Promising Directions in the Selection of Peach, Apricot and Nectarine
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ENABLING MARKER-ASSISTED BREEDING (MAB) for BLUSH in PEACH [Prunus Persica (L.) Batsch] Terrence Frett Clemson University, [email protected]
Clemson University TigerPrints All Theses Theses 5-2012 ENABLING MARKER-ASSISTED BREEDING (MAB) FOR BLUSH IN PEACH [Prunus persica (L.) Batsch] Terrence Frett Clemson University, [email protected] Follow this and additional works at: https://tigerprints.clemson.edu/all_theses Part of the Plant Sciences Commons Recommended Citation Frett, Terrence, "ENABLING MARKER-ASSISTED BREEDING (MAB) FOR BLUSH IN PEACH [Prunus persica (L.) Batsch]" (2012). All Theses. 1301. https://tigerprints.clemson.edu/all_theses/1301 This Thesis is brought to you for free and open access by the Theses at TigerPrints. It has been accepted for inclusion in All Theses by an authorized administrator of TigerPrints. For more information, please contact [email protected]. ENABLING MARKER-ASSISTED BREEDING (MAB) FOR BLUSH IN PEACH [Prunus persica (L.) Batsch] A Thesis Presented to the Graduate School of Clemson University In Partial Fulfillment of the Requirements for the Degree Master of Science Horticulture by Terrence J. Frett May 2012 Committee Members: Dr. Ksenija Gasic, Committee Chair Dr. Gregory Reighard Dr. Desmond Layne Dr. Douglas Bielenberg ABSTRACT Phenotyping is a crucial component for using DNA-based tools in gene discovery and marker development. Phenotypic and genotypic data are essential for linking genetic variation with biological function, thus documenting gene function. However, phenotypic data gathering is not keeping pace with the immensely increasing amount of available genomic information, brought forth by current High Throughput technologies. Standardized phenotyping protocols for peach [Prunus persica (L.) Batsch] have been developed for 6 productivity traits (on the tree) and 16 fruit quality traits. Documentation of fruit quality phenotypes has been performed applying developed standardized phenotyping protocol in two seasons, at nine locations, on 513 peach and almond accessions, cultivars, advanced selections, lines, and or populations. -
Dictionary of Cultivated Plants and Their Regions of Diversity Second Edition Revised Of: A.C
Dictionary of cultivated plants and their regions of diversity Second edition revised of: A.C. Zeven and P.M. Zhukovsky, 1975, Dictionary of cultivated plants and their centres of diversity 'N -'\:K 1~ Li Dictionary of cultivated plants and their regions of diversity Excluding most ornamentals, forest trees and lower plants A.C. Zeven andJ.M.J, de Wet K pudoc Centre for Agricultural Publishing and Documentation Wageningen - 1982 ~T—^/-/- /+<>?- •/ CIP-GEGEVENS Zeven, A.C. Dictionary ofcultivate d plants andthei rregion so f diversity: excluding mostornamentals ,fores t treesan d lowerplant s/ A.C .Zeve n andJ.M.J ,d eWet .- Wageninge n : Pudoc. -11 1 Herz,uitg . van:Dictionar y of cultivatedplant s andthei r centreso fdiversit y /A.C .Zeve n andP.M . Zhukovsky, 1975.- Me t index,lit .opg . ISBN 90-220-0785-5 SISO63 2UD C63 3 Trefw.:plantenteelt . ISBN 90-220-0785-5 ©Centre forAgricultura l Publishing and Documentation, Wageningen,1982 . Nopar t of thisboo k mayb e reproduced andpublishe d in any form,b y print, photoprint,microfil m or any othermean swithou t written permission from thepublisher . Contents Preface 7 History of thewor k 8 Origins of agriculture anddomesticatio n ofplant s Cradles of agriculture and regions of diversity 21 1 Chinese-Japanese Region 32 2 Indochinese-IndonesianRegio n 48 3 Australian Region 65 4 Hindustani Region 70 5 Central AsianRegio n 81 6 NearEaster n Region 87 7 Mediterranean Region 103 8 African Region 121 9 European-Siberian Region 148 10 South American Region 164 11 CentralAmerica n andMexica n Region 185 12 NorthAmerica n Region 199 Specieswithou t an identified region 207 References 209 Indexo fbotanica l names 228 Preface The aimo f thiswor k ist ogiv e thereade r quick reference toth e regionso f diversity ofcultivate d plants.Fo r important crops,region so fdiversit y of related wild species areals opresented .Wil d species areofte nusefu l sources of genes to improve thevalu eo fcrops . -
