Recommendations for Competing Sexual-Asexually Typified Generic
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Phaeoseptaceae, Pleosporales) from China
Mycosphere 10(1): 757–775 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/17 Morphological and phylogenetic studies of Pleopunctum gen. nov. (Phaeoseptaceae, Pleosporales) from China Liu NG1,2,3,4,5, Hyde KD4,5, Bhat DJ6, Jumpathong J3 and Liu JK1*,2 1 School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 611731, P.R. China 2 Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultural Sciences, Guiyang 550006, P.R. China 3 Faculty of Agriculture, Natural Resources and Environment, Naresuan University, Phitsanulok 65000, Thailand 4 Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 5 Mushroom Research Foundation, Chiang Rai 57100, Thailand 6 No. 128/1-J, Azad Housing Society, Curca, P.O., Goa Velha 403108, India Liu NG, Hyde KD, Bhat DJ, Jumpathong J, Liu JK 2019 – Morphological and phylogenetic studies of Pleopunctum gen. nov. (Phaeoseptaceae, Pleosporales) from China. Mycosphere 10(1), 757–775, Doi 10.5943/mycosphere/10/1/17 Abstract A new hyphomycete genus, Pleopunctum, is introduced to accommodate two new species, P. ellipsoideum sp. nov. (type species) and P. pseudoellipsoideum sp. nov., collected from decaying wood in Guizhou Province, China. The genus is characterized by macronematous, mononematous conidiophores, monoblastic conidiogenous cells and muriform, oval to ellipsoidal conidia often with a hyaline, elliptical to globose basal cell. Phylogenetic analyses of combined LSU, SSU, ITS and TEF1α sequence data of 55 taxa were carried out to infer their phylogenetic relationships. The new taxa formed a well-supported subclade in the family Phaeoseptaceae and basal to Lignosphaeria and Thyridaria macrostomoides. -
Mycosphere Notes 225–274: Types and Other Specimens of Some Genera of Ascomycota
Mycosphere 9(4): 647–754 (2018) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/9/4/3 Copyright © Guizhou Academy of Agricultural Sciences Mycosphere Notes 225–274: types and other specimens of some genera of Ascomycota Doilom M1,2,3, Hyde KD2,3,6, Phookamsak R1,2,3, Dai DQ4,, Tang LZ4,14, Hongsanan S5, Chomnunti P6, Boonmee S6, Dayarathne MC6, Li WJ6, Thambugala KM6, Perera RH 6, Daranagama DA6,13, Norphanphoun C6, Konta S6, Dong W6,7, Ertz D8,9, Phillips AJL10, McKenzie EHC11, Vinit K6,7, Ariyawansa HA12, Jones EBG7, Mortimer PE2, Xu JC2,3, Promputtha I1 1 Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand 2 Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, 132 Lanhei Road, Kunming 650201, China 3 World Agro Forestry Centre, East and Central Asia, 132 Lanhei Road, Kunming 650201, Yunnan Province, People’s Republic of China 4 Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan 655011, China 5 Shenzhen Key Laboratory of Microbial Genetic Engineering, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518060, China 6 Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 7 Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai 50200, Thailand 8 Department Research (BT), Botanic Garden Meise, Nieuwelaan 38, BE-1860 Meise, Belgium 9 Direction Générale de l'Enseignement non obligatoire et de la Recherche scientifique, Fédération Wallonie-Bruxelles, Rue A. -
Morinagadepsin, a Depsipeptide from the Fungus Morinagamyces Vermicularis Gen. Et Comb. Nov
