' Its Host Laurencia Nipponica (Ceramiales, Rhodophyceae
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J. Phycol. 53, 32–43 (2017) © 2016 Phycological Society of America DOI: 10.1111/Jpy.12472
J. Phycol. 53, 32–43 (2017) © 2016 Phycological Society of America DOI: 10.1111/jpy.12472 ANALYSIS OF THE COMPLETE PLASTOMES OF THREE SPECIES OF MEMBRANOPTERA (CERAMIALES, RHODOPHYTA) FROM PACIFIC NORTH AMERICA1 Jeffery R. Hughey2 Division of Mathematics, Science, and Engineering, Hartnell College, 411 Central Ave., Salinas, California 93901, USA Max H. Hommersand Department of Biology, University of North Carolina at Chapel Hill, CB# 3280, Coker Hall, Chapel Hill, North Carolina 27599- 3280, USA Paul W. Gabrielson Herbarium and Department of Biology, University of North Carolina at Chapel Hill, CB# 3280, Coker Hall, Chapel Hill, North Carolina 27599-3280, USA Kathy Ann Miller Herbarium, University of California at Berkeley, 1001 Valley Life Sciences Building 2465, Berkeley, California 94720-2465, USA and Timothy Fuller Division of Mathematics, Science, and Engineering, Hartnell College, 411 Central Ave., Salinas, California 93901, USA Next generation sequence data were generated occurring south of Alaska: M. platyphylla, M. tenuis, and used to assemble the complete plastomes of the and M. weeksiae. holotype of Membranoptera weeksiae, the neotype Key index words: Ceramiales; Delesseriaceae; holo- (designated here) of M. tenuis, and a specimen type; Membranoptera; Northeast Pacific; phylogenetic examined by Kylin in making the new combination systematics; plastid genome; plastome; rbcL M. platyphylla. The three plastomes were similar in gene content and length and showed high gene synteny to Calliarthron, Grateloupia, Sporolithon, and Vertebrata. Sequence variation in the plastome Freshwater and Rueness (1994) were the first to coding regions were 0.89% between M. weeksiae and use gene sequences to address species-level taxo- M. tenuis, 5.14% between M. -
Have Elevated Substitution Rates and 12 Extreme Gene Loss in the Plastid Genome 1 13 14
1 2 DR. MAREN PREUSS (Orcid ID : 0000-0002-8147-5643) 3 DR. HEROEN VERBRUGGEN (Orcid ID : 0000-0002-6305-4749) 4 DR. GIUSEPPE C. ZUCCARELLO (Orcid ID : 0000-0003-0028-7227) 5 6 7 Article type : Regular Article 8 9 10 The organelle genomes in the photosynthetic red algal parasite Pterocladiophila 11 hemisphaerica (Florideophyceae, Rhodophyta) have elevated substitution rates and 12 extreme gene loss in the plastid genome 1 13 14 15 Maren Preuss2 16 School of Biological Sciences, Victoria University of Wellington, PO Box 600, Wellington, 17 6140, New Zealand 18 19 Heroen Verbruggen 20 School of BioSciences, University of Melbourne, Parkville, VIC 3010, Australia 21 and 22 Giuseppe C. Zuccarello 23 School of Biological Sciences, Victoria University of Wellington, PO Box 600, Wellington, 24 6140, New Zealand 25 26 27 Author Manuscript 28 Running title: Pterocladiophila organelle genomes 29 This is the author manuscript accepted for publication and has undergone full peer review but has not been through the copyediting, typesetting, pagination and proofreading process, which may lead to differences between this version and the Version of Record. Please cite this article as doi: 10.1111/JPY.12996-20-002 This article is protected by copyright. All rights reserved 30 1 Received Accepted ___________ 31 2 Corresponding author: [email protected] 32 33 34 Editorial Responsibility: M. Coleman (Associate Editor) 35 36 37 ABSTRACT 38 Comparative organelle genome studies of parasites can highlight genetic changes that occur 39 during the transition from a free-living to a parasitic state. Our study focuses on a poorly 40 studied group of red algal parasites, which are often closely related to their red algal hosts and 41 from which they presumably evolved. -
758 the Ultrastructure of an Alloparasitic Red Alga Choreocolax
