Common-Type Acylphosphatase

Total Page:16

File Type:pdf, Size:1020Kb

Common-Type Acylphosphatase Biochem. J. (1997) 327, 177–184 (Printed in Great Britain) 177 Common-type acylphosphatase: steady-state kinetics and leaving-group dependence Paolo PAOLI*, Paolo CIRRI*, Lucia CAMICI*, Giampaolo MANAO*, Gianni CAPPUGI*, Gloriano MONETI† Giuseppe PIERACCINI†, Guido CAMICI* and Giampietro RAMPONI*1 *Dipartimento di Scienze Biochimiche, Universita' di Firenze, Viale Morgagni 50, Firenze, Italy, and †Centro Interdipartimentale di Servizi di Spettrometria di Massa, Universita' di Firenze, Italy ") A number of acyl phosphates differing in the structure of the acyl does it catalyse H# O–inorganic phosphate oxygen exchange. It moiety (as well as in the leaving-group pKa of the acids produced seems that no phosphoenzyme intermediate is formed in the in hydrolysis) have been synthesized. The K and V values for catalytic pathway. Furthermore, during the enzymic hydrolysis m max ") the bovine common-type acylphosphatase isoenzyme have been of benzoyl phosphate in the presence of O-labelled water, only ") measured at 25 mC and pH 5.3. The values of kcat differ widely in inorganic phosphate (and not benzoate) incorporates O, relation to the different structures of the tested acyl phosphates: suggesting that no acyl enzyme is formed transiently. All these linear relationships between log kcat and the leaving group pKa, findings, as well as the strong dependence of kcat upon the leaving as well as between log kcat}Km and the leaving-group pKa, were group pKa, suggest that neither a nucleophilic enzyme group nor observed. On the other hand, the Km values of the different general acid catalysis are involved in the catalytic pathway. The substrates are very close to each other, suggesting that the enzyme is competitively inhibited by Pi, but it is not inhibited by phosphate moiety of the substrate is the main chemical group the carboxylate ions produced during substrate hydrolysis, interacting with the enzyme active site in the formation of the suggesting that the last step of the catalytic process is the release enzyme–substrate Michaelis complex. The enzyme does not of Pi. The activation energy values for the catalysed and catalyse transphosphorylation between substrate and con- spontaneous hydrolysis of benzoyl phosphate have been de- centrated nucleophilic acceptors (glycerol and methanol); nor termined. INTRODUCTION dimensional structure of muscle isoenzyme has been determined by NMR techniques ([12], and citations herein). Recently, Acylphosphatase is a low-molecular-mass enzyme that catalyses crystals of the CT-isoenzyme have been produced [13] and the the hydrolysis of the carboxy-phosphate bond, and it is wide- three dimensional structure of this isoenzyme has been deter- spread in all vertebrate tissues [1]. There is considerable evidence mined by X-ray crystallography [14]. The overall structure of to suggest that the enzyme is involved in the control of ion-pump CT-acylphosphatase (a basic protein that consists of 98 amino- activities, since it is able to hydrolyse the aspartyl-phosphate acid residues) reveals a very compact protein, consisting of five- bonds that are produced during the action of membrane Na+-, # stranded mixed-sheet with two helices running parallel to the K+- ([2], and citations herein), and Ca +-pumps ([3], and citations sheet. The sheet is slightly curved with a right-handed twist, and herein). The enzyme is also implicated in the control of glycolytic the helices interact with one side of the sheet forming a compact flow, since it hydrolyses 1,3-bisphosphoglycerate, releasing Pi core [14]. Site-directed mutagenesis experiments (performed with and maintaining ADP concentrations at levels suitable to sustain MT-acylphosphatase) have suggested that Arg-23 and Asn-41 high glycolytic flow [4,5]. Previous papers demonstrated that the are essential residues [15,16], Arg-23 being involved in