microorganisms Article Morinagadepsin, a Depsipeptide from the Fungus Morinagamyces vermicularis gen. et comb. nov. Karen Harms 1,2 , Frank Surup 1,2,* , Marc Stadler 1,2 , Alberto Miguel Stchigel 3 and Yasmina Marin-Felix 1,* 1 Department Microbial Drugs, Helmholtz Centre for Infection Research, Inhoffenstrasse 7, 38124 Braunschweig, Germany; [email protected] (K.H.); [email protected] (M.S.) 2 Institute of Microbiology, Technische Universität Braunschweig, Spielmannstrasse 7, 38106 Braunschweig, Germany 3 Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili, C/ Sant Llorenç 21, 43201 Reus, Tarragona, Spain; [email protected] * Correspondence: [email protected] (F.S.); [email protected] (Y.M.-F.) Abstract: The new genus Morinagamyces is introduced herein to accommodate the fungus Apiosordaria vermicularis as inferred from a phylogenetic study based on sequences of the internal transcribed spacer region (ITS), the nuclear rDNA large subunit (LSU), and partial fragments of ribosomal polymerase II subunit 2 (rpb2) and β-tubulin (tub2) genes. Morinagamyces vermicularis was analyzed for the production of secondary metabolites, resulting in the isolation of a new depsipeptide named morinagadepsin (1), and the already known chaetone B (3). While the planar structure of 1 was elucidated by extensive 1D- and 2D-NMR analysis and high-resolution mass spectrometry, the absolute configuration of the building blocks Ala, Val, and Leu was determined as -L by Marfey’s method. The configuration of the 3-hydroxy-2-methyldecanyl unit was assigned as 22R,23R by Citation: Harms, K.; Surup, F.; Stadler, M.; Stchigel, A.M.; J-based configuration analysis and Mosher’s method after partial hydrolysis of the morinagadepsin Marin-Felix, Y. -
A Conspectus of the Filamentous Marine Fungi of Sweden
Botanica Marina 2020; 63(2): 141–153 Sanja Tibell*, Leif Tibell, Ka-Lai Pang and E.B. Gareth Jones A conspectus of the filamentous marine fungi of Sweden https://doi.org/10.1515/bot-2018-0114 mostly based on morphological studies, however often the Received 16 December, 2018; accepted 8 May, 2019; online first 2 very small size of these organisms and/or the insufficient July, 2019 morphological distinctive features limit considerably the census of the biodiversity of this component. For marine Abstract: Marine filamentous fungi have been little stud- fungi, the recent application of molecular approaches ied in Sweden, which is remarkable given the depth and offers a useful tool for the census of their biodiversity, width of mycological studies in the country since the time where a wealth of hidden biodiversity is still to be uncov- of Elias Fries. Seventy-four marine fungi are listed for ered. However, there are still different shortcomings and Sweden based on historical records and recent collections, downsides that prevent the extensive use of molecular data of which 16 are new records for the country. New records without the support of classical taxonomic identification. for the country are based on morphological identification Marine wood long remained the main focus for studies of species mainly from marine wood, and most of them of marine filamentous fungi (MFF), however studies by from the Swedish West Coast. In some instances, the iden- Zuccaro et al. (2008), and Suryanarayanan (2012) have tifications have been made by comparisons of sequences shown a rich diversity of these fungi also associated with obtained from cultures with reference sequences in Gen- marine algae (Jones et al. -
9B Taxonomy to Genus
