Morphological Adaptations of the Sand-Swimmer Lizard
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Modeling and Partitioning the Nucleotide Evolutionary Process for Phylogenetic and Comparative Genomic Inference
University of Central Florida STARS Electronic Theses and Dissertations, 2004-2019 2007 Modeling And Partitioning The Nucleotide Evolutionary Process For Phylogenetic And Comparative Genomic Inference Todd Castoe University of Central Florida Part of the Biology Commons Find similar works at: https://stars.library.ucf.edu/etd University of Central Florida Libraries http://library.ucf.edu This Doctoral Dissertation (Open Access) is brought to you for free and open access by STARS. It has been accepted for inclusion in Electronic Theses and Dissertations, 2004-2019 by an authorized administrator of STARS. For more information, please contact [email protected]. STARS Citation Castoe, Todd, "Modeling And Partitioning The Nucleotide Evolutionary Process For Phylogenetic And Comparative Genomic Inference" (2007). Electronic Theses and Dissertations, 2004-2019. 3111. https://stars.library.ucf.edu/etd/3111 MODELING AND PARTITIONING THE NUCLEOTIDE EVOLUTIONARY PROCESS FOR PHYLOGENETIC AND COMPARATIVE GENOMIC INFERENCE by TODD A. CASTOE B.S. SUNY – College of Environmental Science and Forestry, 1999 M.S. The University of Texas at Arlington, 2001 A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biomolecular Sciences in the Burnett College of Biomedical Sciences at the University of Central Florida Orlando, Florida Spring Term 2007 Major Professor: Christopher L. Parkinson © 2007 Todd A. Castoe ii ABSTRACT The transformation of genomic data into functionally relevant information about the composition of biological systems hinges critically on the field of computational genome biology, at the core of which lies comparative genomics. The aim of comparative genomics is to extract meaningful functional information from the differences and similarities observed across genomes of different organisms. -
Zootaxa, a New Genus and Species of Eyelid-Less And
Zootaxa 1873: 50–60 (2008) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2008 · Magnolia Press ISSN 1175-5334 (online edition) A new genus and species of eyelid-less and limb reduced gymnophthalmid lizard from northeastern Brazil (Squamata, Gymnophthalmidae) MIGUEL TREFAUT RODRIGUES1 & EDNILZA MARANHÃO DOS SANTOS2 1Universidade de São Paulo, Instituto de Biociências, Departamento de Zoologia, Caixa Postal 11.461, CEP 05422-970, São Paulo, Brazil. E-mail: [email protected] 2Universidade Federal Rural de Pernambuco, Unidade Acadêmica de Serra Talhada, Departamento de Biologia, Fazenda Saco, s/n, Serra Talhada, Pernambuco, Brazil. E-mail: [email protected] Abstract Scriptosaura catimbau, a new genus and species of elongate, fossorial, sand swimming eyelid-less gymnophthalmid li- zard is described on the basis of specimens obtained at Fazenda Porto Seguro, municipality of Buíque, State of Pernam- buco, in the Caatingas of northeastern Brazil. The type locality is entirely included within the area of the recently created Parque Nacional do Catimbau. The new lizard lacks external forelimbs, has rudimentary styliform hindlimbs and is fur- ther characterized by the absence of prefrontal, frontal, frontoparietal and supraocular scales, and by having one pair of chin shields. A member of the Gymnophthalmini radiation, the new genus is considered to be sister to Calyptommatus from which it differs externally by the absence of an ocular scale and absence of an enlarged temporal scale. Key words: Scriptosaura catimbau, new genus, Gymnophthalmidae, taxonomy, Catimbau Nacional Park, Pernambuco State, Brazil, Caatingas Resumo Scriptosaura catimbau, um novo gênero e espécie arenícola de lagarto gimnoftalmídeo fossorial com corpo alongado e sem pálpebra é descrito com base em espécimes obtidos na Fazenda Porto Seguro, município de Buíque, estado de Per- nambuco, nas Caatingas do nordeste brasileiro. -
Anfibios Y Reptiles 1 Keiner Meza-Tilvez1,2, Adolfo Mulet-Paso1,2 & Ronald Zambrano-Cantillo1 1Universidad De Cartagena & 2Fauna Silvestre Fundación