the binding thyroid hormones enhance acylphosphatase expression [6,7]. of the substrate phosphate moiety [14]. This paper deals These findings suggest that part of the excess of heat production with steady-state kinetic studies performed on the CT- in hyperthyroidism is caused by the increased levels of acylphosphatase isoenzyme. acylphosphatase, which has a role in a futile cycle involving 1,3- bisphosphoglycerate [8] and in the uncoupling of Na+-, K+- and # Ca +-pumps [2,3]. Two acylphosphatase isoenzymes are expressed in animals in MATERIALS AND METHODS a tissue-specific manner [9,10], which are named the muscle type Materials (MT) and the organ common (or erythrocyte) type (CT), since the former is highly expressed in skeletal muscle and heart, The CT-isoenzyme was purified from bovine testis as previously ") whereas the latter is expressed in all tissues [10], although its described [11]. [ O]water at 97% isotope enrichment was pur- $# expression is particularly high in erythrocytes, brain and testis. chased from Cambridge Isotope Laboratories. [ P]Pi (8500 Both isoenzymes have been isolated from a number of vertebrate Ci}mmol) was purchased from NEN. All other reagents were tissues and sequenced ([11], and citations herein). The three- the purest commercially available. Abbreviations used: BCA, bicinchoninic acid; MT, muscle type; TMS, trimethylsilyl; CT, organ common type; PTPase, phosphotyrosine protein phosphatase. 1 To whom correspondence should be addressed. 178 P. Paoli and others Acyl phosphates absorbance was read at 510 nm 15 min later. Controls without enzyme were prepared and incubated as described. The V and Acyl phosphates having differing acyl groups were synthesized. max K (means S.E.) were calculated by fitting the initial rate data Benzoyl phosphate and 2-methoxybenzoyl phosphate were pre- m ³ to the Michaelis–Menten equation with the non-linear regression pared as previously described [17,18]. Acetyl phosphate, pro- program Fig. P (Biosoft). All initial rate measurements were pionyl phosphate, and butyryl phosphate were synthesized as carried out at least in triplicate. follows: 40 mmol of each acyl anhydride were slowly added to a mixture of 40 mmol of phosphoric acid dissolved in 48 ml of 30% (v}v) pyridine, previously chilled in ice. The mixture was Protein assay stirred for about 1 h, then 120 mmol of LiCl dissolved in 12 ml of water was added. The acyl phosphates were precipitated by Protein concentration was determined by the bicinchoninic acid adding cold ethanol or, in some cases, ethanol–acetone mixtures. (BCA) kit method (Sigma), using BSA as standard. Phenylacetyl and p-nitrobenzoyl phosphates were prepared using a similar but slightly modified method, since the corresponding Benzoyl phosphate enzymic hydrolysis in [18O]water anhydrides were not commercially available. Anhydrides were then synthesized from free acid and acyl chlorides as follows: Benzoyl phosphate (1 mM final concentration) was dissolved in ") 40 mmol of each free acid and 40 mmol of triethylamine were [ O]water, and pH was adjusted to 5.5. A small amount of dissolved in 8 ml of anhydrous tetrahydrofuran. The solutions acylphosphatase was then added, and the mixture was incubated were chilled in ice, and 40 mmol of the corresponding acyl for 40 min at room temperature to achieve complete hydrolysis. chloride was slowly added under stirring. The precipitates formed A portion of 50 µl was withdrawn, transferred in a screw-cap during the reactions were discarded by filtration. The acid conical vial and dried. Successively, sample derivatives were anhydrides in the mixture were concentrated under vacuum and obtained for GLC–MS analysis, as described below. added to the phosphate–pyridine mixture as described for acetyl phosphate, propionyl phosphate and butyryl phosphate syn- 18 thesis. Product yields ranging from 30% to 50% were obtained. Inorganic phosphate–medium water O exchange Some acyl