Myzus Persicae (Sulzer) APHID”
Universidad de Talca FACULTAD DE CIENCIAS AGRARIAS UNIVERSIDAD DE TALCA - CHILE AND COMMUNAUTE FRANCAISE DE BELGIQUE ACADEMIE UNIVERSITAIRE WALLONIE-EUROPE UNIVERSITE DE LIEGE – GEMBLOUX AGRO-BIO TECH - BELGIQUE “DEFENSIVE RESPONSE OF COMMERCIAL VARIETIES OF Prunus persica L. TO THE ATTACK OF Myzus persicae (Sulzer) APHID” JAIME VERDUGO LEAL Thesis presented for obtaining the degree of Doctor en Ciencias Agrarias (U. de Talca) and Docteur en Sciences Agronomiques et Ingénierie Biologique (U. de Liège) Thesis Directors: Dr. Claudio Ramírez R. (U. de Talca - Chile) Dr. Frederic Francis (U. de Liège - Bélgica) TALCA – CHILE 2012 DIRECTOR OF PhD THESIS Thesis Director: Dr. Claudio C. Ramirez Thesis Director: Dr. Frederic Francis COMMITTEE OF EVALUATION: Dr. Eduardo Fuentes, Universidad de Talca PhD. Peter Caligari, Universidad de Talca Dr. Christian Figueroa, Universidad Austral de Chile Copyright. Under the Chilean and Belgium laws on copyright, only the author has the right to reproduce partially or completely the book in any way and manner whatsoever or to authorize the partial or complete reproduction in any manner in any form whatsoever. Photocopying or reproduction in another form is in violation of the said Act and subsequent amendments. Verdugo, J.A. (2011). Defensive response of commercial varieties of Prunus persica L. to the attack of Myzus persicae (Sulzer) aphid. (PhD Thesis). Facultad de Ciencias Agrarias – Universidad de Talca – Chile and Gembloux, Université de Liège – Gembloux Agro-Bio Tech, Belgium. Abstract Peaches and nectarines are among the most important fruit worldwide. Unfortunately, they are heavily attacked by the aphid M. persicae causing direct and indirect damages. In Chile, peaches and nectarines are also important fruit products. -
Chapter 14 Peach
Chapter 14 Peach David H. Byrne , Maria Bassols Raseira , Daniele Bassi , Maria Claudia Piagnani , Ksenija Gasic , Gregory L. Reighard , María Angeles Moreno , and Salvador Pérez Abstract The peach is the third most produced temperate tree fruit species behind apple and pear. This diploid species, Prunus persica , is naturally self-pollinating unlike most of the other cultivated Prunus species. Its center of diversity is in China, where it was domesticated. Starting about 3,000 years ago, the peach was moved from China to all temperate and subtropical climates within the Asian continent and then, more than 2,000 years ago, spread to Persia (present day Iran) via the Silk Road and from there throughout Europe. From Europe it was taken by the Spanish and Portuguese explorers to the Americas. It has an extensive history of breeding D. H. Byrne (*) Department of Horticultural Sciences , Texas A&M University , College Station , TX , USA e-mail: [email protected] M. B. Raseira EMBRAPA – Clima Temperado , BR 392 km 78 – Cx. , Postal 403 , Pelotas 96001-970 , RS , Brazil e-mail: [email protected] D. Bassi • M. C. Piagnani Dipartimento di Produzione Vegetale , Università degli Studi di Milano , Milan , Italy e-mail: [email protected] ; [email protected] K. Gasic • G. L. Reighard Department of Environmental Horticulture , Clemson University , Clemson , SC , USA e-mail: [email protected] ; [email protected] M. A. Moreno Estación Experimental de Aula Dei (CSIC) , Zaragoza , Spain e-mail: [email protected] S. Pérez Recursos Genéticos y Mejoramiento de Prunus, Guillermo Prieto 14 , Centro , Querétaro Qro. 76000 , Mexico e-mail: [email protected] M.L. -
187859223.Pdf
