The Phylogenetic Position of the Bathyal Harpacticoids Aspinothorax Gen
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Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans by Robert George Young A Thesis presented to The University of Guelph In partial fulfilment of requirements for the degree of Doctor of Philosophy in Integrative Biology Guelph, Ontario, Canada © Robert George Young, March, 2016 ABSTRACT MOLECULAR SPECIES DELIMITATION AND BIOGEOGRAPHY OF CANADIAN MARINE PLANKTONIC CRUSTACEANS Robert George Young Advisors: University of Guelph, 2016 Dr. Sarah Adamowicz Dr. Cathryn Abbott Zooplankton are a major component of the marine environment in both diversity and biomass and are a crucial source of nutrients for organisms at higher trophic levels. Unfortunately, marine zooplankton biodiversity is not well known because of difficult morphological identifications and lack of taxonomic experts for many groups. In addition, the large taxonomic diversity present in plankton and low sampling coverage pose challenges in obtaining a better understanding of true zooplankton diversity. Molecular identification tools, like DNA barcoding, have been successfully used to identify marine planktonic specimens to a species. However, the behaviour of methods for specimen identification and species delimitation remain untested for taxonomically diverse and widely-distributed marine zooplanktonic groups. Using Canadian marine planktonic crustacean collections, I generated a multi-gene data set including COI-5P and 18S-V4 molecular markers of morphologically-identified Copepoda and Thecostraca (Multicrustacea: Hexanauplia) species. I used this data set to assess generalities in the genetic divergence patterns and to determine if a barcode gap exists separating interspecific and intraspecific molecular divergences, which can reliably delimit specimens into species. I then used this information to evaluate the North Pacific, Arctic, and North Atlantic biogeography of marine Calanoida (Hexanauplia: Copepoda) plankton. -
New Species Belonging to the Family Porcellidiidae (Harpacticoida: Copepoda) from Kioloa, New South Wales, Australia
AUSTRALIAN MUSEUM SCIENTIFIC PUBLICATIONS Harris, V. A. P., 1994. New species belonging to the family Porcellidiidae (Harpacticoida: Copepoda) from Kioloa, New South Wales, Australia. Records of the Australian Museum 46(3): 303–340. [17 November 1994]. doi:10.3853/j.0067-1975.46.1994.8 ISSN 0067-1975 Published by the Australian Museum, Sydney naturenature cultureculture discover discover AustralianAustralian Museum Museum science science is is freely freely accessible accessible online online at at www.australianmuseum.net.au/publications/www.australianmuseum.net.au/publications/ 66 CollegeCollege Street,Street, SydneySydney NSWNSW 2010,2010, AustraliaAustralia Records of the Australian Museum (1994) Vol. 46: 303-340. ISSN 0067-1975 303 New Species belonging to the Family PorceIlidiidae (Harpacticoida: Copepoda) from Kioloa, New South Wales, Australia V.A.P. HARRls Visiting Fellow, Division of Botany and Zoology, Life Sciences, Australian National University PO Box 4, Canberra, ACT 2600, Australia ABSTRACT. Six new species referred to four new genera and one new species of Porcellidium belonging to the family Porcellidiidae (Harpacticoida: Copepoda) are described from Kioloa, a locality on the southern coast of New South Wales, Australia. Characteristic features defining the following new genera are given together with descriptions of new species: Brevifrons n.gen., B. faviolatum n.sp., Kioloaria n.gen., K. sesquimaculata n.sp., Murramia n.gen., M. magna n.sp., M. bicincta n.sp., Tectacingulum n.gen., T. tumidum n.sp. and T. nigrum n.sp. A new species of Porcellidium, P. londonii n.sp., is described and referred to the 'Fimbriatum' group. The structure and taxonomic significance of the hyaline fringe and male antennule are discussed together with other characters that have been used to define new genera. -
Copepoda: Harpacticoida) from Seagrass in Port Phillip Bay, Victoria, Australia, and a Review of the Family
