Examining New Phylogenetic Markers to Uncover The
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Dipterists Digest
Dipterists Digest 2019 Vol. 26 No. 1 Cover illustration: Eliozeta pellucens (Fallén, 1820), male (Tachinidae) . PORTUGAL: Póvoa Dão, Silgueiros, Viseu, N 40º 32' 59.81" / W 7º 56' 39.00", 10 June 2011, leg. Jorge Almeida (photo by Chris Raper). The first British record of this species is reported in the article by Ivan Perry (pp. 61-62). Dipterists Digest Vol. 26 No. 1 Second Series 2019 th Published 28 June 2019 Published by ISSN 0953-7260 Dipterists Digest Editor Peter J. Chandler, 606B Berryfield Lane, Melksham, Wilts SN12 6EL (E-mail: [email protected]) Editorial Panel Graham Rotheray Keith Snow Alan Stubbs Derek Whiteley Phil Withers Dipterists Digest is the journal of the Dipterists Forum . It is intended for amateur, semi- professional and professional field dipterists with interests in British and European flies. All notes and papers submitted to Dipterists Digest are refereed. Articles and notes for publication should be sent to the Editor at the above address, and should be submitted with a current postal and/or e-mail address, which the author agrees will be published with their paper. Articles must not have been accepted for publication elsewhere and should be written in clear and concise English. Contributions should be supplied either as E-mail attachments or on CD in Word or compatible formats. The scope of Dipterists Digest is: - the behaviour, ecology and natural history of flies; - new and improved techniques (e.g. collecting, rearing etc.); - the conservation of flies; - reports from the Diptera Recording Schemes, including maps; - records and assessments of rare or scarce species and those new to regions, countries etc.; - local faunal accounts and field meeting results, especially if accompanied by ecological or natural history interpretation; - descriptions of species new to science; - notes on identification and deletions or amendments to standard key works and checklists. -
Characterization of Two Undescribed Mucoralean Species with Specific
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 26 March 2018 doi:10.20944/preprints201803.0204.v1 1 Article 2 Characterization of Two Undescribed Mucoralean 3 Species with Specific Habitats in Korea 4 Seo Hee Lee, Thuong T. T. Nguyen and Hyang Burm Lee* 5 Division of Food Technology, Biotechnology and Agrochemistry, College of Agriculture and Life Sciences, 6 Chonnam National University, Gwangju 61186, Korea; [email protected] (S.H.L.); 7 [email protected] (T.T.T.N.) 8 * Correspondence: [email protected]; Tel.: +82-(0)62-530-2136 9 10 Abstract: The order Mucorales, the largest in number of species within the Mucoromycotina, 11 comprises typically fast-growing saprotrophic fungi. During a study of the fungal diversity of 12 undiscovered taxa in Korea, two mucoralean strains, CNUFC-GWD3-9 and CNUFC-EGF1-4, were 13 isolated from specific habitats including freshwater and fecal samples, respectively, in Korea. The 14 strains were analyzed both for morphology and phylogeny based on the internal transcribed 15 spacer (ITS) and large subunit (LSU) of 28S ribosomal DNA regions. On the basis of their 16 morphological characteristics and sequence analyses, isolates CNUFC-GWD3-9 and CNUFC- 17 EGF1-4 were confirmed to be Gilbertella persicaria and Pilobolus crystallinus, respectively.To the 18 best of our knowledge, there are no published literature records of these two genera in Korea. 19 Keywords: Gilbertella persicaria; Pilobolus crystallinus; mucoralean fungi; phylogeny; morphology; 20 undiscovered taxa 21 22 1. Introduction 23 Previously, taxa of the former phylum Zygomycota were distributed among the phylum 24 Glomeromycota and four subphyla incertae sedis, including Mucoromycotina, Kickxellomycotina, 25 Zoopagomycotina, and Entomophthoromycotina [1]. -
Records and Descriptions of North American Crane-Flies (Diptera)
