling and preservation of fruit bodies 14 3.5. Morphological studies of fruit bodies 14 3.6. Sampling of morphotypes 15 3.7. Soil sampling and analysis 15 3.8. Cleaning, morphotyping and storage of ectomycorrhizae 15 3.9. Morphological studies of ectomycorrhizae 16 3.10. Molecular studies 16 3.10.1. DNA extraction 16 3.10.2. Polymerase chain reaction (PCR) 17 3.10.3. Sequence assembly and data mining 18 3.10.4. Multiple alignments and phylogenetic analysis 18 3.11. Climatic data collection 19 3.12. Statistical analysis 19 CHAPTER 4 Results 22 4.1. Characterization of above ground ectomycorrhizal fungi 22 4.2. Identification of ectomycorrhizal host 184 4.3. Characterization of non ectomycorrhizal fruit bodies 186 4.4. Characterization of saprobic fungi found from fruit bodies 188 4.5. Characterization of below ground ectomycorrhizal fungi 189 4.6. Characterization of below ground non ectomycorrhizal fungi 193 4.7. Identification of host taxa from ectomycorrhizal morphotypes 195 4.8. -
Downloaded from EMBL [25]
BMC Microbiology BioMed Central Methodology article Open Access Fungal-specific PCR primers developed for analysis of the ITS region of environmental DNA extracts Kendall J Martin*1 and Paul T Rygiewicz2 Address: 1Dynamac Corporation, National Health and Environmental Effects Research Laboratory, Corvallis, OR USA and 2USEPA National Health and Environmental Effects Research Laboratory, Corvallis, OR, USA Email: Kendall J Martin* - [email protected]; Paul T Rygiewicz - [email protected] * Corresponding author Published: 18 May 2005 Received: 30 November 2004 Accepted: 18 May 2005 BMC Microbiology 2005, 5:28 doi:10.1186/1471-2180-5-28 This article is available from: http://www.biomedcentral.com/1471-2180/5/28 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. PCRprimersbasidiomycetesascomycetesInternal Transcribed Spacer (ITS)X/T rapid extraction method Abstract Background: The Internal Transcribed Spacer (ITS) regions of fungal ribosomal DNA (rDNA) are highly variable sequences of great importance in distinguishing fungal species by PCR analysis. Previously published PCR primers available for amplifying these sequences from environmental samples provide varying degrees of success at discriminating against plant DNA while maintaining a broad range of compatibility. Typically, it has been necessary to use multiple primer sets to accommodate the range of fungi under study, potentially creating artificial distinctions for fungal sequences that amplify with more than one primer set. Results: Numerous sequences for PCR primers were tested to develop PCR assays with a wide range of fungal compatibility and high discrimination from plant DNA. -
Mycology Praha
f I VO LUM E 52 I / I [ 1— 1 DECEMBER 1999 M y c o l o g y l CZECH SCIENTIFIC SOCIETY FOR MYCOLOGY PRAHA J\AYCn nI .O §r%u v J -< M ^/\YC/-\ ISSN 0009-°476 n | .O r%o v J -< Vol. 52, No. 1, December 1999 CZECH MYCOLOGY ! formerly Česká mykologie published quarterly by the Czech Scientific Society for Mycology EDITORIAL BOARD Editor-in-Cliief ; ZDENĚK POUZAR (Praha) ; Managing editor JAROSLAV KLÁN (Praha) j VLADIMÍR ANTONÍN (Brno) JIŘÍ KUNERT (Olomouc) ! OLGA FASSATIOVÁ (Praha) LUDMILA MARVANOVÁ (Brno) | ROSTISLAV FELLNER (Praha) PETR PIKÁLEK (Praha) ; ALEŠ LEBEDA (Olomouc) MIRKO SVRČEK (Praha) i Czech Mycology is an international scientific journal publishing papers in all aspects of 1 mycology. Publication in the journal is open to members of the Czech Scientific Society i for Mycology and non-members. | Contributions to: Czech Mycology, National Museum, Department of Mycology, Václavské 1 nám. 68, 115 79 Praha 1, Czech Republic. Phone: 02/24497259 or 96151284 j SUBSCRIPTION. Annual subscription is Kč 350,- (including postage). The annual sub scription for abroad is US $86,- or DM 136,- (including postage). The annual member ship fee of the Czech Scientific Society for Mycology (Kč 270,- or US $60,- for foreigners) includes the journal without any other additional payment. For subscriptions, address changes, payment and further information please contact The Czech Scientific Society for ! Mycology, P.O.Box 106, 11121 Praha 1, Czech Republic. This journal is indexed or abstracted in: i Biological Abstracts, Abstracts of Mycology, Chemical Abstracts, Excerpta Medica, Bib liography of Systematic Mycology, Index of Fungi, Review of Plant Pathology, Veterinary Bulletin, CAB Abstracts, Rewicw of Medical and Veterinary Mycology. -
Catalogue of Fungus Fair
Oakland Museum, 6-7 December 2003 Mycological Society of San Francisco Catalogue of Fungus Fair Introduction ......................................................................................................................2 History ..............................................................................................................................3 Statistics ...........................................................................................................................4 Total collections (excluding "sp.") Numbers of species by multiplicity of collections (excluding "sp.") Numbers of taxa by genus (excluding "sp.") Common names ................................................................................................................6 New names or names not recently recorded .................................................................7 Numbers of field labels from tables Species found - listed by name .......................................................................................8 Species found - listed by multiplicity on forays ..........................................................13 Forays ranked by numbers of species .........................................................................16 Larger forays ranked by proportion of unique species ...............................................17 Species found - by county and by foray ......................................................................18 Field and Display Label examples ................................................................................27 -
