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PDF Output of CLIC (Clustering by Inferred Co-Expression) PDF Output of CLIC (clustering by inferred co-expression) Dataset: Num of genes in input gene set: 11 Total number of genes: 16493 CLIC PDF output has three sections: 1) Overview of Co-Expression Modules (CEMs) Heatmap shows pairwise correlations between all genes in the input query gene set. Red lines shows the partition of input genes into CEMs, ordered by CEM strength. Each row shows one gene, and the brightness of squares indicates its correlations with other genes. Gene symbols are shown at left side and on the top of the heatmap. 2) Details of each CEM and its expansion CEM+ Top panel shows the posterior selection probability (dataset weights) for top GEO series datasets. Bottom panel shows the CEM genes (blue rows) as well as expanded CEM+ genes (green rows). Each column is one GEO series dataset, sorted by their posterior probability of being selected. The brightness of squares indicates the gene's correlations with CEM genes in the corresponding dataset. CEM+ includes genes that co-express with CEM genes in high-weight datasets, measured by LLR score. 3) Details of each GEO series dataset and its expression profile: Top panel shows the detailed information (e.g. title, summary) for the GEO series dataset. Bottom panel shows the background distribution and the expression profile for CEM genes in this dataset. Overview of Co-Expression Modules (CEMs) with Dataset Weighting Scale of average Pearson correlations Num of Genes in Query Geneset: 11. Num of CEMs: 1. 0.0 0.2 0.4 0.6 0.8 1.0 Tmem231 B9d1 Tmem216 Tctn2 Cep290 Cc2d2a Mks1 Tmem17 B9d2 Ahi1 Tmem67 Tmem231 B9d1 Tmem216 Tctn2 Cep290 Cc2d2a CEM 1 (19 datasets) Mks1 Tmem17 B9d2 Ahi1 Tmem67 1110051M20Rik 1110004E09Rik Symbol Num ofCEMGenes:11.Predicted338.SelectedDatasets:19.Strength:0.3 CEM 1,Geneset"[G]TCTN-B9Dcomplex",Page1 Tmem107 Tmem216 Tmem231 Fam179b Fam229b Dync2h1 Ccdc104 Dync2li1 Ccdc173 Tmem67 Tmem17 Traf3ip1 Cc2d2a Cep290 Ccp110 Spata7 Spice1 Nphp1 Nup35 Wdr31 Wdr34 Enkd1 Morn2 Otub2 Crocc Dnal4 Rabl2 Lekr1 Tctn2 Ttc26 Ift122 Lztfl1 Mks1 Dpcd Gas8 Bbs5 Bbs1 Bbs2 B9d2 B9d1 Rpgr Ahi1 Ttc8 Ift88 Ift80 Ift74 Arl3 Arl6 0.0 1.0 GSE31972 [6] GSE27630 [8] GSE9441 [36] Only showingfirst200datasets-Seetxtoutputforfulldetails. GSE26299 [108] GSE29318 [9] GSE27605 [8] GSE15872 [18] GSE47196 [6] GSE31561 [36] GSE31797 [6] GSE34206 [8] GSE6540 [12] GSE28593 [9] GSE32529 [224] GSE16585 [31] GSE13106 [10] GSE21606 [6] GSE56777 [8] GSE45820 [6] GSE21568 [12] GSE32095 [24] GSE49346 [6] GSE23895 [18] GSE24726 [8] GSE27546 [51] GSE23408 [39] GSE4734 [61] GSE1871 [12] GSE54056 [12] GSE40087 [15] GSE22824 [24] GSE40412 [14] GSE10902 [6] GSE19729 [14] GSE49128 [17] GSE34126 [19] GSE16496 [102] GSE15760 [6] GSE9760 [12] GSE31940 [8] GSE53951 [10] GSE5245 [16] GSE51365 [28] GSE11165 [6] GSE34423 [40] GSE24695 [9] GSE34279 [30] GSE21193 [10] GSE12948 [9] GSE26476 [6] GSE27713 [7] GSE5671 [18] GSE5127 [18] GSE18396 [6] GSE31849 [18] GSE28457 [24] GSE40156 [42] GSE3181 [6] GSE21309 [9] GSE27195 [6] GSE50122 [10] GSE56482 [8] GSE7069 [8] GSE5313 [6] GSE15741 [6] GSE23200 [6] GSE4260 [6] GSE7141 [6] GSE28408 [6] GSE28823 [12] GSE20177 [14] GSE8357 [6] GSE40716 [12] GSE37431 [6] GSE33770 [8] GSE24813 [10] GSE13873 [27] GSE16110 [16] GSE17263 [6] GSE40856 [8] GSE17709 [18] GSE14004 [9] GSE38693 [8] GSE6383 [6] GSE16675 [72] GSE57425 [6] GSE29081 [6] GSE27675 [14] GSE36814 [20] GSE20954 [14] GSE22448 [6] GSE38215 [11] GSE21900 [12] GSE17794 [44] GSE36384 [12] GSE9338 [42] GSE6846 [6] GSE31744 [8] GSE32963 [6] GSE18010 [29] GSE31570 [6] GSE46797 [6] GSE30488 [52] GSE27568 [16] GSE15772 [8] GSE13227 [6] GSE27811 [9] GSE42601 [6] GSE45968 [6] GSE58296 [9] GSE42260 [6] GSE48203 [9] GSE13611 [8] GSE18907 [12] GSE14843 [6] GSE21393 [6] GSE11990 [20] GSE43713 [16] GSE48790 [8] GSE4695 [6] GSE18326 [8] GSE51483 [45] GSE47425 [7] GSE22073 [6] GSE48935 [12] GSE17316 [12] GSE39621 [51] GSE55238 [28] GSE18358 [10] GSE40230 [15] GSE15871 [18] GSE2527 [6] GSE34765 [6] GSE13563 [6] GSE38672 [6] GSE13421 [8] GSE4040 [6] GSE21755 [25] GSE17266 [59] GSE45143 [6] GSE27717 [11] GSE5891 [6] GSE23781 [6] GSE27159 [8] GSE6116 [70] GSE6875 [8] GSE4193 [8] GSE26308 [12] GSE58214 [6] GSE29648 [10] GSE57543 [6] GSE14007 [8] GSE35435 [6] GSE30873 [6] CEM+ CEM GSE11291 [60] GSE31208 [8] GSE31792 [18] GSE11572 [12] GSE4323 [6] GSE34839 [6] 0.0 GSE30863 [20] GSE40443 [6] GSE9044 [6] Scale ofaveragePearsoncorrelations GSE7381 [6] GSE46209 [21] GSE28559 [30] GSE19338 [24] GSE39273 [6] GSE6285 [24] 0.2 GSE8024 [8] GSE8726 [7] GSE17553 [16] GSE13526 [6] GSE24207 [73] GSE4535 [6] GSE20570 [6] GSE40282 [6] GSE47872 [6] 0.4 GSE51608 [6] GSE6526 [16] GSE23600 [10] GSE17097 [20] GSE39391 [21] GSE10556 [6] GSE17886 [16] GSE15267 [8] GSE11386 [15] 0.6 GSE27378 [8] GSE15724 [9] GSE17112 [8] GSE13229 [6] GSE10113 [12] GSE43635 [9] GSE27261 [8] GSE46150 [8] GSE51108 [6] 0.8 GSE31938 [8] GSE8503 [6] GSE16874 [12] GSE46500 [6] Score 9.68 9.98 10.01 10.06 10.10 10.17 10.50 10.59 10.65 10.65 10.86 10.91 10.98 11.22 11.27 11.42 11.44 11.48 11.49 11.71 12.15 12.15 12.46 13.14 13.59 13.69 13.74 13.92 14.21 14.23 14.56 14.73 14.79 14.82 14.94 15.00 16.35 17.01 17.06 1.0 Notes 1810043G02Rik 2610301B20Rik Symbol Num ofCEMGenes:11.Predicted338.SelectedDatasets:19.Strength:0.3 CEM 1,Geneset"[G]TCTN-B9Dcomplex",Page2 Fam216a Ankdd1b Abhd14a Ccdc157 Efcab12 Chchd6 Ccdc39 Ccdc57 Dyx1c1 Mettl10 Btbd10 Cluap1 Pih1d2 Efcab7 Trim23 Zbtb26 Zfp446 Med31 Wdr35 Wdr78 Wdr47 Wdr60 Cops3 Wdr90 Wdr19 Cep19 Alms1 Cep41 Mdm1 Micu3 Pacrg Cetn2 Nme7 Nme5 Emc8 Stk30 Stk36 Pias2 Ttc25 Map9 Dph6 Cby1 Bbs9 Nek4 Tchp Lca5 Ttc5 Ift57 0.0 1.0 GSE31972 [6] GSE27630 [8] GSE9441 [36] Only showingfirst200datasets-Seetxtoutputforfulldetails. GSE26299 [108] GSE29318 [9] GSE27605 [8] GSE15872 [18] GSE47196 [6] GSE31561 [36] GSE31797 [6] GSE34206 [8] GSE6540 [12] GSE28593 [9] GSE32529 [224] GSE16585 [31] GSE13106 [10] GSE21606 [6] GSE56777 [8] GSE45820 [6] GSE21568 [12] GSE32095 [24] GSE49346 [6] GSE23895 [18] GSE24726 [8] GSE27546 [51] GSE23408 [39] GSE4734 [61] GSE1871 [12] GSE54056 [12] GSE40087 [15] GSE22824 [24] GSE40412 [14] GSE10902 [6] GSE19729 [14] GSE49128 [17] GSE34126 [19] GSE16496 [102] GSE15760 [6] GSE9760 [12] GSE31940 [8] GSE53951 [10] GSE5245 [16] GSE51365 [28] GSE11165 [6] GSE34423 [40] GSE24695 [9] GSE34279 [30] GSE21193 [10] GSE12948 [9] GSE26476 [6] GSE27713 [7] GSE5671 [18] GSE5127 [18] GSE18396 [6] GSE31849 [18] GSE28457 [24] GSE40156 [42] GSE3181 [6] GSE21309 [9] GSE27195 [6] GSE50122 [10] GSE56482 [8] GSE7069 [8] GSE5313 [6] GSE15741 [6] GSE23200 [6] GSE4260 [6] GSE7141 [6] GSE28408 [6] GSE28823 [12] GSE20177 [14] GSE8357 [6] GSE40716 [12] GSE37431 [6] GSE33770 [8] GSE24813 [10] GSE13873 [27] GSE16110 [16] GSE17263 [6] GSE40856 [8] GSE17709 [18] GSE14004 [9] GSE38693 [8] GSE6383 [6] GSE16675 [72] GSE57425 [6] GSE29081 [6] GSE27675 [14] GSE36814 [20] GSE20954 [14] GSE22448 [6] GSE38215 [11] GSE21900 [12] GSE17794 [44] GSE36384 [12] GSE9338 [42] GSE6846 [6] GSE31744 [8] GSE32963 [6] GSE18010 [29] GSE31570 [6] GSE46797 [6] GSE30488 [52] GSE27568 [16] GSE15772 [8] GSE13227 [6] GSE27811 [9] GSE42601 [6] GSE45968 [6] GSE58296 [9] GSE42260 [6] GSE48203 [9] GSE13611 [8] GSE18907 [12] GSE14843 [6] GSE21393 [6] GSE11990 [20] GSE43713 [16] GSE48790 [8] GSE4695 [6] GSE18326 [8] GSE51483 [45] GSE47425 [7] GSE22073 [6] GSE48935 [12] GSE17316 [12] GSE39621 [51] GSE55238 [28] GSE18358 [10] GSE40230 [15] GSE15871 [18] GSE2527 [6] GSE34765 [6] GSE13563 [6] GSE38672 [6] GSE13421 [8] GSE4040 [6] GSE21755 [25] GSE17266 [59] GSE45143 [6] GSE27717 [11] GSE5891 [6] GSE23781 [6] GSE27159 [8] GSE6116 [70] GSE6875 [8] GSE4193 [8] GSE26308 [12] GSE58214 [6] GSE29648 [10] GSE57543 [6] GSE14007 [8] GSE35435 [6] GSE30873 [6] CEM+ CEM GSE11291 [60] GSE31208 [8] GSE31792 [18] GSE11572 [12] GSE4323 [6] GSE34839 [6] 0.0 GSE30863 [20] GSE40443 [6] GSE9044 [6] Scale ofaveragePearsoncorrelations GSE7381 [6] GSE46209 [21] GSE28559 [30] GSE19338 [24] GSE39273 [6] GSE6285 [24] 0.2 GSE8024 [8] GSE8726 [7] GSE17553 [16] GSE13526 [6] GSE24207 [73] GSE4535 [6] GSE20570 [6] GSE40282 [6] GSE47872 [6] 0.4 GSE51608 [6] GSE6526 [16] GSE23600 [10] GSE17097 [20] GSE39391 [21] GSE10556 [6] GSE17886 [16] GSE15267 [8] GSE11386 [15] 0.6 GSE27378 [8] GSE15724 [9] GSE17112 [8] GSE13229 [6] GSE10113 [12] GSE43635 [9] GSE27261 [8] GSE46150 [8] GSE51108 [6] 0.8 GSE31938 [8] GSE8503 [6] GSE16874 [12] GSE46500 [6] Score 5.98 5.98 5.98 6.04 6.06 6.10 6.11 6.13 6.25 6.27 6.35 6.41 6.41 6.48 6.49 6.61 6.62 6.65 6.77 6.80 6.83 6.86 7.01 7.16 7.25 7.30 7.50 7.51 7.66 7.71 7.71 7.94 8.00 8.04 8.07 8.26 8.47 8.57 8.58 8.73 8.78 8.83 9.07 9.13 9.15 9.25 9.30 9.34 9.43 9.62 1.0 Notes B230118H07Rik A330021E22Rik Symbol Num ofCEMGenes:11.Predicted338.SelectedDatasets:19.Strength:0.3 CEM 1,Geneset"[G]TCTN-B9Dcomplex",Page3 AK129341 Hsp90aa1 Ccpg1os Rps6ka6 Ccdc181 Ankrd42 Prpsap2 Pwwp2a Fam98b Zswim1 Gemin8 Abhd10 Dzank1 Skiv2l2 Tada2a Gm166 Nap1l1 Trim37 Zfp329 Zfp763 Slc7a6 Glt8d1 Dalrd3 Wdr73 Cspp1 P4htm Ube3c Lyrm4 Bbs12 Soga2 Cep76 Elovl4 Tpgs2 Tusc3 Ccar2 Prps1 Btf3l4 Cetn4 Pcgf1 Pcgf6 Ift140 Fbxl2 Mns1 Prepl Eml1 Ppil4 Phc1 Iqcg 0.0 1.0 GSE31972 [6] GSE27630 [8] GSE9441 [36] Only showingfirst200datasets-Seetxtoutputforfulldetails. GSE26299 [108] GSE29318 [9] GSE27605 [8] GSE15872 [18] GSE47196 [6] GSE31561 [36] GSE31797 [6] GSE34206 [8] GSE6540 [12] GSE28593 [9] GSE32529 [224] GSE16585 [31] GSE13106 [10] GSE21606 [6] GSE56777 [8] GSE45820 [6] GSE21568 [12] GSE32095 [24] GSE49346 [6] GSE23895 [18] GSE24726 [8] GSE27546 [51] GSE23408 [39] GSE4734 [61] GSE1871 [12] GSE54056 [12] GSE40087 [15] GSE22824 [24] GSE40412
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