Records and Descriptions of North American Crane-Flies (Diptera). Part III. Tipuloidea of the Upper Gunnison Valley, Colorado Charles P. Alexander American Midland Naturalist, Vol. 29, No. 1. (Jan., 1943), pp. 147-179. Stable URL: http://links.jstor.org/sici?sici=0003-0031%28194301%2929%3A1%3C147%3ARADONA%3E2.0.CO%3B2-V American Midland Naturalist is currently published by The University of Notre Dame. Your use of the JSTOR archive indicates your acceptance of JSTOR's Terms and Conditions of Use, available at http://www.jstor.org/about/terms.html. JSTOR's Terms and Conditions of Use provides, in part, that unless you have obtained prior permission, you may not download an entire issue of a journal or multiple copies of articles, and you may use content in the JSTOR archive only for your personal, non-commercial use. Please contact the publisher regarding any further use of this work. Publisher contact information may be obtained at http://www.jstor.org/journals/notredame.html. Each copy of any part of a JSTOR transmission must contain the same copyright notice that appears on the screen or printed page of such transmission. The JSTOR Archive is a trusted digital repository providing for long-term preservation and access to leading academic journals and scholarly literature from around the world. The Archive is supported by libraries, scholarly societies, publishers, and foundations. It is an initiative of JSTOR, a not-for-profit organization with a mission to help the scholarly community take advantage of advances in technology. For more information regarding JSTOR, please contact [email protected]. -
Diversification of Fungal Chitinases and Their Functional Differentiation in 2 Histoplasma Capsulatum 3
bioRxiv preprint doi: https://doi.org/10.1101/2020.06.09.137125; this version posted June 16, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. 1 Diversification of fungal chitinases and their functional differentiation in 2 Histoplasma capsulatum 3 4 Kristie D. Goughenour1*, Janice Whalin1, 5 Jason C. Slot2, Chad A. Rappleye1# 6 7 1 Department of Microbiology, Ohio State University 8 2 Department of Plant Pathology, Ohio State University 9 10 11 #corresponding author: 12 [email protected] 13 614-247-2718 14 15 *current affiliation: 16 Division of Pulmonary and Critical Care Medicine 17 University of Michigan 18 VA Ann Arbor Healthcare System, Research Service 19 Ann Arbor, Michigan, USA 20 21 22 running title: Fungal chitinases 23 24 keywords: chitinase, GH18, fungi, Histoplasma 25 bioRxiv preprint doi: https://doi.org/10.1101/2020.06.09.137125; this version posted June 16, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. 26 ABSTRACT 27 Chitinases enzymatically hydrolyze chitin, a highly abundant biomolecule with many potential 28 industrial and medical uses in addition to their natural biological roles. Fungi are a rich source of 29 chitinases, however the phylogenetic and functional diversity of fungal chitinases are not well 30 understood. -
Fungal Evolution: Major Ecological Adaptations and Evolutionary Transitions
Biol. Rev. (2019), pp. 000–000. 1 doi: 10.1111/brv.12510 Fungal evolution: major ecological adaptations and evolutionary transitions Miguel A. Naranjo-Ortiz1 and Toni Gabaldon´ 1,2,3∗ 1Department of Genomics and Bioinformatics, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain 2 Department of Experimental and Health Sciences, Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain 3ICREA, Pg. Lluís Companys 23, 08010 Barcelona, Spain ABSTRACT Fungi are a highly diverse group of heterotrophic eukaryotes characterized by the absence of phagotrophy and the presence of a chitinous cell wall. While unicellular fungi are far from rare, part of the evolutionary success of the group resides in their ability to grow indefinitely as a cylindrical multinucleated cell (hypha). Armed with these morphological traits and with an extremely high metabolical diversity, fungi have conquered numerous ecological niches and have shaped a whole world of interactions with other living organisms. Herein we survey the main evolutionary and ecological processes that have guided fungal diversity. We will first review the ecology and evolution of the zoosporic lineages and the process of terrestrialization, as one of the major evolutionary transitions in this kingdom. Several plausible scenarios have been proposed for fungal terrestralization and we here propose a new scenario, which considers icy environments as a transitory niche between water and emerged land. We then focus on exploring the main ecological relationships of Fungi with other organisms (other fungi, protozoans, animals and plants), as well as the origin of adaptations to certain specialized ecological niches within the group (lichens, black fungi and yeasts). -
