Comparative Transcriptome Analyses of Seven Anurans Reveal Functions
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Downloaded from Brill.Com10/05/2021 09:34:25AM Via Free Access © Koninklijke Brill NV, Leiden, 2017
Amphibia-Reptilia 38 (2017): 483-502 Resurrection of genus Nidirana (Anura: Ranidae) and synonymizing N. caldwelli with N. adenopleura, with description of a new species from China Zhi-Tong Lyu, Zhao-Chi Zeng, Jian Wang, Chao-Yu Lin, Zu-Yao Liu, Ying-Yong Wang∗ Abstract. The taxonomy of Babina sensu lato was controversial in the past decades. In this study, the phylogeny of genus Babina sensu lato was re-constructed based on genetic analysis, morphological comparison and advertisement call analysis. We found that Babina sensu stricto and previous subgenus Nidirana should be two distinct genera in the family Ranidae. N. caldwelli is confirmed to be a synonym of N. adenopleura because of the small genetic divergence and the lack of distinct morphological differences. A new species, Nidirana nankunensis sp. nov. is described based on a series of specimens collected from Mt. Nankun, Guangdong Province, China, which can be distinguished from other known congeners by having a behavior of nest construction, distinctive advertisement calls, significant divergence in the mitochondrial genes, and a combination of morphological characters. Currently, the genus Babina contains two species and the genus Nidirana contains eight species. Keywords: Babina, bioacoustic, mitochondrial DNA, morphology, Nidirana nankunensis sp. nov., phylogeny. Introduction folds (Dubois, 1992). Subsequently, Nidirana was recognized as a separate genus by Chen The ranid genus Babina was established and de- et al. (2005), based on a molecular phyloge- scribed on the basis of Rana holsti Boulenger, netic tree of Southeast Asian ranids that only 1892 (type species) and Rana subaspera Bar- included one Nidirana species – R. (N.) cha- bour, 1908 by Thompson (1912). -
Nansei Islands Biological Diversity Evaluation Project Report 1 Chapter 1
Introduction WWF Japan’s involvement with the Nansei Islands can be traced back to a request in 1982 by Prince Phillip, Duke of Edinburgh. The “World Conservation Strategy”, which was drafted at the time through a collaborative effort by the WWF’s network, the International Union for Conservation of Nature (IUCN), and the United Nations Environment Programme (UNEP), posed the notion that the problems affecting environments were problems that had global implications. Furthermore, the findings presented offered information on precious environments extant throughout the globe and where they were distributed, thereby providing an impetus for people to think about issues relevant to humankind’s harmonious existence with the rest of nature. One of the precious natural environments for Japan given in the “World Conservation Strategy” was the Nansei Islands. The Duke of Edinburgh, who was the President of the WWF at the time (now President Emeritus), naturally sought to promote acts of conservation by those who could see them through most effectively, i.e. pertinent conservation parties in the area, a mandate which naturally fell on the shoulders of WWF Japan with regard to nature conservation activities concerning the Nansei Islands. This marked the beginning of the Nansei Islands initiative of WWF Japan, and ever since, WWF Japan has not only consistently performed globally-relevant environmental studies of particular areas within the Nansei Islands during the 1980’s and 1990’s, but has put pressure on the national and local governments to use the findings of those studies in public policy. Unfortunately, like many other places throughout the world, the deterioration of the natural environments in the Nansei Islands has yet to stop. -
Cathelicidin-OA1, a Novel Antioxidant Peptide Identified from An