Fungus and Lichen Genera in the NEMF Database Taxonomic hierarchy: phyllum > class (-etes) > order (-ales) > family (-ceae) > genus. Total number of genera in the database: 526 Anamorphic fungi (see p. 4), which are disseminated by propagules not formed from cells where meiosis has occurred, are presently not grouped by class, order, etc. Most propagules can be referred to as "conidia," but some are derived from unspecialized vegetative mycelium. A significant number are correlated with fungal states that produce spores derived from cells where meiosis has, or is assumed to have, occurred. These are, where known, members of the ascomycetes or basidiomycetes. However, in many cases, they are still undescribed, unrecognized or poorly known. (Explanation paraphrased from "Dictionary of the Fungi, 9th Edition.") Principal authority for this taxonomy is the Dictionary of the Fungi and its online database, www.indexfungorum.org. For lichens, see Lecanoromycetes on p. 3. Basidiomycota Aegerita Poria Macrolepiota Grandinia Poronidulus Melanophyllum Agaricomycetes Hyphoderma Postia Amanitaceae Cantharellales Meripilaceae Pycnoporellus Amanita Cantharellaceae Abortiporus Skeletocutis Bolbitiaceae Cantharellus Antrodia Trichaptum Agrocybe Craterellus Grifola Tyromyces Bolbitius Clavulinaceae Meripilus Sistotremataceae Conocybe Clavulina Physisporinus Trechispora Hebeloma Hydnaceae Meruliaceae Sparassidaceae Panaeolina Hydnum Climacodon Sparassis Clavariaceae Polyporales Gloeoporus Steccherinaceae Clavaria Albatrellaceae Hyphodermopsis Antrodiella -
Genetic Diversity and Population Structure of Corollospora Maritima Sensu Lato: New Insights from Population Genetics
Botanica Marina 2016; 59(5): 307–320 Patricia Veleza,*, Jaime Gasca-Pinedab, Akira Nakagiri, Richard T. Hanlin and María C. González Genetic diversity and population structure of Corollospora maritima sensu lato: new insights from population genetics DOI 10.1515/bot-2016-0058 Received 22 June, 2016; accepted 24 August, 2016; online first proven to decrease genetic diversity, a conservation genet- 26 September, 2016 ics approach to assess this matter is urgent. Our results revealed the occurrence of five genetic lineages with dis- Abstract: The study of genetic variation in fungi has been tinctive environmental preferences and an overlapping poor since the development of the theoretical underpin- geographical distribution, agreeing with previous studies nings of population genetics, specifically in marine taxa. reporting physiological races within this species. Corollospora maritima sensu lato is an abundant cosmo- Keywords: dispersal; gene flow; ITS rDNA; marine Asco- politan marine fungus, playing a crucial ecological role in mycota; molecular ecology. the intertidal environment. We evaluated the extent and distribution of the genetic diversity in the nuclear riboso- mal internal transcribed spacer region of 110 isolates of this ascomycete from 19 locations in the Gulf of Mexico, Introduction Caribbean Sea and Pacific Ocean. The diversity estimates Sandy beach ecosystems harbor a unique biodiversity, demonstrated that C. maritima sensu lato possesses a high which is highly adapted to endure dynamic and extreme genetic diversity compared to other cosmopolitan fungi, conditions. This biodiversity performs critical habitat with the highest levels of variability in the Caribbean Sea. functions, providing a range of ecological services not Globally, we registered 28 haplotypes, out of which 11 available through other ecosystems (McLachlan and were specific to the Caribbean Sea, implying these popu- Brown 2006, Schlacher and Connolly 2009). -
A Higher-Level Phylogenetic Classification of the Fungi