PHYCOLOGIA 12(3/4) 1973 The ultrastructure of an alloparasitic red alga Choreocolax polysiphoniae I PAUL KUGRENS Department of Botany and Plant Pathology, Colorado State University, Fort Collins, Colorado 80521, U.S.A. AND JOHN A. WEST Department of Botany, University of California, Berkeley, California 94720, U.S.A. Accepted June 18, 1973 An alloparasite, Choreocolax polysipiloniae, apparently represents one of the most evolved parasitic red algae. Chlo�oplasts are highly redu�ed and consist of dOl!ble membrane limited organelles lacking any inter nal thylako!� developmen!. The unInucleate cells have thick walls, an absence of starch in cortical cells and larg� quantIties of starch In meduII ary cells. Host-para�ite connections are made by typical red algal pit con . nectIOns. G.eneral effects of t�e InfectIOn on the host .Include cell hypertrophy, decrease in floridean starch granules, dispersed cytoplasmiC matrIces, and contorsJOn of chloroplasts. Phycologia, 12(3/4): 175-186, 1973 Introduction of the host, Cryptopleura. Her decision was The paraSItIc red algae constitute a unique based on the similarity in reproductive struc 1?irou of organisms about which surprisingly tures between the host and parasite, and she � suggested bacteria as causal agents for such lIttle IS known, although their distinctive nature . has been recognized since the late nineteenth proliferatIons. Chemin (1937) also indicated century. There are approximately 40 genera, that bacteria might be causal agents since bac unknown numbers of species, and all are ex teria were isolated from surface-sterilized thalli clusively florideophycean, belonging to all of Callocolax neglectus. Observations on Lobo orders except the Nemaliales. -
Organellar Genome Evolution in Red Algal Parasites: Differences in Adelpho- and Alloparasites
University of Rhode Island DigitalCommons@URI Open Access Dissertations 2017 Organellar Genome Evolution in Red Algal Parasites: Differences in Adelpho- and Alloparasites Eric Salomaki University of Rhode Island, [email protected] Follow this and additional works at: https://digitalcommons.uri.edu/oa_diss Recommended Citation Salomaki, Eric, "Organellar Genome Evolution in Red Algal Parasites: Differences in Adelpho- and Alloparasites" (2017). Open Access Dissertations. Paper 614. https://digitalcommons.uri.edu/oa_diss/614 This Dissertation is brought to you for free and open access by DigitalCommons@URI. It has been accepted for inclusion in Open Access Dissertations by an authorized administrator of DigitalCommons@URI. For more information, please contact [email protected]. ORGANELLAR GENOME EVOLUTION IN RED ALGAL PARASITES: DIFFERENCES IN ADELPHO- AND ALLOPARASITES BY ERIC SALOMAKI A DISSERTATION SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY IN BIOLOGICAL SCIENCES UNIVERSITY OF RHODE ISLAND 2017 DOCTOR OF PHILOSOPHY DISSERTATION OF ERIC SALOMAKI APPROVED: Dissertation Committee: Major Professor Christopher E. Lane Jason Kolbe Tatiana Rynearson Nasser H. Zawia DEAN OF THE GRADUATE SCHOOL UNIVERSITY OF RHODE ISLAND 2017 ABSTRACT Parasitism is a common life strategy throughout the eukaryotic tree of life. Many devastating human pathogens, including the causative agents of malaria and toxoplasmosis, have evolved from a photosynthetic ancestor. However, how an organism transitions from a photosynthetic to a parasitic life history strategy remains mostly unknown. Parasites have independently evolved dozens of times throughout the Florideophyceae (Rhodophyta), and often infect close relatives. This framework enables direct comparisons between autotrophs and parasites to investigate the early stages of parasite evolution. -
2014, Newport, RI
53rd Annual Northeast Algal Symposium Newport, RI 25-27 April 2014 2014 Northeast Algal Symposium Sponsors The 2014 NEAS logos were designed by Kathryn Hurley. Hurley graduated from Roger Williams University in 2012 with a B.A. in Marine Biology and a minor in Visual Arts, focusing on scientific illustration. Directly after graduation, she became an Aquarist and Trainer at the Maritime Aquarium in Norwalk, Connecticut. She has recently moved back to Plymouth Massachusetts where she is an Assistant Biologist for Smithers Viscient. http://kathrynhurleyartwork.blogspot.com. 2 Table of Contents Welcome from Conveners …………………………………………………………..…......... 4 2013-2014 Executive Committee Officers…………………………..…..……………… 5 2013-2014 NEAS election ballot…………………………………………………………..…. 7 2013-2014 Candidates for Nominations Committee Chair……………………… 8 General program …………………………………………………………..………………………. 9 Oral abstracts (in order of presentation, Saturday) …….…………………………. 15 Mini-symposium: Algae as Model Systems……………………………………………… 28 Oral abstracts (in order of presentation, Sunday) …….……………………………. 32 Poster abstracts (numbered presentation boards) ……..……….………………… 35 List of symposium participants……………………………………………………………….. 48 Maps & Directions to Meeting Venues…………………………………………………… 51 Acknowledgements The co-conveners acknowledge the generous support of our sponsors for this event, Salve Regina University, Roger Williams University (Feinstein School of Arts & Sciences, and the Department of Biology, Marine Biology & Environmental Science), and FMC (Erick Ask). -