<I>Mucorales</I>
Persoonia 30, 2013: 57–76 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158513X666259 The family structure of the Mucorales: a synoptic revision based on comprehensive multigene-genealogies K. Hoffmann1,2, J. Pawłowska3, G. Walther1,2,4, M. Wrzosek3, G.S. de Hoog4, G.L. Benny5*, P.M. Kirk6*, K. Voigt1,2* Key words Abstract The Mucorales (Mucoromycotina) are one of the most ancient groups of fungi comprising ubiquitous, mostly saprotrophic organisms. The first comprehensive molecular studies 11 yr ago revealed the traditional Mucorales classification scheme, mainly based on morphology, as highly artificial. Since then only single clades have been families investigated in detail but a robust classification of the higher levels based on DNA data has not been published phylogeny yet. Therefore we provide a classification based on a phylogenetic analysis of four molecular markers including the large and the small subunit of the ribosomal DNA, the partial actin gene and the partial gene for the translation elongation factor 1-alpha. The dataset comprises 201 isolates in 103 species and represents about one half of the currently accepted species in this order. Previous family concepts are reviewed and the family structure inferred from the multilocus phylogeny is introduced and discussed. Main differences between the current classification and preceding concepts affects the existing families Lichtheimiaceae and Cunninghamellaceae, as well as the genera Backusella and Lentamyces which recently obtained the status of families along with the Rhizopodaceae comprising Rhizopus, Sporodiniella and Syzygites. Compensatory base change analyses in the Lichtheimiaceae confirmed the lower level classification of Lichtheimia and Rhizomucor while genera such as Circinella or Syncephalastrum completely lacked compensatory base changes. -
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2 State of the World’s Fungi State of the World’s Fungi 2018 2. Fungal tree of life Ester Gayaa , Pepijn W. Kooija , Bryn T. M. Dentingerb, Igor V. Grigorievc, László G. Nagyd, Jason Stajiche, Timothy Cokera, Ilia J. Leitcha a Royal Botanic Gardens, Kew, UK; b Natural History Museum of Utah & School of Biological Sciences, University of Utah, USA; c U.S. Department of Energy Joint Genome Institute, USA; d Biological Research Centre, Hungarian Academy of Sciences, Hungary; e University of California-Riverside, USA 12 Describing the world’s fungi Fungal tree of life How are different species of fungi related to each other? What do we know about the major steps in fungal evolution and when they occurred? What are we doing about filling the knowledge gaps in the fungal tree of life? stateoftheworldsfungi.org/2018/fungal-tree-of-life.html Fungal tree of life 13 DNA data are providing new insights into the major steps that have taken place over the last 1 BILLION YEARS of fungal evolution 14 Describing the world’s fungi phyla[5], which we follow in this volume. In addition, these HOW ARE DIFFERENT SPECIES RELATED data are providing new insights into the major steps that have TO EACH OTHER? THIS SIMPLE YET taken place over the last 1 billion years of fungal evolution[5–7] (see Figure 1). CRITICALLY IMPORTANT QUESTION, 1. The earliest fungi. The earliest fungi are thought to have WHICH IS ROUTINELY ASKED ABOUT evolved around 1 billion years ago and to have been simple, single-celled organisms living in water and reproducing using SPECIES IN ALL KINGDOMS OF LIFE, motile asexual spores (zoospores) propelled by a posterior IS ONE OF THE MOST DIFFICULT TO whip-like structure called the flagellum[8,9]. -
Trichomycetes from Lentic and Lotic Aquatic Habitats in Ontario, Canada