JOURNAL OF CRUSTACEAN BIOLOGY, 21(3): 653–664, 2001 PORCELLIDIUM POOREI, A NEW SPECIES OF PORCELLIDIIDAE (COPEPODA: HARPACTICOIDA) FROM SEAGRASS IN PORT PHILLIP BAY, VICTORIA, AUSTRALIA, AND A REVIEW OF THE FAMILY Genefor K. Walker-Smith Crustacea Laboratory, Museum Victoria, GPO Box 666E, Melbourne, Victoria 3001, Australia, and Zoology Department, The University of Melbourne, Parkville, Victoria 3010, Australia ([email protected]) Downloaded from https://academic.oup.com/jcb/article/21/3/653/2679746 by guest on 28 September 2021 ABSTRACT A new species of Porcellidiidae, Porcellidium poorei, is described from the seagrass beds of Port Phillip Bay, Victoria, Australia. The validity of all genera of Porcellidiidae is discussed, and Mur- ramia, Acutiramus, Kioloaria, Kensakia, and Mucrorostrum are synonymised with Porcellidium. The family diagnosis is expanded. A key to the genera is provided. The family Porcellidiidae Boeck, 1865, with Nomarski interference phase contrast and a drawing comprises 36 species in the genus Porcellid- tube. Scale bars are labelled with lower case letters that ium Claus, 1860, and relatively few others in correspond directly to the figure with the same letter. nine smaller genera (Harris, 1994; Harris and SYSTEMATICS Robertson, 1994; Harris and Iwasaki, 1996b; Porcellidiidae Boeck, 1865 Harris and Iwasaki, 1997). A survey of the Porcellidina Boeck, 1865: 279, 280. harpacticoid copepod fauna of Port Phillip Porcellidiinae.—Brady, 1880: 4, 164. Bay, Victoria, Australia, revealed an unde- Porcellidiidae.—Sars, 1904: 74.—Lang, 1948: 417.— scribed species of Porcellidiidae living on the Harris and Robertson, 1994: 262.—Huys et al., 1996: seagrass Heterozostera tasmanica (Martens 304–306. ex Ascherson) den Hartog. -
Ivanenko V.N. 2006. Copepoda (Introduction). In: D. DESBRYERES, M
Ivanenko V.N. 2006. Copepoda (Introduction). In: D. DESBRYERES, M. SEGONZAC & M. BRIGHT (Eds.) Handbook of Deep-Sea Hydrothermal Vent Fauna. Second edition. DENISIA, 18: 316-317 Ivanenko V.N. & Defaye D. 2006. Copepoda. In: D. DESBRYERES, M. SEGONZAC & M. BRIGHT (Eds.) Handbook of Deep-Sea Hydrothermal Vent Fauna. Second edition. DENISIA, 18: 318-355 Viatcheslav N. IVANENKO, Ph.D. Department of Invertebrate Zoology Biological Faculty, Moscow State University Leninskie Gory, 1-12 Moscow 119992, Russia http://www.nature.ok.ru/invertebrates/cv.html Handbook of Deep-Sea Hydrothermal Vent Fauna D. DESBRYÈRES, M. SEGONZAC & M. BRIGHT (Eds.) Denisia 18, 544 pages (27 x 21 cm) ISSN: 1608-8700; ISBN: 10 3-85474-154-5 or ISBN: 13 978-3-85474-154-1 Ordering via e-mail: [email protected] Price: 49 € (excl. shipping) The second extensively expanded edition of the "Handbook of Deep-Sea Hydrothermal Vent Fauna" gives on overview of our current knowledge on the animals living at hydrothermal vents. The discovery of hydrothermal vents and progresses made during almost 30 years are outlined. A brief introduction is given on hydrothermal vent meiofauna and parasites. Geographic maps and a table of mid-ocean ridges and back-arc basins with the major known hydrothermal vent fields, their location and depth range and the most prominent vent sites are provided. Higher taxa are presented individually with information on the current taxonomic and biogeographic status, the number of species described, recommendations for fixation, and schematic drawings, which aim to help non-specialists to identify the animals. 86 authors contributed with their expertise to create a comprehensive database on animals living at hydrothermal vents, which contains information on the morphology, biology, and geographic distribution of more than 500 currently described species belonging to one protist and 12 animal phyla. -
A New Minute Ectosymbiotic Harpacticoid Copepod Living on the Sea Cucumber Eupentacta Fraudatrix in the East/Japan Sea
A new minute ectosymbiotic harpacticoid copepod living on the sea cucumber Eupentacta fraudatrix in the East/Japan Sea Jisu Yeom1, Mikhail A. Nikitin2, Viatcheslav N. Ivanenko3 and Wonchoel Lee1 1 Department of Life Science, Hanyang University, Seoul, South Korea 2 A.N. Belozersky Institute of Physico-chemical Biology, Lomonosov Moscow State University, Moscow, Russia 3 Department of Invertebrate Zoology, Biological Faculty, Lomonosov Moscow State University, Moscow, Russia ABSTRACT The ectosymbiotic copepods, Vostoklaophonte eupenta gen. & sp. nov. associated with the sea cucumber Eupentacta fraudatrix, was found in the subtidal zone of Peter the Great Bay, East/Japan Sea. The new genus, Vostoklaophonte, is similar to Microchelonia in the flattened body form, reduced mandible, maxillule and maxilla, but with well-developed prehensile maxilliped, and in the reduced segmentation and setation of legs 1–5. Most appendages of the new genus are more primitive than those of Microchelonia. The inclusion of the symbiotic genera Microchelonia and Vostoklaophonte gen. nov. in