Investigating Diversity, Evolution, Development and Physiology of Red Algal Parasites from New Zealand
Investigating diversity, evolution, development and physiology of red algal parasites from New Zealand BY MAREN PREUSS A thesis submitted to Victoria University of Wellington in fulfilment of the requirements for the degree of Doctor of Philosophy Victoria University of Wellington Te Whare Wānanga o te Ūpoko o te Ika a Māui (2018) ii This thesis was conducted under the supervision of Associate Professor Joe Zuccarello (Primary Supervisor) Victoria University of Wellington, Wellington, New Zealand and Professor Wendy Nelson (Secondary Supervisor) National Institute of Atmospheric Research, Wellington, New Zealand and University of Auckland, Auckland, New Zealand iii iv Abstract Red algal parasites have evolved independently over a 100 times and grow only on other red algal hosts. Most parasites are closely related to their host based on the similarity of their reproductive structures. Secondary pit connections between red algal parasites and their hosts are used to transfer parasite organelles and nuclei into host cells. Morphological and physiological changes in infected host cells have been observed in some species. Parasite mitochondrial genomes are similar in size and gene content to free-living red algae whereas parasite plastids are highly reduced. Overall, red algal parasites are poorly studied and thus the aim of this study was to increase the general knowledge of parasitic taxa with respect to their diversity, evolutionary origin, development, physiology, and organelle evolution. Investigation of the primary literature showed that most species descriptions of red algal parasites were poor and did not meet the criteria for defining a parasitic relationship. This literature study also revealed a lack of knowledge of many key parasitic processes including early parasite development, host cell “control”, and parasite origin. -
Analysis of Chloroplast Genomes and a Supermatrix Inform Reclassification of the Rhodomelaceae (Rhodophyta)
Journal of Phycology ANALYSIS OF CHLOROPLAST GENOMES AND A SUPERMATRIX INFORM RECLASSIFICATION OF THE RHODOMELACEAE (RHODOPHYTA) Journal: Journal of Phycology Manuscript ID JPY-17-049-ART.R1 Manuscript Type: Regular Article Date Submitted by the Author: n/a Complete List of Authors: Díaz Tapia, Pilar; University of A Coruña, Coastal Biology Research Group Maggs, Christine; Bournemouth University, Faculty of Science and Technology West, John; University of Melbourne, School of BioSciences Verbruggen, Heroen; University of Melbourne, School of BioSciences chloroplast genome, classification, phylogenomics, red algae, Keywords: Rhodomelaceae, Rhodophyta, tribes Page 1 of 129 Journal of Phycology 1 ANALYSIS OF CHLOROPLAST GENOMES AND A SUPERMATRIX INFORM 1 2 RECLASSIFICATION OF THE RHODOMELACEAE (RHODOPHYTA) Formatted: English (U.K.) 3 1 4 Pilar Díaz-Tapia2 5 Coastal Biology Research Group, Faculty of Sciences and Centre for Advanced 6 Scientific Research (CICA), University of A Coruña, 15071, A Coruña. Spain 7 School of BioSciences, University of Melbourne, Melbourne, Victoria 3010, Australia 8 Faculty of Science and Technology, Bournemouth University, Talbot Campus, Poole, 9 Dorset BH12 5BB, UK 10 11 Christine A. Maggs 12 Faculty of Science and Technology, Bournemouth University, Talbot Campus, Poole, 13 Dorset BH12 5BB, UK 14 15 John A. West 16 School of BioSciences, University of Melbourne, Melbourne, Victoria 3010, Australia 17 18 Heroen Verbruggen 19 School of BioSciences, University of Melbourne, Melbourne, Victoria 3010, Australia 20 21 2Author for correspondence: e-mail [email protected] 1 Received ; accepted 1 Journal of Phycology Page 2 of 129 22 Abstract 23 With over a thousand species, the Rhodomelaceae is the most species-rich family of red 24 algae. -