1449 Trichomycetes from lentic and lotic aquatic habitats in Ontario, Canada D.B. Strongman and Merlin M. White Abstract: Fungi and protists make up an ecological group, trichomycetes, that inhabit the guts of invertebrates, mostly aquatic insects. Trichomycetes are reported herein from arthropods collected in lotic habitats (fast flowing streams) and lentic environments (ponds, ditches, seeps, and lakes) from 11 sites in Algonquin Park and 6 other sites in Ontario, Can- ada. Thirty-two trichomycete species were recovered, including 7 new species: Legeriomyces algonquinensis, Legeriosi- milis leptocerci, Legeriosimilis whitneyi, and Paramoebidium umbonatum are described from mayfly nymphs (Ephemeroptera); Pennella digitata and Glotzia incilis from black fly and midge larvae (Diptera), respectively; and Arun- dinula opeongoensis from a crayfish (Crustacea). Legeriomyces rarus Lichtw. & M.C. Williams and Stachylina penetralis Lichtw. are new North American records, and seven species are documented for the first time in Canada. More common and widely distributed trichomycete species such as Harpella melusinae Le´ger & Duboscq and Smittium culicis Manier, were also recovered. Most previous studies on trichomycetes have been done primarily in lotic environments but clearly lentic systems (e.g., ponds and lakes) harbour diverse arthropod communities and further exploration of these habitats will continue to increase our knowledge of trichomycete diversity. Key words: Amoebidiales, Eccrinales, Harpellales, insect fungal endobionts, symbiotic protista. Re´sume´ : Les champignons et les protistes comportent un groupe e´cologique, les trichomyce`tes, qui habitent les intestins de la plupart des insectes aquatiques. Les auteurs rapportent des ttrichomyce`tes provenant d’arthropodes vivants dans des habitats lotiques (cours d’eau rapides) et des environnements lentiques (e´tangs, fosse´s, suintement et lacs) re´colte´s sur 11 sites dans le parc Algonquin et six autres sites en Ontario, au Canada. -
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UC Riverside UC Riverside Previously Published Works Title The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies. Permalink https://escholarship.org/uc/item/4485m01m Journal Microbiology spectrum, 5(5) ISSN 2165-0497 Authors Spatafora, Joseph W Aime, M Catherine Grigoriev, Igor V et al. Publication Date 2017-09-01 DOI 10.1128/microbiolspec.funk-0053-2016 License https://creativecommons.org/licenses/by-nc-nd/4.0/ 4.0 Peer reviewed eScholarship.org Powered by the California Digital Library University of California The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies JOSEPH W. SPATAFORA,1 M. CATHERINE AIME,2 IGOR V. GRIGORIEV,3 FRANCIS MARTIN,4 JASON E. STAJICH,5 and MEREDITH BLACKWELL6 1Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331; 2Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN 47907; 3U.S. Department of Energy Joint Genome Institute, Walnut Creek, CA 94598; 4Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 Interactions Arbres/Microorganismes, Laboratoire d’Excellence Recherches Avancés sur la Biologie de l’Arbre et les Ecosystèmes Forestiers (ARBRE), Centre INRA-Lorraine, 54280 Champenoux, France; 5Department of Plant Pathology and Microbiology and Institute for Integrative Genome Biology, University of California–Riverside, Riverside, CA 92521; 6Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803 and Department of Biological Sciences, University of South Carolina, Columbia, SC 29208 ABSTRACT The kingdom Fungi is one of the more diverse INTRODUCTION clades of eukaryotes in terrestrial ecosystems, where they In 1996 the genome of Saccharomyces cerevisiae was provide numerous ecological services ranging from published and marked the beginning of a new era in decomposition of organic matter and nutrient cycling to beneficial and antagonistic associations with plants and fungal biology (1). -
A Higher-Level Phylogenetic Classification of the Fungi
mycological research 111 (2007) 509–547 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycres A higher-level phylogenetic classification of the Fungi David S. HIBBETTa,*, Manfred BINDERa, Joseph F. BISCHOFFb, Meredith BLACKWELLc, Paul F. CANNONd, Ove E. ERIKSSONe, Sabine HUHNDORFf, Timothy JAMESg, Paul M. KIRKd, Robert LU¨ CKINGf, H. THORSTEN LUMBSCHf, Franc¸ois LUTZONIg, P. Brandon MATHENYa, David J. MCLAUGHLINh, Martha J. POWELLi, Scott REDHEAD j, Conrad L. SCHOCHk, Joseph W. SPATAFORAk, Joost A. STALPERSl, Rytas VILGALYSg, M. Catherine AIMEm, Andre´ APTROOTn, Robert BAUERo, Dominik BEGEROWp, Gerald L. BENNYq, Lisa A. CASTLEBURYm, Pedro W. CROUSl, Yu-Cheng DAIr, Walter GAMSl, David M. GEISERs, Gareth W. GRIFFITHt,Ce´cile GUEIDANg, David