Laophontidae, as well as their close phylogenetic relationships, are supported by morphological observations and molecular data. This is the third record of laophontid harpacticoid copepods living in symbiosis with sea cucumbers recorded from the Korean and Californian coasts. Subjects Biodiversity, Marine Biology, Taxonomy Keywords Copepoda, Laophontidae, Eupentacta fraudatrix, Ectosymbiosis, New genus, 18S rDNA INTRODUCTION 21 December 2017 Submitted Symbiotic harpacticoids that use holothurians as hosts are rarely reported compared to Accepted 16 May 2018 Published 14 June 2018 the orders Poecilostomatoida and Siphonostomatoida (Humes, 1980; Ho, 1982; Jangoux, Corresponding author 1990; Mahatma, Arbizu & Ivanenko, 2008; Avdeev, 2017). Among harpacticoids, only one Wonchoel Lee, [email protected] species of Tisbidae Stebbing, 1910—Sacodiscus humesi Stock, 1960— and two species of Academic editor Laophontidae T. -
Hydrothermal Vent Periphery Invertebrate Community Habitat Preferences of the Lau Basin
California State University, Monterey Bay Digital Commons @ CSUMB Capstone Projects and Master's Theses Capstone Projects and Master's Theses Summer 2020 Hydrothermal Vent Periphery Invertebrate Community Habitat Preferences of the Lau Basin Kenji Jordi Soto California State University, Monterey Bay Follow this and additional works at: https://digitalcommons.csumb.edu/caps_thes_all Recommended Citation Soto, Kenji Jordi, "Hydrothermal Vent Periphery Invertebrate Community Habitat Preferences of the Lau Basin" (2020). Capstone Projects and Master's Theses. 892. https://digitalcommons.csumb.edu/caps_thes_all/892 This Master's Thesis (Open Access) is brought to you for free and open access by the Capstone Projects and Master's Theses at Digital Commons @ CSUMB. It has been accepted for inclusion in Capstone Projects and Master's Theses by an authorized administrator of Digital Commons @ CSUMB. For more information, please contact [email protected]. HYDROTEHRMAL VENT PERIPHERY INVERTEBRATE COMMUNITY HABITAT PREFERENCES OF THE LAU BASIN _______________ A Thesis Presented to the Faculty of Moss Landing Marine Laboratories California State University Monterey Bay _______________ In Partial Fulfillment of the Requirements for the Degree Master of Science in Marine Science _______________ by Kenji Jordi Soto Spring 2020 CALIFORNIA STATE UNIVERSITY MONTEREY BAY The Undersigned Faculty Committee Approves the Thesis of Kenji Jordi Soto: HYDROTHERMAL VENT PERIPHERY INVERTEBRATE COMMUNITY HABITAT PREFERENCES OF THE LAU BASIN _____________________________________________ -
Calibration of the Multi-Gene Metabarcoding Approach As an Efficient and Accurate Biomonitoring Tool
Calibration of the multi-gene metabarcoding approach as an efficient and accurate biomonitoring tool Guang Kun Zhang Department of Biology McGill University, Montréal April 2017 A thesis submitted to McGill University in partial fulfillment of the requirements of the degree of Master of Science © Guang Kun Zhang 2017 1 TABLE OF CONTENTS Abstract .................................................................................................................. 3 Résumé .................................................................................................................... 4 Acknowledgements ................................................................................................ 5 Contributions of Authors ...................................................................................... 6 General Introduction ............................................................................................. 7 References ..................................................................................................... 9 Manuscript: Towards accurate species detection: calibrating metabarcoding methods based on multiplexing multiple markers.................................................. 13 References ....................................................................................................32 Tables ...........................................................................................................41 Figures ........................................................................................................ -
(Gulf Watch Alaska) Final Report the Seward Line: Marine Ecosystem