www.nature.com/scientificreports OPEN Cathelicidin-OA1, a novel antioxidant peptide identifed from an amphibian, accelerates skin Received: 9 October 2017 Accepted: 2 January 2018 wound healing Published: xx xx xxxx Xiaoqing Cao1, Ying Wang2, Chunyun Wu3, Xiaojie Li4, Zhe Fu3, Meifeng Yang3, Wenxin Bian3, Siyuan Wang2, Yongli Song3, Jing Tang4 & Xinwang Yang3 Cathelicidins play pivotal roles in host defense. The discovery of novel cathelicidins is important research; however, despite the identifcation of many cathelicidins in vertebrates, few have been reported in amphibians. Here we identifed a novel cathelicidin (named cathelicidin-OA1) from the skin of an amphibian species, Odorrana andersonii. Produced by posttranslational processing of a 198-residue prepropeptide, cathelicidin-OA1 presented an amino acid sequence of ‘IGRDPTWSHLAASCLKCIFDDLPKTHN′ and a molecular mass of 3038.5 Da. Functional analysis showed that, unlike other cathelicidins, cathelicidin-OA1 demonstrated no direct microbe-killing, acute toxicity and hemolytic activity, but did exhibit antioxidant activity. Importantly, cathelicidin-OA1 accelerated wound healing against human keratinocytes (HaCaT) and skin fbroblasts (HSF) in both time- and dose-dependent manners. Notably, cathelicidin-OA1 also showed wound-healing promotion in a mouse model with full-thickness skin wounds, accelerating re-epithelialization and granulation tissue formation by enhancing the recruitment of macrophages to the wound site, inducing HaCaT cell proliferation and HSF cell migration. This is the frst cathelicidin identifed from an amphibian that shows potent wound-healing activity. These results will help in the development of new types of wound-healing agents and in our understanding of the biological functions of cathelicidins. Cathelicidins, which belong to a group of cationic peptides with amphipathic properties, play critical roles in host defense1. -
New Records and an Updated Checklist of Amphibians and Snakes From
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Bonn zoological Bulletin - früher Bonner Zoologische Beiträge. Jahr/Year: 2021 Band/Volume: 70 Autor(en)/Author(s): Le Dzung Trung, Luong Anh Mai, Pham Cuong The, Phan Tien Quang, Nguyen Son Lan Hung, Ziegler Thomas, Nguyen Truong Quang Artikel/Article: New records and an updated checklist of amphibians and snakes from Tuyen Quang Province, Vietnam 201-219 Bonn zoological Bulletin 70 (1): 201–219 ISSN 2190–7307 2021 · Le D.T. et al. http://www.zoologicalbulletin.de https://doi.org/10.20363/BZB-2021.70.1.201 Research article urn:lsid:zoobank.org:pub:1DF3ECBF-A4B1-4C05-BC76-1E3C772B4637 New records and an updated checklist of amphibians and snakes from Tuyen Quang Province, Vietnam Dzung Trung Le1, Anh Mai Luong2, Cuong The Pham3, Tien Quang Phan4, Son Lan Hung Nguyen5, Thomas Ziegler6 & Truong Quang Nguyen7, * 1 Ministry of Education and Training, 35 Dai Co Viet Road, Hanoi, Vietnam 2, 5 Hanoi National University of Education, 136 Xuan Thuy Road, Hanoi, Vietnam 2, 3, 7 Institute of Ecology and Biological Resources, Graduate University of Science and Technology, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet Road, Hanoi, Vietnam 6 AG Zoologischer Garten Köln, Riehler Strasse 173, D-50735 Köln, Germany 6 Institut für Zoologie, Universität Köln, Zülpicher Strasse 47b, D-50674 Köln, Germany * Corresponding author: Email: [email protected] 1 urn:lsid:zoobank.org:author:2C2D01BA-E10E-48C5-AE7B-FB8170B2C7D1 2 urn:lsid:zoobank.org:author:8F25F198-A0F3-4F30-BE42-9AF3A44E890A 3 urn:lsid:zoobank.org:author:24C187A9-8D67-4D0E-A171-1885A25B62D7 4 urn:lsid:zoobank.org:author:555DF82E-F461-4EBC-82FA-FFDABE3BFFF2 5 urn:lsid:zoobank.org:author:7163AA50-6253-46B7-9536-DE7F8D81A14C 6 urn:lsid:zoobank.org:author:5716DB92-5FF8-4776-ACC5-BF6FA8C2E1BB 7 urn:lsid:zoobank.org:author:822872A6-1C40-461F-AA0B-6A20EE06ADBA Abstract. -
Phylogenetic Relationship Among Hylidae and Mitochondrial Protein-Coding Gene Expression in Response to Freezing and Ano
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/332083499 The complete mitochondrial genome of Dryophytes versicolor: Phylogenetic relationship among Hylidae and mitochondrial protein-coding gene expression in response to freezing and ano... Article in International Journal of Biological Macromolecules · March 2019 DOI: 10.1016/j.ijbiomac.2019.03.220 CITATIONS READS 5 209 6 authors, including: Jia-Yong Zhang Bryan E Luu Zhejiang Normal University McGill University 88 PUBLICATIONS 696 CITATIONS 29 PUBLICATIONS 193 CITATIONS SEE PROFILE SEE PROFILE Danna Yu Leping Zhang Zhejiang Normal University Westlake University 57 PUBLICATIONS 255 CITATIONS 18 PUBLICATIONS 104 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Hibernation Metabolomics View project New project: 1)The frog mitochondrial genome project: evolution of frog mitochondrial genomes and their gene expression View project All content following this page was uploaded by Jia-Yong Zhang on 08 April 2019. The user has requested enhancement of the downloaded file. International Journal of Biological Macromolecules 132 (2019) 461–469 Contents lists available at ScienceDirect International Journal of Biological Macromolecules journal homepage: http://www.elsevier.com/locate/ijbiomac The complete mitochondrial genome of Dryophytes versicolor: Phylogenetic relationship among Hylidae and mitochondrial protein-coding gene expression in response to freezing and -