phosphates, such as acetyl phosphate, propionyl Mes (10 mM final concentration) and Pi (100 mM final con- phosphate and butyryl phosphate, were purified by repeated centration) were dissolved in water and the pH was adjusted to fractional precipitation with ethanol, whereas phenylacetyl phos- 5.5 with NaOH. Then 100 µl samples were withdrawn, transferred phate and p-nitrobenzoyl phosphate were purified by preparative to a small screw-cap conical vial and dried. The residue was ") reversed-phase chromatography using a C18 preparative bulk- dissolved in 100 µlof[ O]water, and 1 µl of acylphosphatase (15 packing phase (55–105 µm, Waters, U.S.A.) following the units; the unit is defined as the amount of enzyme that catalyses procedure previously described for the purification of 2-meth- the hydrolysis of 1 µmol of benzoyl phosphate at 25 mC and oxybenzoyl phosphate [18]. The final products were analysed for pH 5.3) was added. The mixture was incubated at room tem- acyl phosphate bond content using the hydroxylamine–ferric perature. Aliquots of 1 µl were withdrawn at various incubation chloride photometric method and calibration curves described in times and diluted with 100 µl of acetonitrile contained in a small the following section [19]. The free Pi content in the acyl screw-cap conical vial. The mixture was dried, and derivatives of phosphates was assayed by the method of Baginski et al. [20]. $# inorganic phosphate were formed for GLC–MS analysis, as Benzoyl [ P]phosphate was synthesized as previously described $# described below. In order to check the performance of the [21] using [ P]Pi and benzoic anhydride. method, a parallel experiment with calf intestine alkaline phos- phatase was performed [in this experiment, the pH of the Enzyme assay incubation mixture (100 µl) was adjusted to 9.0, and 5 enzyme The 2-methoxybenzoyl and benzoyl phosphatase activities were units were added (the unit is defined as the amount of enzyme determined by continuous spectrophotometric assays as pre- that catalyses the hydrolysis of 1 µmol of p-nitrophenyl phos- viously described [18,22]. p-Nitrobenzoyl phosphatase activity phate at 25 mC and pH 9.8)]. It is well known that alkaline was assayed by a similar method following the time-dependent phosphatase forms a covalent enzyme–phosphate intermediate during its catalytic process before releasing Pi [23], and thus is absorbance change owing to the absorption difference between ") the substrate and its hydrolysis product at 313 nm.
Recommended publications
  • Supplementary Table S4. FGA Co-Expressed Gene List in LUAD
    Supplementary Table S4. FGA co-expressed gene list in LUAD tumors Symbol R Locus Description FGG 0.919 4q28 fibrinogen gamma chain FGL1 0.635 8p22 fibrinogen-like 1 SLC7A2 0.536 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 DUSP4 0.521 8p12-p11 dual specificity phosphatase 4 HAL 0.51 12q22-q24.1histidine ammonia-lyase PDE4D 0.499 5q12 phosphodiesterase 4D, cAMP-specific FURIN 0.497 15q26.1 furin (paired basic amino acid cleaving enzyme) CPS1 0.49 2q35 carbamoyl-phosphate synthase 1, mitochondrial TESC 0.478 12q24.22 tescalcin INHA 0.465 2q35 inhibin, alpha S100P 0.461 4p16 S100 calcium binding protein P VPS37A 0.447 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) SLC16A14 0.447 2q36.3 solute carrier family 16, member 14 PPARGC1A 0.443 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha SIK1 0.435 21q22.3 salt-inducible kinase 1 IRS2 0.434 13q34 insulin receptor substrate 2 RND1 0.433 12q12 Rho family GTPase 1 HGD 0.433 3q13.33 homogentisate 1,2-dioxygenase PTP4A1 0.432 6q12 protein tyrosine phosphatase type IVA, member 1 C8orf4 0.428 8p11.2 chromosome 8 open reading frame 4 DDC 0.427 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) TACC2 0.427 10q26 transforming, acidic coiled-coil containing protein 2 MUC13 0.422 3q21.2 mucin 13, cell surface associated C5 0.412 9q33-q34 complement component 5 NR4A2 0.412 2q22-q23 nuclear receptor subfamily 4, group A, member 2 EYS 0.411 6q12 eyes shut homolog (Drosophila) GPX2 0.406 14q24.1 glutathione peroxidase