Fauna del Jardín Botánico “Guillermo Piñeres” de Cartagena, Turbaco, COLOMBIA Anfibios y Reptiles 1 Keiner Meza-Tilvez1,2, Adolfo Mulet-Paso1,2 & Ronald Zambrano-Cantillo1 1 2 Universidad de Cartagena & Fauna Silvestre Fundación Fotos: Adolfo Mulet Paso (AMP) – Hugo Claessen (HC) – Jairo H. Maldonado (JHM) – Jesús Torres Meza (JTM) – José Luis Pérez-González (JPG) – Jose Luna (JL) – Keiner Meza-Tilvez (KMT) – Luis Alberto Rueda Solano (LRS) – Mauricio Rivera Correa (MRC) – Juan Salvador Mendoza (JSM). © Jardín Botánico de Cartagena “Guillermo Piñeres” [[email protected]] Macho = (M), Hembra = (H) y Juvenil = (Juv.) [fieldguides.fieldmuseum.org] [1097] versión 1 12/2018 1 Rhinella horribilis 2 Rhinella humboldti 3 Dendrobates truncatus 4 Boana pugnax BUFONIDAE (foto KMT) BUFONIDAE (foto KMT) DENDROBATIDAE (foto KMT) HYLIDAE (foto KMT) 5 Boana xerophylla 6 Dendropsophus microcephalus 7 Scarthyla vigilans 8 Scinax rostratus HYLIDAE (foto LRS) HYLIDAE (foto KMT) HYLIDAE (foto KMT) HYLIDAE (foto KMT) 9 Scinax ruber 10 Trachycephalus typhonius 11 Engystomops pustulosus 12 Leptodactylus fragilis HYLIDAE (foto KMT) HYLIDAE (foto KMT) LEPTODACTYLIDAE (foto KMT) LEPTODACTYLIDAE (foto LRS) 13 Leptodactylus insularum 14 Pleurodema brachyops 15 Elachistocleis pearsei 16 Agalychnis callidryas LEPTODACTYLIDAE (foto AMP) LEPTODACTYLIDAE (foto KMT) MICROHYLIDAE (foto MRC) PHYLLOMEDUSIDAE (foto HC) 17 Phyllomedusa venusta 18 Basiliscus basiliscus (M) 19 Basiliscus basiliscus (Juv.) 20 Anolis auratus PHYLLOMEDUSIDAE (foto AMP) CORYTOPHANIDAE (foto KMT) CORYTOPHANIDAE (foto AMP) DACTYLOIDAE (foto AMP) Fauna del Jardín Botánico “Guillermo Piñeres” de Cartagena, Turbaco, COLOMBIA Anfibios y Reptiles 2 Keiner Meza-Tilvez1,2, Adolfo Mulet-Paso1,2 & Ronald Zambrano-Cantillo1 1 2 Universidad de Cartagena & Fauna Silvestre Fundación Fotos: Adolfo Mulet Paso (AMP) – Hugo Claessen (HC) – Jairo H. -
The Sclerotic Ring: Evolutionary Trends in Squamates
The sclerotic ring: Evolutionary trends in squamates by Jade Atkins A Thesis Submitted to Saint Mary’s University, Halifax, Nova Scotia in Partial Fulfillment of the Requirements for the Degree of Master of Science in Applied Science July, 2014, Halifax Nova Scotia © Jade Atkins, 2014 Approved: Dr. Tamara Franz-Odendaal Supervisor Approved: Dr. Matthew Vickaryous External Examiner Approved: Dr. Tim Fedak Supervisory Committee Member Approved: Dr. Ron Russell Supervisory Committee Member Submitted: July 30, 2014 Dedication This thesis is dedicated to my family, friends, and mentors who helped me get to where I am today. Thank you. ! ii Table of Contents Title page ........................................................................................................................ i Dedication ...................................................................................................................... ii List of figures ................................................................................................................. v List of tables ................................................................................................................ vii Abstract .......................................................................................................................... x List of abbreviations and definitions ............................................................................ xi Acknowledgements .................................................................................................... -
A New Computing Environment for Modeling Species Distribution
EXPLORATORY RESEARCH RECOGNIZED WORLDWIDE Botany, ecology, zoology, plant and animal genetics. In these and other sub-areas of Biological Sciences, Brazilian scientists contributed with results recognized worldwide. FAPESP,São Paulo Research Foundation, is one of the main Brazilian agencies for the promotion of research.The foundation supports the training of human resources and the consolidation and expansion of research in the state of São Paulo. Thematic Projects are research projects that aim at world class results, usually gathering multidisciplinary teams around a major theme. Because of their exploratory nature, the projects can have a duration of up to five years. SCIENTIFIC OPPORTUNITIES IN SÃO PAULO,BRAZIL Brazil is one of the four main emerging nations. More than ten thousand doctorate level scientists are formed yearly and the country ranks 13th in the number of scientific papers published. The State of São Paulo, with 40 million people and 34% of Brazil’s GNP responds for 52% of the science created in Brazil.The state hosts important universities like the University of São Paulo (USP) and the State University of Campinas (Unicamp), the growing São Paulo State University (UNESP), Federal University of São Paulo (UNIFESP), Federal University of ABC (ABC is a metropolitan region in São Paulo), Federal University of São Carlos, the Aeronautics Technology Institute (ITA) and the National Space Research Institute (INPE). Universities in the state of São Paulo have strong graduate programs: the University of São Paulo forms two thousand doctorates every year, the State University of Campinas forms eight hundred and the University of the State of São Paulo six hundred. -