Rich Diversity and Potency of Skin Antioxidant Peptides Revealed A
www.nature.com/scientificreports OPEN Rich diversity and potency of skin antioxidant peptides revealed a novel molecular basis for high- Received: 15 July 2015 Accepted: 18 December 2015 altitude adaptation of amphibians Published: 27 January 2016 Xinwang Yang1,3,*, Ying Wang2,*, Yue Zhang1, Wen-Hui Lee1 & Yun Zhang1 Elucidating the mechanisms of high-altitude adaptation is an important research area in modern biology. To date, however, knowledge has been limited to the genetic mechanisms of adaptation to the lower oxygen and temperature levels prevalent at high altitudes, with adaptation to UV radiation largely neglected. Furthermore, few proteomic or peptidomic analyses of these factors have been performed. In this study, the molecular adaptation of high-altitude Odorrana andersonii and cavernicolous O. wuchuanensis to elevated UV radiation was investigated. Compared with O. wuchuanensis, O. andersonii exhibited greater diversity and free radical scavenging potentiality of skin antioxidant peptides to cope with UV radiation. This implied that O. andersonii evolved a much more complicated and powerful skin antioxidant peptide system to survive high-altitude UV levels. Our results provided valuable peptidomic clues for understanding the novel molecular basis for adaptation to high elevation habitats. All organisms adapt to specific environments to ensure survival. Elucidating the molecular basis of adaptation is a fundamental and long-standing goal of modern evolutionary biology1,2. High-elevation (> 2500 m) environ- ments impose severe physiological challenges on organisms, particularly in regards to the reduced oxygen level, low temperature and elevated ultraviolet (UV) radiation3,4. Animals that have survived thousands of years in highlands have evolved adaptive mechanisms during their evolutionary history to cope with these harsh envi- ronmental stresses. -
Odorrana Margaretae)
ORIGINAL Asian Herpetological Research 2020, 11(2): 108–114 ARTICLE DOI: 10.16373/j.cnki.ahr.190055 Ring Clinal Variation in Morphology of the Green Odorous Frog (Odorrana margaretae) Guannan WEN1,2 and Jinzhong FU1, 3* 1 Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, Sichuan, China 2 University of Chinese Academy of Sciences, Beijing 100049, China 3 Department of Integrative Biology, University of Guelph, Ontario N1G 2W1, Canada 1. Introduction Abstract The green odorous frog (Odorrana margaretae) has an interesting ring-shaped divergence The odorous green frog (Odorrana margaretae) displays an pattern around the Sichuan Basin and documenting its interesting ring-shaped divergence pattern around the Sichuan morphological variations is essential in understanding Basin of western China, much like a ring species (Qiao et al. its evolutionary history. Using curvilinear models, 2018). It is a large stream-dweller primarily distributed in the we detected significant geographical clinal variations mountains of western China with a few sporadic distribution in morphological traits, particularly sizes, of female records at the east (Figure 1A; Fei et al., 2009). Using DNA O. margaretae. Males had significantly smaller sizes sequence and microsatellite DNA data, Qiao et al. (2018) than females, and also had smaller variation ranges examined its phylogeographical history. The current ring- than females. One major trend of morphological shaped distribution pattern likely originated from two refugial variations was clinal: populations from the west populations, one at the west and the other at the southeast of tended to have a larger size with wider head and the Sichuan Basin. Both populations expanded around the Basin longer posterior limbs than populations from the east. -
A Biogeographic Synthesis of the Amphibians and Reptiles of Indochina