    [Show full text]
  • Early Growth Response 1 Regulates Hematopoietic Support and Proliferation in Human Primary Bone Marrow Stromal Cells
    Hematopoiesis SUPPLEMENTARY APPENDIX Early growth response 1 regulates hematopoietic support and proliferation in human primary bone marrow stromal cells Hongzhe Li, 1,2 Hooi-Ching Lim, 1,2 Dimitra Zacharaki, 1,2 Xiaojie Xian, 2,3 Keane J.G. Kenswil, 4 Sandro Bräunig, 1,2 Marc H.G.P. Raaijmakers, 4 Niels-Bjarne Woods, 2,3 Jenny Hansson, 1,2 and Stefan Scheding 1,2,5 1Division of Molecular Hematology, Department of Laboratory Medicine, Lund University, Lund, Sweden; 2Lund Stem Cell Center, Depart - ment of Laboratory Medicine, Lund University, Lund, Sweden; 3Division of Molecular Medicine and Gene Therapy, Department of Labora - tory Medicine, Lund University, Lund, Sweden; 4Department of Hematology, Erasmus MC Cancer Institute, Rotterdam, the Netherlands and 5Department of Hematology, Skåne University Hospital Lund, Skåne, Sweden ©2020 Ferrata Storti Foundation. This is an open-access paper. doi:10.3324/haematol. 2019.216648 Received: January 14, 2019. Accepted: July 19, 2019. Pre-published: August 1, 2019. Correspondence: STEFAN SCHEDING - [email protected] Li et al.: Supplemental data 1. Supplemental Materials and Methods BM-MNC isolation Bone marrow mononuclear cells (BM-MNC) from BM aspiration samples were isolated by density gradient centrifugation (LSM 1077 Lymphocyte, PAA, Pasching, Austria) either with or without prior incubation with RosetteSep Human Mesenchymal Stem Cell Enrichment Cocktail (STEMCELL Technologies, Vancouver, Canada) for lineage depletion (CD3, CD14, CD19, CD38, CD66b, glycophorin A). BM-MNCs from fetal long bones and adult hip bones were isolated as reported previously 1 by gently crushing bones (femora, tibiae, fibulae, humeri, radii and ulna) in PBS+0.5% FCS subsequent passing of the cell suspension through a 40-µm filter.
    [Show full text]
  • Supplementary Information
    Supplementary information (a) (b) Figure S1. Resistant (a) and sensitive (b) gene scores plotted against subsystems involved in cell regulation. The small circles represent the individual hits and the large circles represent the mean of each subsystem. Each individual score signifies the mean of 12 trials – three biological and four technical. The p-value was calculated as a two-tailed t-test and significance was determined using the Benjamini-Hochberg procedure; false discovery rate was selected to be 0.1. Plots constructed using Pathway Tools, Omics Dashboard. Figure S2. Connectivity map displaying the predicted functional associations between the silver-resistant gene hits; disconnected gene hits not shown. The thicknesses of the lines indicate the degree of confidence prediction for the given interaction, based on fusion, co-occurrence, experimental and co-expression data. Figure produced using STRING (version 10.5) and a medium confidence score (approximate probability) of 0.4. Figure S3. Connectivity map displaying the predicted functional associations between the silver-sensitive gene hits; disconnected gene hits not shown. The thicknesses of the lines indicate the degree of confidence prediction for the given interaction, based on fusion, co-occurrence, experimental and co-expression data. Figure produced using STRING (version 10.5) and a medium confidence score (approximate probability) of 0.4. Figure S4. Metabolic overview of the pathways in Escherichia coli. The pathways involved in silver-resistance are coloured according to respective normalized score. Each individual score represents the mean of 12 trials – three biological and four technical. Amino acid – upward pointing triangle, carbohydrate – square, proteins – diamond, purines – vertical ellipse, cofactor – downward pointing triangle, tRNA – tee, and other – circle.