Exxon Valdez Oil Spill Long-Term Monitoring Program (Gulf Watch Alaska) Final Report The Seward Line: Marine Ecosystem monitoring in the Northern Gulf of Alaska Exxon Valdez Oil Spill Trustee Council Project 16120114-J Final Report Russell R Hopcroft Seth Danielson Institute of Marine Science University of Alaska Fairbanks 905 N. Koyukuk Dr. Fairbanks, AK 99775-7220 Suzanne Strom Shannon Point Marine Center Western Washington University 1900 Shannon Point Road, Anacortes, WA 98221 Kathy Kuletz U.S. Fish and Wildlife Service 1011 East Tudor Road Anchorage, AK 99503 July 2018 The Exxon Valdez Oil Spill Trustee Council administers all programs and activities free from discrimination based on race, color, national origin, age, sex, religion, marital status, pregnancy, parenthood, or disability. The Council administers all programs and activities in compliance with Title VI of the Civil Rights Act of 1964, Section 504 of the Rehabilitation Act of 1973, Title II of the Americans with Disabilities Action of 1990, the Age Discrimination Act of 1975, and Title IX of the Education Amendments of 1972. If you believe you have been discriminated against in any program, activity, or facility, or if you desire further information, please write to: EVOS Trustee Council, 4230 University Dr., Ste. 220, Anchorage, Alaska 99508-4650, or [email protected], or O.E.O., U.S. Department of the Interior, Washington, D.C. 20240. Exxon Valdez Oil Spill Long-Term Monitoring Program (Gulf Watch Alaska) Final Report The Seward Line: Marine Ecosystem monitoring in the Northern Gulf of Alaska Exxon Valdez Oil Spill Trustee Council Project 16120114-J Final Report Russell R Hopcroft Seth L. -
Southeastern Regional Taxonomic Center South Carolina Department of Natural Resources
Southeastern Regional Taxonomic Center South Carolina Department of Natural Resources http://www.dnr.sc.gov/marine/sertc/ Southeastern Regional Taxonomic Center Invertebrate Literature Library (updated 9 May 2012, 4056 entries) (1958-1959). Proceedings of the salt marsh conference held at the Marine Institute of the University of Georgia, Apollo Island, Georgia March 25-28, 1958. Salt Marsh Conference, The Marine Institute, University of Georgia, Sapelo Island, Georgia, Marine Institute of the University of Georgia. (1975). Phylum Arthropoda: Crustacea, Amphipoda: Caprellidea. Light's Manual: Intertidal Invertebrates of the Central California Coast. R. I. Smith and J. T. Carlton, University of California Press. (1975). Phylum Arthropoda: Crustacea, Amphipoda: Gammaridea. Light's Manual: Intertidal Invertebrates of the Central California Coast. R. I. Smith and J. T. Carlton, University of California Press. (1981). Stomatopods. FAO species identification sheets for fishery purposes. Eastern Central Atlantic; fishing areas 34,47 (in part).Canada Funds-in Trust. Ottawa, Department of Fisheries and Oceans Canada, by arrangement with the Food and Agriculture Organization of the United Nations, vols. 1-7. W. Fischer, G. Bianchi and W. B. Scott. (1984). Taxonomic guide to the polychaetes of the northern Gulf of Mexico. Volume II. Final report to the Minerals Management Service. J. M. Uebelacker and P. G. Johnson. Mobile, AL, Barry A. Vittor & Associates, Inc. (1984). Taxonomic guide to the polychaetes of the northern Gulf of Mexico. Volume III. Final report to the Minerals Management Service. J. M. Uebelacker and P. G. Johnson. Mobile, AL, Barry A. Vittor & Associates, Inc. (1984). Taxonomic guide to the polychaetes of the northern Gulf of Mexico. -
Phylogeny of the Taxon Paralaophontodes Lang
Zoosyst. Evol. 93 (2) 2017, 211–241 | DOI 10.3897/zse.93.11314 museum für naturkunde Phylogeny of the taxon Paralaophontodes Lang (Copepoda, Harpacticoida, Laophontodinae), including species descriptions, chorological remarks, and a key to species Kai Horst George1 1 Senckenberg am Meer, Abt. Deutsches Zentrum für Marine Biodiversitätsforschung DZMB, Südstrand 44, D-26382 Wilhelmshaven, Germany http://zoobank.org/32051770-28D6-4A10-8321-BF82758AA0D6 Corresponding author: Kai Horst George ([email protected]) Abstract Received 24 November 2016 A detailed phylogenetic analysis of the taxon Paralaophontodes Lang (Copepoda, Har- Accepted 8 March 2017 pacticoida, Laophontodinae Lang) based on morphological characters is presented. The Published 22 March 2017 monophylum Paralaophontodes is supported by 16 unambiguous autapomorphies such as the presence of characteristic dorsal processes on cephalothorax and body somites, Academic editor: a 5-segmented male antennule, the loss of the syncoxal seta on the maxilliped, and the Michael Ohl endopodal strengthening of the first swimming leg. The corresponding extensive