Discovery of an Additional Piece of the Large Gymnophthalmid Puzzle: A
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Modeling and Partitioning the Nucleotide Evolutionary Process for Phylogenetic and Comparative Genomic Inference
University of Central Florida STARS Electronic Theses and Dissertations, 2004-2019 2007 Modeling And Partitioning The Nucleotide Evolutionary Process For Phylogenetic And Comparative Genomic Inference Todd Castoe University of Central Florida Part of the Biology Commons Find similar works at: https://stars.library.ucf.edu/etd University of Central Florida Libraries http://library.ucf.edu This Doctoral Dissertation (Open Access) is brought to you for free and open access by STARS. It has been accepted for inclusion in Electronic Theses and Dissertations, 2004-2019 by an authorized administrator of STARS. For more information, please contact [email protected]. STARS Citation Castoe, Todd, "Modeling And Partitioning The Nucleotide Evolutionary Process For Phylogenetic And Comparative Genomic Inference" (2007). Electronic Theses and Dissertations, 2004-2019. 3111. https://stars.library.ucf.edu/etd/3111 MODELING AND PARTITIONING THE NUCLEOTIDE EVOLUTIONARY PROCESS FOR PHYLOGENETIC AND COMPARATIVE GENOMIC INFERENCE by TODD A. CASTOE B.S. SUNY – College of Environmental Science and Forestry, 1999 M.S. The University of Texas at Arlington, 2001 A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biomolecular Sciences in the Burnett College of Biomedical Sciences at the University of Central Florida Orlando, Florida Spring Term 2007 Major Professor: Christopher L. Parkinson © 2007 Todd A. Castoe ii ABSTRACT The transformation of genomic data into functionally relevant information about the composition of biological systems hinges critically on the field of computational genome biology, at the core of which lies comparative genomics. The aim of comparative genomics is to extract meaningful functional information from the differences and similarities observed across genomes of different organisms. -
Iii Pontificia Universidad Católica Del
III PONTIFICIA UNIVERSIDAD CATÓLICA DEL ECUADOR FACULTAD DE CIENCIAS EXACTAS Y NATURALES ESCUELA DE CIENCIAS BIOLÓGICAS Un método integrativo para evaluar el estado de conservación de las especies y su aplicación a los reptiles del Ecuador Tesis previa a la obtención del título de Magister en Biología de la Conservación CAROLINA DEL PILAR REYES PUIG Quito, 2015 IV CERTIFICACIÓN Certifico que la disertación de la Maestría en Biología de la Conservación de la candidata Carolina del Pilar Reyes Puig ha sido concluida de conformidad con las normas establecidas; por tanto, puede ser presentada para la calificación correspondiente. Dr. Omar Torres Carvajal Director de la Disertación Quito, Octubre del 2015 V AGRADECIMIENTOS A Omar Torres-Carvajal, curador de la División de Reptiles del Museo de Zoología de la Pontificia Universidad Católica del Ecuador (QCAZ), por su continua ayuda y contribución en todas las etapas de este estudio. A Andrés Merino-Viteri (QCAZ) por su valiosa ayuda en la generación de mapas de distribución potencial de reptiles del Ecuador. A Santiago Espinosa y Santiago Ron (QCAZ) por sus acertados comentarios y correcciones. A Ana Almendáriz por haber facilitado las localidades geográficas de presencia de ciertos reptiles del Ecuador de la base de datos de la Escuela Politécnica Nacional (EPN). A Mario Yánez-Muñoz de la División de Herpetología del Museo Ecuatoriano de Ciencias Naturales del Instituto Nacional de Biodiversidad (DHMECN-INB), por su ayuda y comentarios a la evaluación de ciertos reptiles del Ecuador. A Marcio Martins, Uri Roll, Fred Kraus, Shai Meiri, Peter Uetz y Omar Torres- Carvajal del Global Assessment of Reptile Distributions (GARD) por su colaboración y comentarios en las encuestas realizadas a expertos. -