Rhodophyta) Reveals A
bioRxiv preprint doi: https://doi.org/10.1101/182709; this version posted August 30, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Molecular Analysis of Parasites in the Choreocolacaceae (Rhodophyta) Reveals a 2 Reduced Harveyella mirabilis Plastid Genome and Supports the Transfer of Genera 3 to the Rhodomelaceae (Rhodophyta) 4 5 6 Eric D. Salomaki2 7 Department of Biological Sciences, University of Rhode Island, Kingston, RI, USA. 8 9 Gary W. Saunders 10 Centre for Environmental and Molecular Algal Research, Department of Biology, 11 University of New Brunswick, Fredericton, NB, E3B 5A3, Canada. 12 13 Christopher E. Lane 14 Department of Biological Sciences, University of Rhode Island, Kingston, RI, USA. 15 16 17 1Received. 18 2Author for correspondence: email [email protected]. 19 Running Title: Alloparasite plastid from Harveyella mirabilis bioRxiv preprint doi: https://doi.org/10.1101/182709; this version posted August 30, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 20 Abstract: 21 Parasitism is a life strategy that has repeatedly evolved within the 22 Florideophyceae. Until recently, the accepted paradigm of red algal parasite evolution 23 was that parasites arise by first infecting a close relative and, either through host jumping 24 or diversification, adapt to infect more distant relatives. -
Ultrastructure and Development of the Female Reproductive Branches of Polysiphonia Harveyi
W&M ScholarWorks Dissertations, Theses, and Masters Projects Theses, Dissertations, & Master Projects 1981 Ultrastructure and development of the female reproductive branches of Polysiphonia harveyi Sharon Thompson Broadwater College of William & Mary - Arts & Sciences Follow this and additional works at: https://scholarworks.wm.edu/etd Part of the Botany Commons, and the Developmental Biology Commons Recommended Citation Broadwater, Sharon Thompson, "Ultrastructure and development of the female reproductive branches of Polysiphonia harveyi" (1981). Dissertations, Theses, and Masters Projects. Paper 1539625123. https://dx.doi.org/doi:10.21220/s2-j445-yw68 This Thesis is brought to you for free and open access by the Theses, Dissertations, & Master Projects at W&M ScholarWorks. It has been accepted for inclusion in Dissertations, Theses, and Masters Projects by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. ULTRASTRUCTURE AND DEVELOPMENT OF THE FEMALE REPRODUCTIVE BRANCHES OF POLYSIPHONIA HARVEYI A Thesis Presented To The Faculty of the Department of Biology The College of William and Mary in Virginia In Partial Fulfillment Of the Requirements for the Degree of Master of Arts by Sharon Thompson Broadwater 1981 APPROVAL SHEET This thesis is submitted in partial fulfillment of the requirements for the degree of Master of Arts * Sharon Thompson Broadwater Approved, May 1981 Joseph L. ~cott Stanton F. Hoegerman Ut'-cUU Lawrence L. Wiseman TABLE OF CONTENTS Page ACKNOWLEDGEMENTS.......................................................................... -
Are All Red Algal Parasites Cut from the Same Cloth? Eric D
University of Rhode Island DigitalCommons@URI Biological Sciences Faculty Publications Biological Sciences 2014 Are All Red Algal Parasites Cut from the Same Cloth? Eric D. Salomaki Christopher E. Lane University of Rhode Island, [email protected] Creative Commons License Creative Commons License This work is licensed under a Creative Commons Attribution 3.0 License. Follow this and additional works at: https://digitalcommons.uri.edu/bio_facpubs Citation/Publisher Attribution Salomaki, Eric D.; Lane, Christopher E. (2014). "Are all red algal parasites cut from the same cloth?" Acta Societatis Botanicorum Poloniae. 83(4), 369-375. Available at: http://dx.doi.org/10.5586/asbp.2014.047 This Article is brought to you for free and open access by the Biological Sciences at DigitalCommons@URI. It has been accepted for inclusion in Biological Sciences Faculty Publications by an authorized administrator of DigitalCommons@URI. For more information, please contact [email protected]. Acta Societatis Botanicorum Poloniae INVITED REVIEW Acta Soc Bot Pol 83(4):369–375 DOI: 10.5586/asbp.2014.047 Received: 2014-11-21 Accepted: 2014-12-12 Published electronically: 2014-12-31 Are all red algal parasites cut from the same cloth? Eric D. Salomaki*, Christopher E. Lane Department of Biological Sciences, University of Rhode Island, Kingston, RI 02881, USA Abstract Parasitism is a common life strategy throughout the eukaryotic tree of life. Many devastating human pathogens, including the causative agents of malaria and toxoplasmosis, have evolved from a photosynthetic ancestor. However, how an organ- ism transitions from a photosynthetic to a parasitic life history strategy remains mostly unknown. This is largely because few systems present the opportunity to make meaningful comparisons between a parasite and a close free-living relative. -