BAIN & HURLEY: AMPHIBIANS OF INDOCHINA & REPTILES & HURLEY: BAIN Scientific Publications of the American Museum of Natural History American Museum Novitates A BIOGEOGRAPHIC SYNTHESIS OF THE Bulletin of the American Museum of Natural History Anthropological Papers of the American Museum of Natural History AMPHIBIANS AND REPTILES OF INDOCHINA Publications Committee Robert S. Voss, Chair Board of Editors Jin Meng, Paleontology Lorenzo Prendini, Invertebrate Zoology RAOUL H. BAIN AND MARTHA M. HURLEY Robert S. Voss, Vertebrate Zoology Peter M. Whiteley, Anthropology Managing Editor Mary Knight Submission procedures can be found at http://research.amnh.org/scipubs All issues of Novitates and Bulletin are available on the web from http://digitallibrary.amnh.org/dspace Order printed copies from http://www.amnhshop.com or via standard mail from: American Museum of Natural History—Scientific Publications Central Park West at 79th Street New York, NY 10024 This paper meets the requirements of ANSI/NISO Z39.48-1992 (permanence of paper). AMNH 360 BULLETIN 2011 On the cover: Leptolalax sungi from Van Ban District, in northwestern Vietnam. Photo by Raoul H. Bain. BULLETIN OF THE AMERICAN MUSEUM OF NATURAL HISTORY A BIOGEOGRAPHIC SYNTHESIS OF THE AMPHIBIANS AND REPTILES OF INDOCHINA RAOUL H. BAIN Division of Vertebrate Zoology (Herpetology) and Center for Biodiversity and Conservation, American Museum of Natural History Life Sciences Section Canadian Museum of Nature, Ottawa, ON Canada MARTHA M. HURLEY Center for Biodiversity and Conservation, American Museum of Natural History Global Wildlife Conservation, Austin, TX BULLETIN OF THE AMERICAN MUSEUM OF NATURAL HISTORY Number 360, 138 pp., 9 figures, 13 tables Issued November 23, 2011 Copyright E American Museum of Natural History 2011 ISSN 0003-0090 CONTENTS Abstract......................................................... -
ECOLOGÍA Y CONSERVACIÓN EN LOS TELMATOBIUS ALTOANDINOS DE CHILE; EL CASO DE LA RANITA DEL LOA Gabriel Lobos V & Osvaldo Rojas M
ECOLOGÍA Y CONSERVACIÓN EN LOS TELMATOBIUS ALTOANDINOS DE CHILE; EL CASO DE LA RANITA DEL LOA Gabriel Lobos V & Osvaldo Rojas M Financia Organismo ejecutor Organismos asociados Tal como sabemos, la situación en que se encontraba la “Ranita del Loa” era de vulnerabilidad. Por eso, como Codelco no dudamos en participar de esta alianza colaborativa, que nos une para proteger y promover este verdadero regalo de la naturaleza. Hoy su nombre ha dado la vuelta al mundo, convirtiéndose en una embajadora de nuestra tierra y su preservación es un motor que moviliza reflexión y compromiso. Para Codelco, en base a su Política de Sustentabilidad y los desafíos permanentes de desarrollar acciones y promover el cuidado medioambiental, es muy importante contribuir a relevar el valor que la “Ranita del Loa” tiene para el entorno. Como lo hemos dicho en ocasiones anteriores, esto lo hacemos con cariño y con un enorme compromiso por esta tierra que nos acoge y por este desierto maravilloso que nunca deja de deslumbrarnos. Uno de nuestros Fondos Concursables Distritales, es la herramienta que nos permite apoyar este trabajo colaborativo de preservación. Siempre con una mirada educativa y resaltando la importancia de este anfibio y cómo la protegemos para preservarla. Este proyecto está en línea con los valores de Codelco y por eso valoramos con mucha fuerza el interés y, más que eso, la pasión de quienes se comprometieron en desarrollar este importante documento que le dará a nuestra Ranita del Loa la importancia y la visibilidad que se merece. Así reforzamos nuestro compromiso con Calama, con la Provincia de El Loa y por supuesto con nuestra gente. -
Species Groups Distributed Across Elevational Gradients Reveal Convergent and Continuous Genetic Adaptation to High Elevations