The Chocó-Darién Conservation Corridor
July 4, 2011 The Chocó-Darién Conservation Corridor A Project Design Note for Validation to Climate, Community, and Biodiversity (CCB) Standards (2nd Edition). CCB Project Design Document – July 4, 2011 Executive Summary Colombia is home to over 10% of the world’s plant and animal species despite covering just 0.7% of the planet’s surface, and has more registered species of birds and amphibians than any other country in the world. Along Colombia’s northwest border with Panama lies the Darién region, one of the most diverse ecosystems of the American tropics, a recognized biodiversity hotspot, and home to two UNESCO Natural World Heritage sites. The spectacular rainforests of the Darien shelter populations of endangered species such as the jaguar, spider monkey, wild dog, and peregrine falcon, as well as numerous rare species that exist nowhere else on the planet. The Darién is also home to a diverse group of Afro-Colombian, indigenous, and mestizo communities who depend on these natural resources. On August 1, 2005, the Council of Afro-Colombian Communities of the Tolo River Basin (COCOMASUR) was awarded collective land title to over 13,465 hectares of rainforest in the Serranía del Darién in the municipality of Acandí, Chocó in recognition of their traditional lifestyles and longstanding presence in the region. If they are to preserve the forests and their traditional way of life, these communities must overcome considerable challenges. During 2001- 2010 alone, over 10% of the natural forest cover of the surrounding region was converted to pasture for cattle ranching or cleared to support unsustainable agricultural practices. -
Anfibios Y Reptiles 1 Keiner Meza-Tilvez1,2, Adolfo Mulet-Paso1,2 & Ronald Zambrano-Cantillo1 1Universidad De Cartagena & 2Fauna Silvestre Fundación
Fauna del Jardín Botánico “Guillermo Piñeres” de Cartagena, Turbaco, COLOMBIA Anfibios y Reptiles 1 Keiner Meza-Tilvez1,2, Adolfo Mulet-Paso1,2 & Ronald Zambrano-Cantillo1 1 2 Universidad de Cartagena & Fauna Silvestre Fundación Fotos: Adolfo Mulet Paso (AMP) – Hugo Claessen (HC) – Jairo H. Maldonado (JHM) – Jesús Torres Meza (JTM) – José Luis Pérez-González (JPG) – Jose Luna (JL) – Keiner Meza-Tilvez (KMT) – Luis Alberto Rueda Solano (LRS) – Mauricio Rivera Correa (MRC) – Juan Salvador Mendoza (JSM). © Jardín Botánico de Cartagena “Guillermo Piñeres” [[email protected]] Macho = (M), Hembra = (H) y Juvenil = (Juv.) [fieldguides.fieldmuseum.org] [1097] versión 1 12/2018 1 Rhinella horribilis 2 Rhinella humboldti 3 Dendrobates truncatus 4 Boana pugnax BUFONIDAE (foto KMT) BUFONIDAE (foto KMT) DENDROBATIDAE (foto KMT) HYLIDAE (foto KMT) 5 Boana xerophylla 6 Dendropsophus microcephalus 7 Scarthyla vigilans 8 Scinax rostratus HYLIDAE (foto LRS) HYLIDAE (foto KMT) HYLIDAE (foto KMT) HYLIDAE (foto KMT) 9 Scinax ruber 10 Trachycephalus typhonius 11 Engystomops pustulosus 12 Leptodactylus fragilis HYLIDAE (foto KMT) HYLIDAE (foto KMT) LEPTODACTYLIDAE (foto KMT) LEPTODACTYLIDAE (foto LRS) 13 Leptodactylus insularum 14 Pleurodema brachyops 15 Elachistocleis pearsei 16 Agalychnis callidryas LEPTODACTYLIDAE (foto AMP) LEPTODACTYLIDAE (foto KMT) MICROHYLIDAE (foto MRC) PHYLLOMEDUSIDAE (foto HC) 17 Phyllomedusa venusta 18 Basiliscus basiliscus (M) 19 Basiliscus basiliscus (Juv.) 20 Anolis auratus PHYLLOMEDUSIDAE (foto AMP) CORYTOPHANIDAE (foto KMT) CORYTOPHANIDAE (foto AMP) DACTYLOIDAE (foto AMP) Fauna del Jardín Botánico “Guillermo Piñeres” de Cartagena, Turbaco, COLOMBIA Anfibios y Reptiles 2 Keiner Meza-Tilvez1,2, Adolfo Mulet-Paso1,2 & Ronald Zambrano-Cantillo1 1 2 Universidad de Cartagena & Fauna Silvestre Fundación Fotos: Adolfo Mulet Paso (AMP) – Hugo Claessen (HC) – Jairo H. -