    [Show full text]
  • Supplementary Table 1
    Supplementary Table 1. 492 genes are unique to 0 h post-heat timepoint. The name, p-value, fold change, location and family of each gene are indicated. Genes were filtered for an absolute value log2 ration 1.5 and a significance value of p ≤ 0.05. Symbol p-value Log Gene Name Location Family Ratio ABCA13 1.87E-02 3.292 ATP-binding cassette, sub-family unknown transporter A (ABC1), member 13 ABCB1 1.93E-02 −1.819 ATP-binding cassette, sub-family Plasma transporter B (MDR/TAP), member 1 Membrane ABCC3 2.83E-02 2.016 ATP-binding cassette, sub-family Plasma transporter C (CFTR/MRP), member 3 Membrane ABHD6 7.79E-03 −2.717 abhydrolase domain containing 6 Cytoplasm enzyme ACAT1 4.10E-02 3.009 acetyl-CoA acetyltransferase 1 Cytoplasm enzyme ACBD4 2.66E-03 1.722 acyl-CoA binding domain unknown other containing 4 ACSL5 1.86E-02 −2.876 acyl-CoA synthetase long-chain Cytoplasm enzyme family member 5 ADAM23 3.33E-02 −3.008 ADAM metallopeptidase domain Plasma peptidase 23 Membrane ADAM29 5.58E-03 3.463 ADAM metallopeptidase domain Plasma peptidase 29 Membrane ADAMTS17 2.67E-04 3.051 ADAM metallopeptidase with Extracellular other thrombospondin type 1 motif, 17 Space ADCYAP1R1 1.20E-02 1.848 adenylate cyclase activating Plasma G-protein polypeptide 1 (pituitary) receptor Membrane coupled type I receptor ADH6 (includes 4.02E-02 −1.845 alcohol dehydrogenase 6 (class Cytoplasm enzyme EG:130) V) AHSA2 1.54E-04 −1.6 AHA1, activator of heat shock unknown other 90kDa protein ATPase homolog 2 (yeast) AK5 3.32E-02 1.658 adenylate kinase 5 Cytoplasm kinase AK7
    [Show full text]
  • Ancestral Genome Reconstruction Identifies the Evolutionary Basis for Trait Acquisition in Polyphosphate Accumulating Bacteria
    The ISME Journal (2016) 10, 2931–2945 OPEN © 2016 International Society for Microbial Ecology All rights reserved 1751-7362/16 www.nature.com/ismej ORIGINAL ARTICLE Ancestral genome reconstruction identifies the evolutionary basis for trait acquisition in polyphosphate accumulating bacteria Ben O Oyserman1, Francisco Moya1, Christopher E Lawson1, Antonio L Garcia1, Mark Vogt1, Mitchell Heffernen1, Daniel R Noguera1 and Katherine D McMahon1,2 1Department of Civil and Environmental Engineering, University of Wisconsin—Madison, Madison, WI, USA and 2Department of Bacteriology, University of Wisconsin—Madison, Madison, WI, USA The evolution of complex traits is hypothesized to occur incrementally. Identifying the transitions that lead to extant complex traits may provide a better understanding of the genetic nature of the observed phenotype. A keystone functional group in wastewater treatment processes are polyphosphate accumulating organisms (PAOs), however the evolution of the PAO phenotype has yet to be explicitly investigated and the specific metabolic traits that discriminate non-PAO from PAO are currently unknown. Here we perform the first comprehensive investigation on the evolution of the PAO phenotype using the model uncultured organism Candidatus Accumulibacter phosphatis (Accumu- libacter) through ancestral genome reconstruction, identification of horizontal gene transfer, and a kinetic/stoichiometric characterization of Accumulibacter Clade IIA. The analysis of Accumulibacter’s last common ancestor identified 135 laterally derived
    [Show full text]
  • Effects of Acylphosphatase on the Activity of Erythrocyte Membrane Ca2+ Pump*
    THEJOURNAL OF BIOLOGICALCHEMISTRY Vol. 266, No. 17, Issue of June 15, pp. 10867-10871,1991 0 1991 by The American Society for Biochemistry andMolecular Biology, Inc. Printed in U.S.A. Effects of Acylphosphataseon the Activity of Erythrocyte Membrane Ca2+ Pump* (Received for publication, September 24, 1990) Paolo NassiS, Chiara Nediani, Gianfranco Liguri,Niccolo Taddei, and GiampietroRamponi From the Dipartimento di Scienze Biochimiche, Universita di Firenze, VialeG. Morgagni 50, 50134 Florence, Italy Acylphosphatase, purifiedfrom human erythrocytes, M (1).Many studies have focused on the properties and the actively hydrolyzes the acylphosphorylated interme- action mechanism of RBC membrane Ca2+-ATPase, andac- diate of human redblood cell membrane Ca2+-ATPase. cumulated evidence indicates that ATP hydrolysis proceeds This effect occurred with acylphosphatase amounts through (up aseries of elementary reactions that involve the Ca2+- to 10 units/mg membrane protein) that fall within the dependent formation of an acylphosphorylated intermediate physiologicalrange. Furthermore, a verylow K,,, (2). On the other hand, the efficiency of the calcium pump is value, 3.41 f 1.16 (S.E.) nM, suggests a high affinity still controversial since differing Ca2’/ATP ratios have been in acylphosphatase for thephosphoenzyme intermedi- reported (3), suggesting that thestoichiometry of this process ate, whichis consistent with the small numberof Ca2+- ATPase units in human erythrocyte membrane.Acyl- maybe 1 or 2 calcium ions transported permol of ATP phosphatase addition tored cell membranes resulted in hydrolyzed. It is well known that human RBC Ca*+-ATPase a significant increase in the rate of ATP hydrolysis. is activated by calmodulin and that this effect is associated Maximal stimulation (about 2-fold over basal) wasob- with an increased rate in phosphorylated intermediate for- tained at 2 units/mg membrane protein, witha concom- mation (2).