mycological research 111 (2007) 509–547 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycres A higher-level phylogenetic classification of the Fungi David S. HIBBETTa,*, Manfred BINDERa, Joseph F. BISCHOFFb, Meredith BLACKWELLc, Paul F. CANNONd, Ove E. ERIKSSONe, Sabine HUHNDORFf, Timothy JAMESg, Paul M. KIRKd, Robert LU¨ CKINGf, H. THORSTEN LUMBSCHf, Franc¸ois LUTZONIg, P. Brandon MATHENYa, David J. MCLAUGHLINh, Martha J. POWELLi, Scott REDHEAD j, Conrad L. SCHOCHk, Joseph W. SPATAFORAk, Joost A. STALPERSl, Rytas VILGALYSg, M. Catherine AIMEm, Andre´ APTROOTn, Robert BAUERo, Dominik BEGEROWp, Gerald L. BENNYq, Lisa A. CASTLEBURYm, Pedro W. CROUSl, Yu-Cheng DAIr, Walter GAMSl, David M. GEISERs, Gareth W. GRIFFITHt,Ce´cile GUEIDANg, David L. HAWKSWORTHu, Geir HESTMARKv, Kentaro HOSAKAw, Richard A. HUMBERx, Kevin D. HYDEy, Joseph E. IRONSIDEt, Urmas KO˜ LJALGz, Cletus P. KURTZMANaa, Karl-Henrik LARSSONab, Robert LICHTWARDTac, Joyce LONGCOREad, Jolanta MIA˛ DLIKOWSKAg, Andrew MILLERae, Jean-Marc MONCALVOaf, Sharon MOZLEY-STANDRIDGEag, Franz OBERWINKLERo, Erast PARMASTOah, Vale´rie REEBg, Jack D. ROGERSai, Claude ROUXaj, Leif RYVARDENak, Jose´ Paulo SAMPAIOal, Arthur SCHU¨ ßLERam, Junta SUGIYAMAan, R. Greg THORNao, Leif TIBELLap, Wendy A. UNTEREINERaq, Christopher WALKERar, Zheng WANGa, Alex WEIRas, Michael WEISSo, Merlin M. WHITEat, Katarina WINKAe, Yi-Jian YAOau, Ning ZHANGav aBiology Department, Clark University, Worcester, MA 01610, USA bNational Library of Medicine, National Center for Biotechnology Information, -
Discovery of the Teleomorph of the Hyphomycete, Sterigmatobotrys Macrocarpa, and Epitypification of the Genus to Holomorphic Status
available online at www.studiesinmycology.org StudieS in Mycology 68: 193–202. 2011. doi:10.3114/sim.2011.68.08 Discovery of the teleomorph of the hyphomycete, Sterigmatobotrys macrocarpa, and epitypification of the genus to holomorphic status M. Réblová1* and K.A. Seifert2 1Department of Taxonomy, Institute of Botany of the Academy of Sciences, CZ – 252 43, Průhonice, Czech Republic; 2Biodiversity (Mycology and Botany), Agriculture and Agri- Food Canada, Ottawa, Ontario, K1A 0C6, Canada *Correspondence: Martina Réblová, [email protected] Abstract: Sterigmatobotrys macrocarpa is a conspicuous, lignicolous, dematiaceous hyphomycete with macronematous, penicillate conidiophores with branches or metulae arising from the apex of the stipe, terminating with cylindrical, elongated conidiogenous cells producing conidia in a holoblastic manner. The discovery of its teleomorph is documented here based on perithecial ascomata associated with fertile conidiophores of S. macrocarpa on a specimen collected in the Czech Republic; an identical anamorph developed from ascospores isolated in axenic culture. The teleomorph is morphologically similar to species of the genera Carpoligna and Chaetosphaeria, especially in its nonstromatic perithecia, hyaline, cylindrical to fusiform ascospores, unitunicate asci with a distinct apical annulus, and tapering paraphyses. Identical perithecia were later observed on a herbarium specimen of S. macrocarpa originating in New Zealand. Sterigmatobotrys includes two species, S. macrocarpa, a taxonomic synonym of the type species, S. elata, and S. uniseptata. Because no teleomorph was described in the protologue of Sterigmatobotrys, we apply Article 59.7 of the International Code of Botanical Nomenclature. We epitypify (teleotypify) both Sterigmatobotrys elata and S. macrocarpa to give the genus holomorphic status, and the name S. -
Amplistroma Gen. Nov. and Its Relation to Wallrothiella, Two Genera with Globose Ascospores and Acrodontium-Like Anamorphs