Supplemental Material Conservation Status of the Herpetofauna
Official journal website: Amphibian & Reptile Conservation amphibian-reptile-conservation.org 8(2) [Special Section]: 1–18; S1–S24 (e87). Supplemental Material Conservation status of the herpetofauna, protected areas, and current problems in Valle del Cauca, Colombia 1Alejandro Valencia-Zuleta, Andrés Felipe Jaramillo-Martínez, Andrea Echeverry-Bocanegra, Ron- ald Viáfara-Vega, Oscar Hernández-Córdoba, Victoria E. Cardona-Botero, Jaime Gutiérrez-Zúñiga, and Fernando Castro-Herrera Universidad del Valle, Grupo Laboratorio de Herpetología, Departamento de Biología, Cali, COLOMBIA Citation: Valencia-Zuleta A, Jaramillo-Martínez AF, Echeverry-Bocanegra A, Viáfara-Vega R, Hernández-Córdoba O, Cardona-Botero VE, Gutiérrez- Zúñiga J, Castro-Herrera F. 2014. Conservation status of the herpetofauna, protected areas, and current problems in Valle del Cauca, Colombia. Amphibian & Reptile Conservation 8(2) [Special Section]: 1–18; S1–S24 (e87). Copyright: © 2014 Valencia-Zuleta et al. This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCom- mercial-NoDerivatives 4.0 International License, which permits unrestricted use for non-commercial and education purposes only, in any medium, provided the original author and the official and authorized publication sources are recognized and properly credited. The official and authorized publication credit sources, which will be duly enforced, are as follows: official journal title Amphibian & Reptile Conservation; official journal website <amphibian-reptile-conservation.org>. Received: 12 March 2014; Accepted: 24 November 2014; Published: 19 December 2014 Table 1. Taxonomic list of amphibians and reptile of the department of Valle del Cauca (Cardona-B. et al. 2014). Actualization of threat categories based on: IUCN (red list), Red Book of Amphibians (Rueda et al. -
Zootaxa, Herpetological Results of the 2002 Expedition to Sarisarinama, A
ZOOTAXA 1942 Herpetological results of the 2002 expedition to Sarisariñama, a tepui in Venezuelan Guayana, with the description of five new species CESAR L. BARRIO-AMOROS & CHARLES BREWER-CARIAS Magnolia Press Auckland, New Zealand Cesar L. Barrio-Amoros & Charles Brewer-Carias Herpetological results of the 2002 expedition to Sarisariñama, a tepui in Venezuelan Guayana, with the description of five new species (Zootaxa 1942) 68 pp.; 30 cm. 26 Nov. 2008 ISBN 978-1-86977-269-7 (paperback) ISBN 978-1-86977-270-3 (Online edition) FIRST PUBLISHED IN 2008 BY Magnolia Press P.O. Box 41-383 Auckland 1346 New Zealand e-mail: [email protected] http://www.mapress.com/zootaxa/ © 2008 Magnolia Press All rights reserved. No part of this publication may be reproduced, stored, transmitted or disseminated, in any form, or by any means, without prior written permission from the publisher, to whom all requests to reproduce copyright material should be directed in writing. This authorization does not extend to any other kind of copying, by any means, in any form, and for any purpose other than private research use. ISSN 1175-5326 (Print edition) ISSN 1175-5334 (Online edition) 2 · Zootaxa 1942 © 2008 Magnolia Press BARRIO-AMORÓS & BREWER-CARÍAS Zootaxa 1942: 1–68 (2008) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2008 · Magnolia Press ISSN 1175-5334 (online edition) Herpetological results of the 2002 expedition to Sarisariñama, a tepui in Venezuelan Guayana, with the description of five new species CÉSAR L. BARRIO-AMORÓS1 & CHARLES BREWER-CARÍAS2 1Fundación AndígenA, Apartado Postal 210, 5101-A Mérida, Venezuela. -