    [Show full text]
  • Solution Structure and Conformational Heterogeneity of Acylphosphatase from Bacillus Subtilis
    FEBS Letters 584 (2010) 2852–2856 journal homepage: www.FEBSLetters.org Solution structure and conformational heterogeneity of acylphosphatase from Bacillus subtilis Jicheng Hu a,b,c, Dan Li b, Xiao-Dong Su b, Changwen Jin a,b,c, Bin Xia a,b,c,* a Beijing Nuclear Magnetic Resonance Center, Peking University, Beijing 100871, China b School of Life Sciences, Peking University, Beijing 100871, China c College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China article info abstract Article history: Acylphosphatase is a small enzyme that catalyzes the hydrolysis of acyl phosphates. Here, we present Received 18 March 2010 the solution structure of acylphosphatase from Bacillus subtilis (BsAcP), the first from a Gram-posi- Revised 26 April 2010 tive bacterium. We found that its active site is disordered, whereas it converted to an ordered state Accepted 26 April 2010 upon ligand binding. The structure of BsAcP is sensitive to pH and it has multiple conformations in Available online 4 May 2010 equilibrium at acidic pH (pH < 5.8). Only one main conformation could bind ligand, and the relative Edited by Miguel De la Rosa population of these states is modulated by ligand concentration. This study provides direct evidence for the role of ligand in conformational selection. Ó 2010 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved. Keywords: Acylphosphatase Solution structure Multiple conformation Conformational selection Nuclear magnetic resonance 1. Introduction site forms a cradle-like and ordered conformation, and a sulfate and a chloride ion near Arg23 and Asn41 side-chains make exten- Acylphosphatase (AcP, EC 3.6.1.7), a widespread enzyme that is sive interactions with last three residues (Gly-Val-Phe) of loop found from archaebacteria to human, specifically catalyses the 14–21 [7].
    [Show full text]
  • Sodium Dysregulation Coupled with Calcium Entry Leads to Muscular
    Sodium dysregulation coupled with calcium entry leads to muscular dystrophy in mice A dissertation submitted to the Division of Research and Advanced Studies Of the University of Cincinnati In partial fulfillment of the Requirements for the degree of DOCTOR OF PHILOSOPHY (Ph.D.) In the department of Molecular and Developmental Biology of the College of Medicine 2014 Adam R. Burr B.S. University of Minnesota, 2007 i Abstract Duchenne Muscular Dystrophy (DMD) and many of the limb girdle muscular dystrophies form a family of diseases called sarcoglycanopathies. In these diseases, mutation of any of a host of membrane and membrane associated proteins leads to increased stretch induced damage, aberrant signaling, and increased activity of non-specific cation channels, inducing muscle necrosis. Due to ongoing necrosis, DMD follows a progressive clinical course that leads to death in the mid-twenties. This course is slowed only modestly by high dose corticosteroids, which cause a plethora of harsh side effects. Targeted therapies are needed to ameliorate this disease until a more permanent therapy such as replacement of the mutated gene can be routinely performed. Here, we identified sodium calcium exchanger 1 (NCX1) as a potential therapeutic target. We started from the observation that sodium calcium exchanger 1 (NCX1) was upregulated during the necrotic phase of the disease in Sgcd-/- mice, which have similar pathology and mechanism of disease to boys with DMD. To test the causal effect of NCX1 overexpression on disease, we generated mice that overexpress NCX1 specifically in skeletal muscle. By Western blotting and immunofluorescence, we showed that NCX1 transgenic mice express more NCX1 protein in a similar localization pattern as endogenous NCX1.