Mycologia, 101(6), 2009, pp. 904–919. DOI: 10.3852/08-213 # 2009 by The Mycological Society of America, Lawrence, KS 66044-8897 Amplistroma gen. nov. and its relation to Wallrothiella, two genera with globose ascospores and acrodontium-like anamorphs Sabine M. Huhndorf1 INTRODUCTION Botany Department, Field Museum of Natural History, Chicago, Illinois 60605-2496 Genus Wallrothiella Sacc. recently has been rede- scribed and the type species, W. congregata (Wallr.) Andrew N. Miller Sacc., was neotypified based on collections from Illinois Natural History Survey, University of Illinois at France and Ukraine (Re´blova´ and Seifert 2004). Urbana-Champaign, Champaign, Illinois 61820-6970 The genus is distinct in its globose, long-necked Matthew Greif ascomata, its wide, long, tapering paraphyses and its Botany Department, Field Museum of Natural History, cylindrical, stipitate asci with eight, small, globose Chicago, Illinois 60605-2496 ascospores. Surveys of wood-inhabiting Sordariomy- cetes in Puerto Rico and Great Smoky Mountains Gary J. Samuels National Park in the eastern United States uncovered USDA-ARS, Systematic Mycology & Microbiology several specimens that match the description of W. Laboratory, Room 304, B-011A, 10300 Baltimore Avenue, Beltsville, Maryland 20705-2350 congregata, and a collection from Puerto Rico was obtained in culture. A few years earlier several specimens that shared key characteristics of W. Abstract: Amplistroma is described as a new genus congregata were conveyed to us. These specimens for A. carolinianum, A. diminutisporum, A. guianense, have the same distinctive eight, globose-spored asci A. hallingii, A. ravum, A. tartareum and A. xylar- and wide paraphyses that are long and tapering above ioides.SpeciesofAmplistroma are distinguished by the asci. -
An Annotated Check-List of Ascomycota Reported from Soil and Other Terricolous Substrates in Egypt A
Journal of Basic & Applied Mycology 2 (2011): 1-27 1 © 2010 by The Society of Basic & Applied Mycology (EGYPT) An annotated check-list of Ascomycota reported from soil and other terricolous substrates in Egypt A. F. Moustafa* & A. M. Abdel – Azeem Department of Botany, Faculty of Science, University of Suez *Corresponding author: e-mail: Canal, Ismailia 41522, Egypt [email protected] Received 26/6/2010, Accepted 6/4 /2011 ____________________________________________________________________________________________________ Abstract: By screening of available sources of information, it was possible to figure out a range of 310 taxa that could be representing Egyptian Ascomycota up to the present time. In this treatment, concern was given to ascomycetous fungi of almost all terricolous substrates while phytopathogenic and aquatic forms are not included. According to the scheme proposed by Kirk et al. (2008), reported taxa in Egypt belonged to 88 genera in 31 families, and 11 orders. In view of this scheme, very few numbers of taxa remained without certain taxonomic position (incertae sedis). It is also worthy to be mentioned that among species included in the list, twenty-eight are introduced to the ascosporic mycobiota as novel taxa based on type materials collected from Egyptian habitats. The list includes also 19 species which are considered new records to the general mycobiota of Egypt. When species richness and substrate preference, as important ecological parameters, are considered, it has been noticed that Egyptian Ascomycota shows some interesting features noteworthy to be mentioned. At the substrate level, clay soils, came first by hosting a range of 108 taxa followed by desert soils (60 taxa). -
Sequencing Abstracts Msa Annual Meeting Berkeley, California 7-11 August 2016