Escuela Superior Politécnica De Chimborazo Facultad De Recursos Naturales Escuela De Ingeniería En Ecoturismo
ESCUELA SUPERIOR POLITÉCNICA DE CHIMBORAZO FACULTAD DE RECURSOS NATURALES ESCUELA DE INGENIERÍA EN ECOTURISMO DISEÑO DEL SENDERO INTERPRETATIVO “JUN JUN”, EN EL SECTOR DE QUEROCHACA, CANTÓN CEVALLOS, PROVINCIA DE TUNGURAHUA TRABAJO DE TITULACIÓN PROYECTO TÉCNICO PARA TITULACIÓN DE GRADO PRESENTADO COMO REQUISITO PARCIAL PARA OBTENER EL TÍTULO DE INGENIERA EN ECOTURISMO MARITZA ELIZABETH JARRÍN ALDÁS RIOBAMBA – ECUADOR 2018 i ©2018, Maritza Elizabeth Jarrín Aldás Se autoriza la reproducción total o parcial, con fines académicos, por cualquier medio o procedimiento, incluyendo la cita bibliográfica del documento, siempre y cuando se reconozca el Derecho de Autor. v DEDICATORIA Dedico este trabajo de titulación a mis padres Cleria y Rogerio, quienes con su amor incondicional, consejos, paciencia y gran sacrificio han sabido guiarme por este largo trayecto académico. A mis abuelitos Julio y Luz, porque han sido el pilar fundamental de mi vida y mi inspiración para cumplir mis sueños. A mis tíos y segundos padres, Nelson, Maricela, Jorge, Elsa y Dina quienes me han visto crecer y han estado en mis mejores y peores momentos y con sus palabras de aliento supieron darme la fuerza que necesitaba para seguir adelante. vi AGRADECIMIENTO La culminación de mi carrera universitaria y la realización de mi tesis no habrían sido posibles sin el apoyo incondicional de personas a quien quiero agradecer infinitamente: Primero a Dios por darme la fortaleza que necesitaba para empezar este largo camino y por bendecirme cada día de mi vida. A mi madre porque sin su esfuerzo no sería posible este triunfo. A mi familia por creer en mí y por estar siempre pendiente de este proceso estudiantil. -
Bibliography and Scientific Name Index to Amphibians
lb BIBLIOGRAPHY AND SCIENTIFIC NAME INDEX TO AMPHIBIANS AND REPTILES IN THE PUBLICATIONS OF THE BIOLOGICAL SOCIETY OF WASHINGTON BULLETIN 1-8, 1918-1988 AND PROCEEDINGS 1-100, 1882-1987 fi pp ERNEST A. LINER Houma, Louisiana SMITHSONIAN HERPETOLOGICAL INFORMATION SERVICE NO. 92 1992 SMITHSONIAN HERPETOLOGICAL INFORMATION SERVICE The SHIS series publishes and distributes translations, bibliographies, indices, and similar items judged useful to individuals interested in the biology of amphibians and reptiles, but unlikely to be published in the normal technical journals. Single copies are distributed free to interested individuals. Libraries, herpetological associations, and research laboratories are invited to exchange their publications with the Division of Amphibians and Reptiles. We wish to encourage individuals to share their bibliographies, translations, etc. with other herpetologists through the SHIS series. If you have such items please contact George Zug for instructions on preparation and submission. Contributors receive 50 free copies. Please address all requests for copies and inquiries to George Zug, Division of Amphibians and Reptiles, National Museum of Natural History, Smithsonian Institution, Washington DC 20560 USA. Please include a self-addressed mailing label with requests. INTRODUCTION The present alphabetical listing by author (s) covers all papers bearing on herpetology that have appeared in Volume 1-100, 1882-1987, of the Proceedings of the Biological Society of Washington and the four numbers of the Bulletin series concerning reference to amphibians and reptiles. From Volume 1 through 82 (in part) , the articles were issued as separates with only the volume number, page numbers and year printed on each. Articles in Volume 82 (in part) through 89 were issued with volume number, article number, page numbers and year. -