    [Show full text]
  • 12) United States Patent (10
    US007635572B2 (12) UnitedO States Patent (10) Patent No.: US 7,635,572 B2 Zhou et al. (45) Date of Patent: Dec. 22, 2009 (54) METHODS FOR CONDUCTING ASSAYS FOR 5,506,121 A 4/1996 Skerra et al. ENZYME ACTIVITY ON PROTEIN 5,510,270 A 4/1996 Fodor et al. MICROARRAYS 5,512,492 A 4/1996 Herron et al. 5,516,635 A 5/1996 Ekins et al. (75) Inventors: Fang X. Zhou, New Haven, CT (US); 5,532,128 A 7/1996 Eggers Barry Schweitzer, Cheshire, CT (US) 5,538,897 A 7/1996 Yates, III et al. s s 5,541,070 A 7/1996 Kauvar (73) Assignee: Life Technologies Corporation, .. S.E. al Carlsbad, CA (US) 5,585,069 A 12/1996 Zanzucchi et al. 5,585,639 A 12/1996 Dorsel et al. (*) Notice: Subject to any disclaimer, the term of this 5,593,838 A 1/1997 Zanzucchi et al. patent is extended or adjusted under 35 5,605,662 A 2f1997 Heller et al. U.S.C. 154(b) by 0 days. 5,620,850 A 4/1997 Bamdad et al. 5,624,711 A 4/1997 Sundberg et al. (21) Appl. No.: 10/865,431 5,627,369 A 5/1997 Vestal et al. 5,629,213 A 5/1997 Kornguth et al. (22) Filed: Jun. 9, 2004 (Continued) (65) Prior Publication Data FOREIGN PATENT DOCUMENTS US 2005/O118665 A1 Jun. 2, 2005 EP 596421 10, 1993 EP 0619321 12/1994 (51) Int. Cl. EP O664452 7, 1995 CI2O 1/50 (2006.01) EP O818467 1, 1998 (52) U.S.
    [Show full text]
  • Acylphosphatase Is Involved in Differentiation of K562 Cells
    Cell Death and Differentiation (1997) 4, 334 ± 340 1997 Stockton Press All rights reserved 13509047/97 $12.00 Acylphosphatase is involved in differentiation of K562 cells Paola Chiarugi, Donatella Degl'Innocenti, Letizia Taddei, phosphorylated intermediate formed during the action of the + + Giovanni Raugei, Andrea Berti, Stefania Rigacci and Na ,K ATPase of erythrocyte plasmamembrane (Nassi et al, 2+ Giampietro Ramponi 1993) and of the Ca -ATPase of both erythrocyte membrane (Nassi et al, 1991) and heart sarcolemma (Nediani et al, Dipartimento di Scienze Biochimiche-viale Morgagni 50, 50134 Firenze, Italy. 1992). In all these cases high affinities and low apparent Km Tel.: ++39 55 413765. Fax: ++39 55 4222725 values of the enzyme for the phosphorylated intermediate formed during the activity of the ions pump have been Received 16.7.96; revised 30.9.96; accepted 22.11.96 demonstrated (Nediani et al, 1995). The action of acylpho- Edited by A. Finazzi-Agro sphatase on red blood cell membrane causes a significant increase of the rate of ATP hydrolysis and is accompanied by a decrease of the Ca2+ transport rate. These effects lead to a Abstract reduction in the efficiency of the membrane calcium pump. + + The level of both isoforms of acylphosphatase was evaluated Similar results have been obtained with the Na ,K pump in in the human erythroleukemia K562 cell line during the erythrocyte membrane. Physiological amounts of both isoenzymes significantly reduced the Na+/ATP stoichiometry differentiation. K562 cells were treated with PMA, which of the Na+,K+transport in red blood cell membrane. induces megakaryocytic differentiation, and with aphidicolin The modification of the acylphosphatase level during cell or hemin, which stimulate erythrocytic differentiation.