(Rhodomelaceae, Rhodophyta) in the British Isles Reveals New Records and Species That Require Taxonomic Revision
cryptogamie Algologie 2020 ● 41 ● 8 DIRECTEUR DE LA PUBLICATION / PUBLICATION DIRECTOR : Bruno DAVID Président du Muséum national d’Histoire naturelle RÉDACTRICE EN CHEF / EDITOR-IN-CHIEF : Line LE GALL Muséum national d’Histoire naturelle ASSISTANTE DE RÉDACTION / ASSISTANT EDITOR : Audrina NEVEU ([email protected]) MISE EN PAGE / PAGE LAYOUT : Audrina NEVEU RÉDACTEURS ASSOCIÉS / ASSOCIATE EDITORS Ecoevolutionary dynamics of algae in a changing world Stacy KRUEGER-HADFIELD Department of Biology, University of Alabama, 1300 University Blvd, Birmingham, AL 35294 (United States) Jana KULICHOVA Department of Botany, Charles University, Prague (Czech Repubwlic) Cecilia TOTTI Dipartimento di Scienze della Vita e dell’Ambiente, Università Politecnica delle Marche, Via Brecce Bianche, 60131 Ancona (Italy) Phylogenetic systematics, species delimitation & genetics of speciation Sylvain FAUGERON UMI3614 Evolutionary Biology and Ecology of Algae, Departamento de Ecología, Facultad de Ciencias Biologicas, Pontificia Universidad Catolica de Chile, Av. Bernardo O’Higgins 340, Santiago (Chile) Marie-Laure GUILLEMIN Instituto de Ciencias Ambientales y Evolutivas, Universidad Austral de Chile, Valdivia (Chile) Diana SARNO Department of Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Napoli (Italy) Comparative evolutionary genomics of algae Nicolas BLOUIN Department of Molecular Biology, University of Wyoming, Dept. 3944, 1000 E University Ave, Laramie, WY 82071 (United States) Heroen VERBRUGGEN School of BioSciences, -
Development of the Red Algal Parasite Vertebrata Aterrimophila Sp. Nov. (Rhodomelaceae, Ceramiales) from New Zealand Maren Preuss a and Giuseppe C
EUROPEAN JOURNAL OF PHYCOLOGY 2019, VOL. 54, NO. 2, 175–183 https://doi.org/10.1080/09670262.2018.1536284 Development of the red algal parasite Vertebrata aterrimophila sp. nov. (Rhodomelaceae, Ceramiales) from New Zealand Maren Preuss a and Giuseppe C. Zuccarello a aSchool of Biological Sciences, Victoria University of Wellington, PO Box 600, Wellington, 6140, New Zealand ABSTRACT Parasitic red algae grow only on other red algae and have over 120 described species. Developmental studies in red algal parasites are few, although they have shown that secondary pit connections formed between parasite and host and proposed that this was an important process in successful parasitism. Furthermore, it was recorded that the transfer of parasite nuclei by these secondary pit connections led to different host cell effects. We used developmental studies to reconstruct early stages and any host cell effects of a parasite on Vertebrata aterrima. A mitochondrial marker (cox1) and morphological observations (light and fluorescence microscopy) were used to describe this new red algal parasite as Vertebrata aterrimo- phila sp. nov. Early developmental stages show that a parasite spore connects via secondary pit connections with a pericentral host cell after cuticle penetration. Developmental observations revealed a unique connection cell that grows into a ‘trunk-like’ structure. Host cell transformation after infection by the parasite included apparent increases in both carbohydrate concentrations and nuclear size, as well as structural changes. Analyses of molecular phylogenies and reproductive structures indicated that the closest relative of V. aterrimophila is its host, V. aterrima. Our study shows a novel developmental parasite stage (‘trunk-like’ cell) and highlights the need for further developmental studies to investigate the range of developmental patterns and host effects in parasitic red algae.