Moeszia9-10.Pdf
Tartalom Tanulmányok • Original papers .............................................................................................. 3 Contents Pál-Fám Ferenc, Benedek Lajos: Kucsmagombák és papsapkagombák Székelyföldön. Előfordulás, fajleírások, makroszkópikus határozókulcs, élőhelyi jellemzés .................................... 3 Ferenc Pál-Fám, Lajos Benedek: Morels and Elfin Saddles in Székelyland, Transylvania. Occurrence, Species Description, Macroscopic Key, Habitat Characterisation ........................... 13 Pál-Fám Ferenc, Benedek Lajos: A Kárpát-medence kucsmagombái és papsapkagombái képekben .................................................................................................................................... 18 Ferenc Pál-Fám, Lajos Benedek: Pictures of Morels and Elfin Saddles from the Carpathian Basin ....................................................................................................................... 18 Szász Balázs: Újabb adatok Olthévíz és környéke nagygombáinak ismeretéhez .......................... 28 Balázs Szász: New Data on Macrofungi of Hoghiz Region (Transylvania, Romania) ................. 42 Pál-Fám Ferenc, Szász Balázs, Szilvásy Edit, Benedek Lajos: Adatok a Baróti- és Bodoki-hegység nagygombáinak ismeretéhez ............................................................................ 44 Ferenc Pál-Fám, Balázs Szász, Edit Szilvásy, Lajos Benedek: Contribution to the Knowledge of Macrofungi of Baróti- and Bodoki Mts., Székelyland, Transylvania ..................... 53 Pál-Fám -
Ordre Du Jour
C A F A M Conférence des Associations et Fédérations d’Associations Mycologiques Saint-Jean-la-Vêtre 15-17 mai 2009 Ordre du jour Président : Henri NOGUÈRE (FAMM) Prise de notes : J.-P. AUGST, R. COURTECUISSE, P.-A. MOREAU (rédacteur) Vendredi 15 mai 2009 • A partir de 14 h : Accueil dans la structure. • 15 h : Présentation de l’ordre du jour sûrement à modifier • 15h30 : Réflexion sur la CAFAM. • 16h : Calendrier des manifestations 2009 à 2010. • 14h : Le point sur la vente des ouvrages de la série MARCHAND et fond disponible pour un projet myco. Robert CAZENAVE. • 20h30 : Le point sur les noms français. • 19h : Repas. Samedi 16 mai 2009 ; • 9h : Les nouveautés taxinomiques et nomenclatures pour la fonde française (dépouillement bibliographique) pour l’année 2008. Régis COURTECUISSE. • 10h : Le point sur l’inventaire national. Régis COURTECUISSE. • 11h : La liste rouge nationale des champignons menacés en France. Régis COURTECUISSE. • 11h30 : Le point sur MYCOBIG. Robert CAZENAVE. • 12h : Repas. • 14h : Le point sur la semaine nationale du champignon. René CHALANGE. • 14h30 : L’élaboration de la plaquette du champignon 2009. René CHALANGE. • 16h : Le point sur MYCOGLOB. • 17h30 : Présentation de l’ouvrage « Compléments à la Flore des Champignons Supérieurs du Maroc » Pierre-Arthur MOREAU. • 19h : Repas. • 20h30 : A.G. de l’observatoire Mycologique. Président Gilles MABON. Dimanche 17 mai 2009. * 9h : • 11h30 : Bilan de la CAFAM 2009. • 12h ; Repas. Ajouts : Affiches pour expositions (JP Augst) Inversion Noms français/Nouveautés (A. Favre) -
The Largest Type Study of <I>Agaricales</I
Persoonia 33, 2014: 98–140 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158514X684681 The largest type study of Agaricales species to date: bringing identification and nomenclature of Phlegmacium (Cortinarius) into the DNA era K. Liimatainen1, T. Niskanen1, B. Dima!, I. Kytövuori2, J.F. Ammirati3, T.G. Frøslev4 Key words Abstract Cortinarius is a species-rich and morphologically challenging genus with a cosmopolitan distribution. Many names have not been used consistently and in some instances the same species has been described two or Basidiomycota more times under separate names. This study focuses on subg. Phlegmacium as traditionally defined and includes diversity species from boreal and temperate areas of the northern hemisphere. Our goals for this project were to: i) study DNA barcoding type material to determine which species already have been described; ii) stabilize the use of Friesian and other ITS older names by choosing a neo- or epitype; iii) describe new species that were discovered during the process of taxonomy studying specimens; and iv) establish an accurate ITS barcoding database for Phlegmacium species. A total of 236 typification types representing 154 species were studied. Of these 114 species are described only once whereas 40 species had one ore more synonyms. Of the names studied only 61 were currently represented in GenBank. Neotypes are proposed for 21 species, and epitypes are designated for three species. In addition, 20 new species are described and six new combinations made. As a consequence ITS barcodes for 175 Cortinarius species are released. Article info Received: 2 July 2013; Accepted: 24 February 2014; Published: 8 September 2014.