Bogotá - Colombia
ISSN 0370-3908 ISSN 2382-4980 (En linea) Academia Colombiana de Ciencias Exactas, Físicas y Naturales Vol. 40 • Número 156 • Págs. 375-542 · Julio - Septiembre de 2016 · Bogotá - Colombia Comité editorial Editora Elizabeth Castañeda, Ph. D. Instituto Nacional de Salud, Bogotá, Colombia Editores asociados Ciencias biomédicas María Elena Gómez, Doctor Luis Fernando García, M.D., M.Sc. Universidad del Valle, Cali, Colombia Universidad de Antioquia, Medellin, Colombia Gabriel Téllez, Ph. D. Felipe Guhl, M. Sc. Universidad de los Andes, Bogotá, Colombia Universidad de los Andes, Bogotá, Colombia Álvaro Luis Morales Aramburo, Ph. D. Leonardo Puerta Llerena, Ph. D. Universidad de Antioquia, Medellin, Colombia Universidad de Cartagena, Cartagena, Colombia Germán A. Pérez Alcázar, Ph. D. Gustavo Adolfo Vallejo, Ph. D. Universidad del Valle, Cali, Colombia Universidad del Tolima, Ibagué, Colombia Enrique Vera López, Dr. rer. nat. Luis Caraballo, M.D., M.Sc. Universidad Politécnica, Tunja, Colombia Universidad de Cartagena, Colombia Jairo Roa-Rojas, Ph. D. Eduardo Alberto Egea Bermejo, M.D., M.Sc. Universidad Nacional de Colombia, Universidad del Norte, Bogotá, Colombia Barranquilla, Colombia Rafael Baquero, Ph. D. Ciencias físicas Cinvestav, México Bernardo Gómez, Ph. D. Ángela Stella Camacho Beltrán, Dr. rer. nat. Departamento de Física, Departamento de Física, Universidad de los Andes, Bogotá, Colombia Universidad de los Andes, Bogotá, Colombia Rubén Antonio Vargas Zapata, Ph. D. Hernando Ariza Calderón, Doctor Universidad del Valle, Universidad del Quindío, Cali, Colombia Armenia, Colombia Pedro Fernández de Córdoba, Ph. D. Ciencias químicas Universidad Politécnica de Valencia, España Sonia Moreno Guaqueta, Ph. D. Diógenes Campos Romero, Dr. rer. nat. Universidad Nacional de Colombia, Universidad Nacional de Colombia, Bogotá, Colombia Bogotá, Colombia Fanor Mondragón, Ph. -
Literature Cited in Lizards Natural History Database
Literature Cited in Lizards Natural History database Abdala, C. S., A. S. Quinteros, and R. E. Espinoza. 2008. Two new species of Liolaemus (Iguania: Liolaemidae) from the puna of northwestern Argentina. Herpetologica 64:458-471. Abdala, C. S., D. Baldo, R. A. Juárez, and R. E. Espinoza. 2016. The first parthenogenetic pleurodont Iguanian: a new all-female Liolaemus (Squamata: Liolaemidae) from western Argentina. Copeia 104:487-497. Abdala, C. S., J. C. Acosta, M. R. Cabrera, H. J. Villaviciencio, and J. Marinero. 2009. A new Andean Liolaemus of the L. montanus series (Squamata: Iguania: Liolaemidae) from western Argentina. South American Journal of Herpetology 4:91-102. Abdala, C. S., J. L. Acosta, J. C. Acosta, B. B. Alvarez, F. Arias, L. J. Avila, . S. M. Zalba. 2012. Categorización del estado de conservación de las lagartijas y anfisbenas de la República Argentina. Cuadernos de Herpetologia 26 (Suppl. 1):215-248. Abell, A. J. 1999. Male-female spacing patterns in the lizard, Sceloporus virgatus. Amphibia-Reptilia 20:185-194. Abts, M. L. 1987. Environment and variation in life history traits of the Chuckwalla, Sauromalus obesus. Ecological Monographs 57:215-232. Achaval, F., and A. Olmos. 2003. Anfibios y reptiles del Uruguay. Montevideo, Uruguay: Facultad de Ciencias. Achaval, F., and A. Olmos. 2007. Anfibio y reptiles del Uruguay, 3rd edn. Montevideo, Uruguay: Serie Fauna 1. Ackermann, T. 2006. Schreibers Glatkopfleguan Leiocephalus schreibersii. Munich, Germany: Natur und Tier. Ackley, J. W., P. J. Muelleman, R. E. Carter, R. W. Henderson, and R. Powell. 2009. A rapid assessment of herpetofaunal diversity in variously altered habitats on Dominica. -