L. HAWKSWORTHu, Geir HESTMARKv, Kentaro HOSAKAw, Richard A. HUMBERx, Kevin D. HYDEy, Joseph E. IRONSIDEt, Urmas KO˜ LJALGz, Cletus P. KURTZMANaa, Karl-Henrik LARSSONab, Robert LICHTWARDTac, Joyce LONGCOREad, Jolanta MIA˛ DLIKOWSKAg, Andrew MILLERae, Jean-Marc MONCALVOaf, Sharon MOZLEY-STANDRIDGEag, Franz OBERWINKLERo, Erast PARMASTOah, Vale´rie REEBg, Jack D. ROGERSai, Claude ROUXaj, Leif RYVARDENak, Jose´ Paulo SAMPAIOal, Arthur SCHU¨ ßLERam, Junta SUGIYAMAan, R. Greg THORNao, Leif TIBELLap, Wendy A. UNTEREINERaq, Christopher WALKERar, Zheng WANGa, Alex WEIRas, Michael WEISSo, Merlin M. WHITEat, Katarina WINKAe, Yi-Jian YAOau, Ning ZHANGav aBiology Department, Clark University, Worcester, MA 01610, USA bNational Library of Medicine, National Center for Biotechnology Information, -
February 15 - Deadline: Inoculum 5 L(2) Prior to the 111 Latin American Mycological Congress in Caracas, March 15 - Deadlines: MSA Research Venezuela
Newsletter of the Mycological Society of America -- In This Issue -- Caracas Asco Workshop .........................1-3 Thanks from Ian Ross .............................3-4 MSA Official Business Call for Papers ........................................ 4 From the President ...............................5-6 Committee Reports .............................. 6-7 2000 Award Announcements ............. 8- 1 1 MSA MEETING 2000 ................... 16- 17 Sustaining Members ............................. 29 Forms Change of Address .............................20 Gift Membership ...............................24 Endowment & Contributions ............30 Front row (1 to r) - Rick Weinstein, Rosario Medel, Karen Hatisen, Kris Peterson. Society Membership ..........................3 1 Marcela Solo; -Matias Cafaro, Sandy Salas, Paolo Porras, Josi Hernrindez, Mycology On-Line Directory ..................20 Mary Palm, Fernando Fernandez, Don Pfistet; Dick Hanlin. Emory Simmons Mycological News .................. 12-15, 18-20 Mycologist's Bookshelf ......................2 1-24 Ascos in Venezuela: Workshop memories Review: "lllustrated Genera of by Mary Palm Impeifect Fungi" Calendar of Events .............................. 27-28 Former MSA president DI:Palm (of the Beltsville USDA-APHIS Mycological Classifieds ..................... 25-27 lab) shares her and fellow August Asco workshoppers 'happy Positions, Goods & Services, Publica- memories of Enezuela before the devastatingjloods and landslides tions, Workshops, of December: - Important Dates - Late -
ZYGOMYCOTA CITADOS PARA CHILE (Zygomycota Cited in Chile)
Boletín Micológico Vol. 18 : 67 - 74 2003 ZYGOMYCOTA CITADOS PARA CHILE (Zygomycota cited in Chile) Oscar Martínez V. & Eduardo Valenzuela F. Instituto de Microbiología, Facultad de Ciencias, Universidad Austral de Chile. Casilla 167, Valdivia, Chile. Palabras claves: Taxonomía. Zygomycota, Glomeromycota, Chile. Key word: Taxonomy, Zygomycota, Glomeromycota, Chile. RESUMEN ABSTRACT Se hizo un estudio bibliográfico sobre taxa A bibliographical study about taxa belonging to pertenecientes a las Divisiones Zygomycota y Glome- the Zygomycota and Glomeromycota Division was carried romycota, elaborandose un listado actualizado de los out. Based on the gathered information, an updated list of hongos pertenecientes a estos taxa citados para Chile, fungi included in the above taxonomic groups and cited in principalmente en revistas chilenas, hasta el año 2002. Los Chile mainly in chilean issues until 2002 was prepared. taxa fueron agrupadas de acuerdo a la taxonomía moder- Taxa were grouped according to the modern taxonomy na citada por Kirk et al.,(2001). Para Chile actualmente referred to by Kirk et al. (2001). As a result, there are in se citarían 3 taxa pertenecientes a los Glomeromycota, Chile 3 taxa belonging to the Glomeromycota, 87 belong- 87 a los Zygomycota, de los cuales 81 pertenecen a los ing to the Zygomycota, 81 to the Zygomycetes, and 6 to Zygomycetes y 6 a los Trycomycetes. the Trycomycetes . INTRODUCCION El objetivo de este trabajo es proporcionar una lista actualizada de los taxa pertenecientes a las Divisiones De acuerdo a Kirk et al. (2001), los hongos Zygo y Glomeromycota citadas (en revistas preferen-te- per-tenecientes a la División Zygomycota han sido mente nacionales) para Chile hasta el año 2002.