M S A 2 0 1 6 SEQUENCING ABSTRACTS MSA ANNUAL MEETING BERKELEY, CALIFORNIA 7-11 AUGUST 2016 MSA Special Addresses Presidential Address Kerry O’Donnell MSA President 2015–2016 Who do you love? Karling Lecture Arturo Casadevall Johns Hopkins Bloomberg School of Public Health Thoughts on virulence, melanin and the rise of mammals Workshops Nomenclature UNITE Student Workshop on Professional Development Abstracts for Symposia, Contributed formats for downloading and using locally or in a Talks, and Poster Sessions arranged by range of applications (e.g. QIIME, Mothur, SCATA). 4. Analysis tools - UNITE provides variety of analysis last name of primary author. Presenting tools including, for example, massBLASTer for author in *bold. blasting hundreds of sequences in one batch, ITSx for detecting and extracting ITS1 and ITS2 regions of ITS 1. UNITE - Unified system for the DNA based sequences from environmental communities, or fungal species linked to the classification ATOSH for assigning your unknown sequences to *Abarenkov, Kessy (1), Kõljalg, Urmas (1,2), SHs. 5. Custom search functions and unique views to Nilsson, R. Henrik (3), Taylor, Andy F. S. (4), fungal barcode sequences - these include extended Larsson, Karl-Hnerik (5), UNITE Community (6) search filters (e.g. source, locality, habitat, traits) for 1.Natural History Museum, University of Tartu, sequences and SHs, interactive maps and graphs, and Vanemuise 46, Tartu 51014; 2.Institute of Ecology views to the largest unidentified sequence clusters and Earth Sciences, University of Tartu, Lai 40, Tartu formed by sequences from multiple independent 51005, Estonia; 3.Department of Biological and ecological studies, and for which no metadata Environmental Sciences, University of Gothenburg, currently exists. -
Prilozi Contributions
ISSN 1857–9027 e-ISSN 1857–9949 MAKEDONSKA AKADEMIJA NA NAUKITE I UMETNOSTITE ODDELENIE ZA PRIRODNO-MATEMATI^KI I BIOTEHNI^KI NAUKI MACEDONIAN ACADEMY OF SCIENCES AND ARTS SECTION OF NATURAL, MATHEMATICAL AND BIOTECHNICAL SCIENCES PRILOZI CONTRIBUTIONS 40 (2) СКОПЈЕ – SKOPJE 2019 Publisher: Macedonian Academy of Sciences and Arts Editor-in-Chief Gligor Jovanovski, Macedonia Guest editors Kiril Sotirovski, Macedonia Viktor Gjamovski, Macedonia Co-editor-in-Chief Dončo Dimovski, Macedonia E d i t o r i a l B o a r d: Sjur Baardsen, Norway Lars Lonnstedt, Sweden Ivan Blinkov, Macedonia Vlado Matevski, Macedonia Blažo Boev, Macedonia Dubravka Matković-Čalogović, Croatia Stevo Božinovski, USA Nenad Novkovski, Macedonia Mitrofan Cioban, Moldova Nikola Panov, Macedonia Andraž Čarni, Slovenia Shushma Patel, England Ludwik Dobrzynski, France Dejan Prelević, Germany Gjorgji Filipovski, Macedonia Kiril Sotirovski, Macedonia Viktor Gjamovski, Macedonia Hari M. Srivastava, Canada Marjan Gušev, Macedonia Ivo Šlaus, Croatia Gordan Karaman, Montenegro Bogdan Šolaja, Serbia Borislav Kobiljski, Serbia Franci Štampar, Slovenia Dénes Loczy, Hungary Petar Zhelev, Bulgaria * Editorial assistant: Sonja Malinovska * Macedonian language adviser: Sofija Cholakovska-Popovska * Technical editor: Sonja Malinovska * Printed by: MAR-SAZ – Skopje * Number of copies: 300 * 2019 Published twice a year The Contributions, Sec. Nat. Math. Biotech. Sci. is indexed in: Chemical Abstracts, Mathematical Reviews, Google Scholar, EBSCO and DOAJ http://manu.edu.mk/contributions/NMBSci/ Прилози, Одд. прир. мат. биотех. науки, МАНУ Том Бр. стр. Скопје 40 2 145–276 2019 Contributions, Sec. Nat. Math. Biotech. Sci., MASA Vol. No. pp. Skopje T ABL E O F CONTENTS Marjan Andreevski, Duško Mukaetov CONTENT OF EXCHANGEABLE CATIONS IN ALBIC LUVISOLS IN THE REPUBLIC OF MACEDONIA ........................................................................................................