Species groups distributed across elevational gradients reveal convergent and continuous genetic adaptation to high elevations Yan-Bo Suna,1, Ting-Ting Fua,b,1, Jie-Qiong Jina, Robert W. Murphya,c, David M. Hillisd,2, Ya-Ping Zhanga,e,f,2, and Jing Chea,e,g,2 aState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, 650223 Kunming, China; bKunming College of Life Science, University of Chinese Academy of Sciences, 650204 Kunming, China; cCentre for Biodiversity and Conservation Biology, Royal Ontario Museum, Toronto, ON M5S 2C6, Canada; dDepartment of Integrative Biology and Biodiversity Center, University of Texas at Austin, Austin, TX 78712; eCenter for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, 650223 Kunming, China; fState Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan University, 650091 Kunming, China; and gSoutheast Asia Biodiversity Research Institute, Chinese Academy of Sciences, Yezin, 05282 Nay Pyi Taw, Myanmar Contributed by David M. Hillis, September 7, 2018 (sent for review August 7, 2018; reviewed by John H. Malone and Fuwen Wei) Although many cases of genetic adaptations to high elevations Most previous studies of the genetic processes of HEA have have been reported, the processes driving these modifications and compared species or populations from high elevations above the pace of their evolution remain unclear. Many high-elevation 3,500 m with those from low elevations to identify sequence adaptations (HEAs) are thought to have arisen in situ as popula- variation and/or expression shifts in the high-elevation group (8– tions rose with growing mountains. -
Chapter 7. Amphibians of the Indomalayan Realm
CHAPTER 7. AMPHIBIANS OF THE INDOMALAYAN REALM Figure 1. Summary of Red List categories Raoul Bain, S.D. Biju, Rafe Brown, Indraneil Das, Arvin Diesmos, Sushil Dutta, Human population density is very high across this region (averaging 124 people per for amphibians in the Indomalayan Realm. David Gower, Robert Inger, Djoko Iskandar, Yoshio Kaneko, Michael Wai Neng square kilometre across Southeast Asia), including, as it does, several of the most populous The percentage of species in each category Lau, Madhava Meegaskumbura, Annemarie Ohler, Theodore Papenfuss, countries on earth, such as India (with an estimated 1.1 billion people) and Indonesia (220 is also given. Rohan Pethiyagoda, Bryan Stuart, Mark Wilkinson and Feng Xie million). Population density ranges from a whopping 336 people per square kilometre in India, to 277 per square kilometre in the Philippines, 117 people per square kilometre in Indonesia, to 25 people per square kilometre in Lao P.D.R. The percentage of the population Red List Category Number of species THE GEOGRAPHIC AND HUMAN CONTEXT concentrated in urban areas also varies, with nearly 20% of people in Cambodia concentrated Extinct (EX) 20 in urban areas, 30% in India, around 48% in Indonesia, and nearly two-thirds of people in Extinct in the Wild (EW) 0 The Indomalayan Realm (sometimes termed the Oriental region) encompasses all of South the Philippines and Malaysia. With the exception of Singapore (gross national income per Critically Endangered (CR) 32 and Southeast Asia, including the Indonesian and Philippine archipelagos, and incorporating capita of US$24,000), all countries have a GNI per capita of less than US$5,000. -
I the Diversity of Amphibians in Tarutao Island, Satun Province With
i The Diversity of Amphibians in Tarutao Island, Satun Province with The Comparative Study of Hylarana eschatia (Inger, Stuart and Iskandar, 2009) between Tarutao Island and Peninsular Thailand Tshering Nidup A Thesis Submitted in Fulfillment of the Requirements for the Degree Masters of Science in Ecology Prince of Songkla University 2014 Copyright of Prince of Songkla University ii Thesis Title The Diversity of Amphibians in Tarutao Island, Satun Province with The Comparative Study of Hylarana eschatia (Inger, Stuart and Iskandar, 2009) between Tarutao Island and Peninsular Thailand Author Mr. Tshering Nidup Major Program Ecology Major Advisor Examining Committee: ………………………………. ……………………...……….Chairperson (Dr. Sansareeya Wangkulangkul) (Asst. Prof. Dr. Supiyanit Maiphae) Co-advisor ……………………..….……………........ …………………………………….... (Dr. Sansareeya Wangkulangkul) (Assoc. Prof. Dr. Chutamas Satasook) …………………………….……..……… ……………………. (Assoc. Prof. Dr. Chutamas Satasook) (Dr. Paul J. J. Bates) …………………………………………....... (Dr. Anchalee Aowphol) The Graduate School, Prince of Songkla University, has approved this thesis as fulfillment of the requirements for the Master of Science, Degree in Ecology. ………………………..…………… (Assoc. Prof. Dr. Teerapol Srichana) Dean of Graduate School iii This is to certify that the work here submitted is the result of the candidate’s own investigations. Due acknowledgement has been made of any assistance received. .…………...………………… Signature (Dr. Sansareeya Wangkulangkul) Major Advisor ……………...………………… Signature (Mr. Tshering Nidup)