Redalyc.Comparative Studies of Supraocular Lepidosis in Squamata
Multequina ISSN: 0327-9375 [email protected] Instituto Argentino de Investigaciones de las Zonas Áridas Argentina Cei, José M. Comparative studies of supraocular lepidosis in squamata (reptilia) and its relationships with an evolutionary taxonomy Multequina, núm. 16, 2007, pp. 1-52 Instituto Argentino de Investigaciones de las Zonas Áridas Mendoza, Argentina Disponible en: http://www.redalyc.org/articulo.oa?id=42801601 Cómo citar el artículo Número completo Sistema de Información Científica Más información del artículo Red de Revistas Científicas de América Latina, el Caribe, España y Portugal Página de la revista en redalyc.org Proyecto académico sin fines de lucro, desarrollado bajo la iniciativa de acceso abierto ISSN 0327-9375 COMPARATIVE STUDIES OF SUPRAOCULAR LEPIDOSIS IN SQUAMATA (REPTILIA) AND ITS RELATIONSHIPS WITH AN EVOLUTIONARY TAXONOMY ESTUDIOS COMPARATIVOS DE LA LEPIDOSIS SUPRA-OCULAR EN SQUAMATA (REPTILIA) Y SU RELACIÓN CON LA TAXONOMÍA EVOLUCIONARIA JOSÉ M. CEI † las subfamilias Leiosaurinae y RESUMEN Enyaliinae. Siempre en Iguania Observaciones morfológicas Pleurodonta se evidencian ejemplos previas sobre un gran número de como los inconfundibles patrones de especies permiten establecer una escamas supraoculares de correspondencia entre la Opluridae, Leucocephalidae, peculiaridad de los patrones Polychrotidae, Tropiduridae. A nivel sistemáticos de las escamas específico la interdependencia en supraoculares de Squamata y la Iguanidae de los géneros Iguana, posición evolutiva de cada taxón Cercosaura, Brachylophus, -
Evolution of Limblessness
Evolution of Limblessness Evolution of Limblessness Early on in life, many people learn that lizards have four limbs whereas snakes have none. This dichotomy not only is inaccurate but also hides an exciting story of repeated evolution that is only now beginning to be understood. In fact, snakes represent only one of many natural evolutionary experiments in lizard limblessness. A similar story is also played out, though to a much smaller extent, in amphibians. The repeated evolution of snakelike tetrapods is one of the most striking examples of parallel evolution in animals. This entry discusses the evolution of limblessness in both reptiles and amphibians, with an emphasis on the living reptiles. Reptiles Based on current evidence (Wiens, Brandley, and Reeder 2006), an elongate, limb-reduced, snakelike morphology has evolved at least twenty-five times in squamates (the group containing lizards and snakes), with snakes representing only one such origin. These origins are scattered across the evolutionary tree of squamates, but they seem especially frequent in certain families. In particular, the skinks (Scincidae) contain at least half of all known origins of snakelike squamates. But many more origins within the skink family will likely be revealed as the branches of their evolutionary tree are fully resolved, given that many genera contain a range of body forms (from fully limbed to limbless) and may include multiple origins of snakelike morphology as yet unknown. These multiple origins of snakelike morphology are superficially similar in having reduced limbs and an elongate body form, but many are surprisingly different in their ecology and morphology. This multitude of snakelike lineages can be divided into two ecomorphs (a are surprisingly different in their ecology and morphology.