Zootaxa, Herpetological Results of the 2002 Expedition to Sarisarinama, A
ZOOTAXA 1942 Herpetological results of the 2002 expedition to Sarisariñama, a tepui in Venezuelan Guayana, with the description of five new species CESAR L. BARRIO-AMOROS & CHARLES BREWER-CARIAS Magnolia Press Auckland, New Zealand Cesar L. Barrio-Amoros & Charles Brewer-Carias Herpetological results of the 2002 expedition to Sarisariñama, a tepui in Venezuelan Guayana, with the description of five new species (Zootaxa 1942) 68 pp.; 30 cm. 26 Nov. 2008 ISBN 978-1-86977-269-7 (paperback) ISBN 978-1-86977-270-3 (Online edition) FIRST PUBLISHED IN 2008 BY Magnolia Press P.O. Box 41-383 Auckland 1346 New Zealand e-mail: [email protected] http://www.mapress.com/zootaxa/ © 2008 Magnolia Press All rights reserved. No part of this publication may be reproduced, stored, transmitted or disseminated, in any form, or by any means, without prior written permission from the publisher, to whom all requests to reproduce copyright material should be directed in writing. This authorization does not extend to any other kind of copying, by any means, in any form, and for any purpose other than private research use. ISSN 1175-5326 (Print edition) ISSN 1175-5334 (Online edition) 2 · Zootaxa 1942 © 2008 Magnolia Press BARRIO-AMORÓS & BREWER-CARÍAS Zootaxa 1942: 1–68 (2008) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2008 · Magnolia Press ISSN 1175-5334 (online edition) Herpetological results of the 2002 expedition to Sarisariñama, a tepui in Venezuelan Guayana, with the description of five new species CÉSAR L. BARRIO-AMORÓS1 & CHARLES BREWER-CARÍAS2 1Fundación AndígenA, Apartado Postal 210, 5101-A Mérida, Venezuela. -
Bibliography and Scientific Name Index to Amphibians
lb BIBLIOGRAPHY AND SCIENTIFIC NAME INDEX TO AMPHIBIANS AND REPTILES IN THE PUBLICATIONS OF THE BIOLOGICAL SOCIETY OF WASHINGTON BULLETIN 1-8, 1918-1988 AND PROCEEDINGS 1-100, 1882-1987 fi pp ERNEST A. LINER Houma, Louisiana SMITHSONIAN HERPETOLOGICAL INFORMATION SERVICE NO. 92 1992 SMITHSONIAN HERPETOLOGICAL INFORMATION SERVICE The SHIS series publishes and distributes translations, bibliographies, indices, and similar items judged useful to individuals interested in the biology of amphibians and reptiles, but unlikely to be published in the normal technical journals. Single copies are distributed free to interested individuals. Libraries, herpetological associations, and research laboratories are invited to exchange their publications with the Division of Amphibians and Reptiles. We wish to encourage individuals to share their bibliographies, translations, etc. with other herpetologists through the SHIS series. If you have such items please contact George Zug for instructions on preparation and submission. Contributors receive 50 free copies. Please address all requests for copies and inquiries to George Zug, Division of Amphibians and Reptiles, National Museum of Natural History, Smithsonian Institution, Washington DC 20560 USA. Please include a self-addressed mailing label with requests. INTRODUCTION The present alphabetical listing by author (s) covers all papers bearing on herpetology that have appeared in Volume 1-100, 1882-1987, of the Proceedings of the Biological Society of Washington and the four numbers of the Bulletin series concerning reference to amphibians and reptiles. From Volume 1 through 82 (in part) , the articles were issued as separates with only the volume number, page numbers and year printed on each. Articles in Volume 82 (in part) through 89 were issued with volume number, article number, page numbers and year. -
Integrative and Comparative Biology Integrative and Comparative Biology, Volume 60, Number 1, Pp