    [Show full text]
  • Characterization of Two G-Protein Coupled Receptors and One Fox Transcription Factor in Drosophila Embryonic Development by Cait
    Characterization of Two G-Protein Coupled Receptors and One Fox Transcription Factor in Drosophila Embryonic Development By Caitlin D. Hanlon A dissertation submitted to Johns Hopkins University in conformity with the requirements for the degree of Doctor of Philosophy Baltimore, Maryland July 2015 ABSTRACT Cell migration is an exquisitely intricate process common to many higher organisms. Variations in the signals driving cell movement, the distance cells travel, and whether cells migrate as individuals, clusters, or as intact epithelia are all possible. Cell migration can be beneficial, as in development or wound healing, or detrimental, as in cancer metastasis. To begin to unravel the complexities inherent to cell migration, the Andrew lab uses the Drosophila salivary gland as a relatively simple model system for learning the molecular/cellular events underlying cell movement. The salivary gland begins as a placode of polarized columnar epithelial cells on the surface of the embryo that invaginates and move dorsally until a turning point is reached. There, it reorients and begins posterior migration, which continues until the gland reaches its final position along the anterior-posterior axis of the embryo. The broad goal of my work is to identify and characterize other key players in salivary gland migration. I characterized two G-protein coupled receptors (GPCRs) – Tre1 and mthl5 – which are expressed dynamically in the embryo. By creating a null allele of Tre1, I found that Tre1 plays a key role in germ cell migration and affects microtubule organization in the migrating salivary gland. I created a mthl5 mutant allele using the CRISPR/Cas9 system. mthl5 plays a role in the cell shape changes that drive salivary gland invagination.
    [Show full text]
  • POLSKIE TOWARZYSTWO BIOCHEMICZNE Postępy Biochemii
    POLSKIE TOWARZYSTWO BIOCHEMICZNE Postępy Biochemii http://rcin.org.pl WSKAZÓWKI DLA AUTORÓW Kwartalnik „Postępy Biochemii” publikuje artykuły monograficzne omawiające wąskie tematy, oraz artykuły przeglądowe referujące szersze zagadnienia z biochemii i nauk pokrewnych. Artykuły pierwszego typu winny w sposób syntetyczny omawiać wybrany temat na podstawie możliwie pełnego piśmiennictwa z kilku ostatnich lat, a artykuły drugiego typu na podstawie piśmiennictwa z ostatnich dwu lat. Objętość takich artykułów nie powinna przekraczać 25 stron maszynopisu (nie licząc ilustracji i piśmiennictwa). Kwartalnik publikuje także artykuły typu minireviews, do 10 stron maszynopisu, z dziedziny zainteresowań autora, opracowane na podstawie najnow­ szego piśmiennictwa, wystarczającego dla zilustrowania problemu. Ponadto kwartalnik publikuje krótkie noty, do 5 stron maszynopisu, informujące o nowych, interesujących osiągnięciach biochemii i nauk pokrewnych, oraz noty przybliżające historię badań w zakresie różnych dziedzin biochemii. Przekazanie artykułu do Redakcji jest równoznaczne z oświadczeniem, że nadesłana praca nie była i nie będzie publikowana w innym czasopiśmie, jeżeli zostanie ogłoszona w „Postępach Biochemii”. Autorzy artykułu odpowiadają za prawidłowość i ścisłość podanych informacji. Autorów obowiązuje korekta autorska. Koszty zmian tekstu w korekcie (poza poprawieniem błędów drukarskich) ponoszą autorzy. Artykuły honoruje się według obowiązujących stawek. Autorzy otrzymują bezpłatnie 25 odbitek swego artykułu; zamówienia na dodatkowe odbitki (płatne) należy zgłosić pisemnie odsyłając pracę po korekcie autorskiej. Redakcja prosi autorów o przestrzeganie następujących wskazówek: Forma maszynopisu: maszynopis pracy i wszelkie załączniki należy nadsyłać w dwu egzem­ plarzach. Maszynopis powinien być napisany jednostronnie, z podwójną interlinią, z marginesem ok. 4 cm po lewej i ok. 1 cm po prawej stronie; nie może zawierać więcej niż 60 znaków w jednym wierszu nie więcej niż 30 wierszy na stronie zgodnie z Normą Polską.
    [Show full text]