phy- logenetic evaluation includes the description of Paralaophontodes anjae sp. n. from a Key Words beach on Chiloé Island (Chile), the re-description of Laophontodes armatus Lang, and the re-establishment of Paralaophontodes robustus (Bŏzić), the displacement of Laop- Crustacea hontodes armatus, L. hedgpethi Lang and L. psammophilus Soyer to Paralaophontodes, Meiofauna a discussion on relationships within that taxon, remarks on its geographical distribution, Ancorabolidae and a key to the species. systematics taxonomy geographical distribution Introduction Laophontodinae, relocating L. echinata into the new ge- nus as Paralaophontodes echinatus (Willey, 1930) while Lang (1936) erroneously synonymized Laophonte ech- retaining L. armatus within Laophontodes T. Scott, 1894. -
DM Genise Estremadura OGS Approved Project.Pdf
QATAR UNIVERSITY COLLEGE OF ARTS AND SCIENCES MEIOBENTHIC ASSEMBLAGES IN SOME INTERTIDAL AREAS AROUND QATAR, ARABIAN GULF BY DM G. ESTREMADURA A Project Submitted to the Faculty of the College of Arts and Sciences in Partial Fulfillment of the Requirements for the Degree of Masters of Science in Environmental Sciences January 2021 © 2021. DM Estremadura. All Rights Reserved. COMMITTEE PAGE The members of the Committee approve the Project of DM Estremadura defended on 07/12/2020. Dr. Jassim Al-Khayat Thesis/Dissertation Supervisor Dr. Abdulrahman Al-Muftah Committee Member Dr. Yousra Soliman Committee Member ii ABSTRACT ESTREMADURA, DM G., Masters : January : 2021, Master of Science in Environmental Sciences Title: Meiobenthic Assemblages in some Intertidal Areas around Qatar, Arabian Gulf Supervisor of Project: Jassim Al-Khayat. Sediment core samples were collected in 10 locations around intertidal areas of Qatar to acquire baseline information on meiobenthic density and composition. Temperature, salinity, and pH of interstitial waters were measured, in situ. Additional core samples were collected for nutrient and granulometry analysis. A total of 74 taxonomic groups belonging to 14 phyla were recorded. Total mean density was 120.89 ind/10cm2, with a range 0.42 to 16.73 ind/10cm2. High densities were recorded in Al Wakra 1 (rocky shore), Simaisma, Al Khor and Al Zubara. Furthermore, Al Zubara showed high species richness, expH’ and evenness index. High nematode/copepod ratios were recorded in Fuwairit and Al Wakra 2 (mangrove area). Meiofaunal densities and composition were associated with sediment characteristics and total organic matter availability in the area. Further investigations should be done on meiofaunal community of Qatar to determine the effect of seasons and other anthropogenic activities on the community. -
Larval Assemblages Over the Abyssal Plain in the Pacific Are Highly Diverse and Spatially Patchy
Larval assemblages over the abyssal plain in the Pacific are highly diverse and spatially patchy Oliver Kersten1,2, Eric W. Vetter1, Michelle J. Jungbluth1,3, Craig R. Smith3 and Erica Goetze3 1 Hawaii Pacific University, Kaneohe, HI, United States of America 2 Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway 3 Department of Oceanography, University of Hawaii at Manoa, Honolulu, HI, United States of America ABSTRACT Abyssal plains are among the most biodiverse yet least explored marine ecosystems on our planet, and they are increasingly threatened by human impacts, including future deep seafloor mining. Recovery of abyssal populations from the impacts of polymetallic nodule mining will be partially determined by the availability and dispersal of pelagic larvae leading to benthic recolonization of disturbed areas of the seafloor. Here we use a tree-of-life (TOL) metabarcoding approach to investigate the species richness, diversity, and spatial variability of the larval assemblage at mesoscales across the abyssal seafloor in two mining-claim areas in the eastern Clarion Clipperton Fracture Zone (CCZ; abyssal Pacific). Our approach revealed a previously unknown taxonomic richness within the meroplankton assemblage, detecting larvae from 12 phyla, 23 Classes, 46 Orders, and 65 Families, including a number of taxa not previously reported at abyssal depths or within the Pacific Ocean. A novel suite of parasitic copepods and worms were sampled, from families that are known to associate with other benthic invertebrates or demersal fishes as hosts. Larval assemblages were patchily distributed at the mesoscale, with little similarity in OTUs detected among deployments even within the same 30 × 30 km study area.