Integrative and Comparative Biology Integrative and Comparative Biology, volume 60, number 1, pp. 190–201 doi:10.1093/icb/icaa015 Society for Integrative and Comparative Biology SYMPOSIUM Convergent Evolution of Elongate Forms in Craniates and of Locomotion in Elongate Squamate Reptiles Downloaded from https://academic.oup.com/icb/article-abstract/60/1/190/5813730 by Clark University user on 24 July 2020 Philip J. Bergmann ,* Sara D. W. Mann,* Gen Morinaga,1,*,† Elyse S. Freitas‡ and Cameron D. Siler‡ *Department of Biology, Clark University, Worcester, MA, USA; †Department of Integrative Biology, Oklahoma State University, Stillwater, OK, USA; ‡Department of Biology and Sam Noble Oklahoma Museum of Natural History, University of Oklahoma, Norman, OK, USA From the symposium “Long Limbless Locomotors: The Mechanics and Biology of Elongate, Limbless Vertebrate Locomotion” presented at the annual meeting of the Society for Integrative and Comparative Biology January 3–7, 2020 at Austin, Texas. 1E-mail: [email protected] Synopsis Elongate, snake- or eel-like, body forms have evolved convergently many times in most major lineages of vertebrates. Despite studies of various clades with elongate species, we still lack an understanding of their evolutionary dynamics and distribution on the vertebrate tree of life. We also do not know whether this convergence in body form coincides with convergence at other biological levels. Here, we present the first craniate-wide analysis of how many times elongate body forms have evolved, as well as rates of its evolution and reversion to a non-elongate form. We then focus on five convergently elongate squamate species and test if they converged in vertebral number and shape, as well as their locomotor performance and kinematics. -
Literature Cited in Lizards Natural History Database
Literature Cited in Lizards Natural History database Abdala, C. S., A. S. Quinteros, and R. E. Espinoza. 2008. Two new species of Liolaemus (Iguania: Liolaemidae) from the puna of northwestern Argentina. Herpetologica 64:458-471. Abdala, C. S., D. Baldo, R. A. Juárez, and R. E. Espinoza. 2016. The first parthenogenetic pleurodont Iguanian: a new all-female Liolaemus (Squamata: Liolaemidae) from western Argentina. Copeia 104:487-497. Abdala, C. S., J. C. Acosta, M. R. Cabrera, H. J. Villaviciencio, and J. Marinero. 2009. A new Andean Liolaemus of the L. montanus series (Squamata: Iguania: Liolaemidae) from western Argentina. South American Journal of Herpetology 4:91-102. Abdala, C. S., J. L. Acosta, J. C. Acosta, B. B. Alvarez, F. Arias, L. J. Avila, . S. M. Zalba. 2012. Categorización del estado de conservación de las lagartijas y anfisbenas de la República Argentina. Cuadernos de Herpetologia 26 (Suppl. 1):215-248. Abell, A. J. 1999. Male-female spacing patterns in the lizard, Sceloporus virgatus. Amphibia-Reptilia 20:185-194. Abts, M. L. 1987. Environment and variation in life history traits of the Chuckwalla, Sauromalus obesus. Ecological Monographs 57:215-232. Achaval, F., and A. Olmos. 2003. Anfibios y reptiles del Uruguay. Montevideo, Uruguay: Facultad de Ciencias. Achaval, F., and A. Olmos. 2007. Anfibio y reptiles del Uruguay, 3rd edn. Montevideo, Uruguay: Serie Fauna 1. Ackermann, T. 2006. Schreibers Glatkopfleguan Leiocephalus schreibersii. Munich, Germany: Natur und Tier. Ackley, J. W., P. J. Muelleman, R. E. Carter, R. W. Henderson, and R. Powell. 2009. A rapid assessment of herpetofaunal diversity in variously altered habitats on Dominica. -
Evolution of Limblessness
Evolution of Limblessness Evolution of Limblessness Early on in life, many people learn that lizards have four limbs whereas snakes have none. This dichotomy not only is inaccurate but also hides an exciting story of repeated evolution that is only now beginning to be understood. In fact, snakes represent only one of many natural evolutionary experiments in lizard limblessness. A similar story is also played out, though to a much smaller extent, in amphibians. The repeated evolution of snakelike tetrapods is one of the most striking examples of parallel evolution in animals. This entry discusses the evolution of limblessness in both reptiles and amphibians, with an emphasis on the living reptiles. Reptiles Based on current evidence (Wiens, Brandley, and Reeder 2006), an elongate, limb-reduced, snakelike morphology has evolved at least twenty-five times in squamates (the group containing lizards and snakes), with snakes representing only one such origin. These origins are scattered across the evolutionary tree of squamates, but they seem especially frequent in certain families. In particular, the skinks (Scincidae) contain at least half of all known origins of snakelike squamates. But many more origins within the skink family will likely be revealed as the branches of their evolutionary tree are fully resolved, given that many genera contain a range of body forms (from fully limbed to limbless) and may include multiple origins of snakelike morphology as yet unknown. These multiple origins of snakelike morphology are superficially similar in having reduced limbs and an elongate body form, but many are surprisingly different in their ecology and morphology. This multitude of snakelike lineages can be divided into two ecomorphs (a are surprisingly different in their ecology and morphology. -
Avila-Peres & H
ZM-73 (12) (Avila-Peres & H) 11-01-2007 10:54 Page 209 On two new species of Pseudogonatodes Ruthven, 1915 (Reptilia: Squamata: Gekkonidae), with remarks on the distribution of some other sphaerodactyl lizards T.C.S. Avila-Pires & M.S. Hoogmoed Avila-Pires, T.C.S. & M.S. Hoogmoed. On two new species of Pseudogonatodes Ruthven, 1915 (Reptilia: Squamata: Gekkonidae), with remarks on the distribution of some other sphaerodactyl lizards. Zool. Med. Leiden 73 (12), 6.iii.2000: 209-223, figs 1-6.— ISSN 0024-0672. Teresa C.S. Avila-Pires & Marinus S. Hoogmoed, Nationaal Natuurhistorisch Museum, Postbus 9517, 2300 RA Leiden, The Netherlands. Key words: Coleodactylus; Gonatodes; Lepidoblepharis; Pseudogonatodes; Reptilia; Squamata; lizards; new species; new record; Brazil; Venezuela; geographic distribution; Amazonian rainforest; cloud forest. Two new species of Pseudogonatodes Ruthven, 1915, are described, one from the Rio Juruá Basin, in the state of Acre, Brazil (Amazonian rainforest), the other from Rancho Grande, in the state Aragua, Venezuela (cloud forest). Both have granular dorsals and relatively numerous fourth toe lamellae, of which the third (from tip to base of toe) is not distinctly larger than the two distal ones. The species from the Rio Juruá is small, with dark belly, and recognised, among other characteristics, by its tall, conical to flat-conical dorsals. That from Rancho Grande is relatively large, with low number of ven- trals, and mental with a straight or convex posterior segment medially, among other distinctive char- acteristics. Some remarks on the geographic distribution of sphaerodactyl lizards in South America are presented, including a new record for Coleodactylus meridionalis. -
Reptilia, Squamata, Gymnophthalmidae, Potamites Erythrocularis Chávez & Catenazzi, 2014: Distribution Extension
Herpetology Notes, volume 8: 625-628 (2015) (published online on 20 December 2015) Reptilia, Squamata, Gymnophthalmidae, Potamites erythrocularis Chávez & Catenazzi, 2014: Distribution extension Juan C. Chávez-Arribasplata1,*, Vilma Duran2, and Germán Chávez3 The neotropical family Gymnophthalmidae Merrem, individuals of Potamites erythrocularis were recorded, 1820 comprises 36 genera that occur from Mexico representing the first record outside of the localities to Argentina (Goicoechea et al., 2012). This highly where the type series was collected. diversified family includes the semi-aquatic lizard A young female of Potamites erythrocularis (CORBIDI genus Potamites Doan & Castoe, 2005, which currently 13548) was found at El Parador, Inambari, 8.64 Km SE comprises eight species distributed from western Costa of Puerto Carlos (S 12.9699, W 70.2323; 266m) at 21:30 Rica and Panama to the Amazonian forests of Bolivia on 30 September 2013 by José Malqui and Germán (Chávez and Catenazzi, 2014). Likewise, with five Chávez. It was catched in the leaf-litter alongside a slow species Peru is the country with the highest diversity flowing stream 2-2.5 m in width. The stream drained a within this genus: P. flavogularis Altamirano-Benavides, closed canopy primary forest with riparian vegetation Zaher, Lobo, Grazziotin, Sales Nunes and Rodrigues, of ferns, lichens, plants of the family Heliconaceae and 2013; P. ecpleopus Cope 1876, P. montanicola Chavez Asteraceae and trees of the family Fabaceae. An adult y Vasquez, 2012; P. strangulatus Cope, 1868; and P. male (CORBIDI 15152) was also found at the locality erythrocularis Chavez and Catenazzi, 2014. Most of of El Parador (S 12.9804, W 70.2362; 253m) at 00:32 them are distributed in the Amazonian lowlands (Doan on 5 November 2014 by Juan C.