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by AIR Universita degli studi di Milano Chapter 14 Peach David H. Byrne , Maria Bassols Raseira , Daniele Bassi , Maria Claudia Piagnani , Ksenija Gasic , Gregory L. Reighard , María Angeles Moreno , and Salvador Pérez Abstract The peach is the third most produced temperate tree fruit species behind apple and pear. This diploid species, Prunus persica , is naturally self-pollinating unlike most of the other cultivated Prunus species. Its center of diversity is in China, where it was domesticated. Starting about 3,000 years ago, the peach was moved from China to all temperate and subtropical climates within the Asian continent and then, more than 2,000 years ago, spread to Persia (present day Iran) via the Silk Road and from there throughout Europe. From Europe it was taken by the Spanish and Portuguese explorers to the Americas. It has an extensive history of breeding D. H. Byrne (*) Department of Horticultural Sciences , Texas A&M University , College Station , TX , USA e-mail: [email protected] M. B. Raseira EMBRAPA – Clima Temperado , BR 392 km 78 – Cx. , Postal 403 , Pelotas 96001-970 , RS , Brazil e-mail: [email protected] D. Bassi • M. C. Piagnani Dipartimento di Produzione Vegetale , Università degli Studi di Milano , Milan , Italy e-mail: [email protected] ; [email protected] K. Gasic • G. L. Reighard Department of Environmental Horticulture , Clemson University , Clemson , SC , USA e-mail: [email protected] ; [email protected] M. A. Moreno Estación Experimental de Aula Dei (CSIC) , Zaragoza , Spain e-mail: [email protected] S. -
Genetic Relationships Among 10 Prunus Rootstock Species from China, Based on Simple Sequence Repeat Markers
J. AMER.SOC.HORT.SCI. 141(5):520–526. 2016. doi: 10.21273/JASHS03827-16 Genetic Relationships among 10 Prunus Rootstock Species from China, Based on Simple Sequence Repeat Markers Qijing Zhang and Dajun Gu1 Liaoning Institute of Pomology, Yingkou, Liaoning 115009, People’s Republic of China ADDITIONAL INDEX WORDS. microsatellite markers, banding patterns, phylogenetic analysis, subgenus classification, rootstock breeding ABSTRACT. To improve the efficiency of breeding programs for Prunus rootstock hybrids in China, we analyzed the subgenus status and relationship of 10 Chinese rootstock species, by using 24 sets of simple sequence repeat (SSR) primers. The SSR banding patterns and phylogenetic analysis indicated that subgenus Cerasus is more closely related to subgenus Prunophora than to subgenus Amygdalus, and that subgenus Lithocerasus is more closely related to subgenus Prunophora and subgenus Amygdalus than to subgenus Cerasus. In addition, Prunus triloba was more closely related to Prunus tomentosa than to the members of subgenus Amygdalus. Therefore, we suggest that P. tomentosa and P. triloba should be assigned to the same group, either to subgenus Lithocerasus or Prunophora, and we also propose potential parent combinations for future Prunus rootstock breeding. Prunus (Rosaceae) is a large genus with significant eco- peach, whereas Prunus salicina and Prunus sibirica can be nomic importance, since it includes a variety of popular stone used as a rootstock for cherry, plum, apricot, and peach. fruit species [e.g., peach (Prunus persica), apricot (Prunus Hybridization among Prunus species has been successful and armeniaca), almond (Prunus dulcis), and sweet cherry (Prunus has been taken up as an effective strategy for improving avium)]. -
Genetic Relationship of Ornamental Peach Determined Using AFLP
HORTSCIENCE 40(6):1782–1786. 2005. relationships for agronomic crops, fruit trees and ornamental plants, such as Cephalotaxus (Zhang et al., 2000), Dahlia (Debener, 2002), Genetic Relationship of Ornamental daylily (Tomkins et al., 2001), Dendranthema (Zhou and Dai, 2002), Dieffenbachia (Chen Peach Determined Using AFLP et al., 2004), Lagestroemia (Pooler, 2003), Philodendron (Devanand et al., 2004), plum Markers (Goulao et al., 2001), Prunus mume (Ming and Zhang, 2003), and sweet cherry (Struss Dongyan Hu and Zuoshuang Zhang et al., 2001, 2003; Tavaud et al., 2001; Zhou Beijing Botanical Garden, Wofosi Road, Beijing, 100093, China et al., 2002). Previous studies of fruiting peach cultivars Donglin Zhang1 (Aranzana et al., 2001, 2003; Dirlewanger et Landscape Horticulture, Department of Plant, Soil and Environmental Sciences, al., 1998; Manubens et al., 1999; Shimada et University of Maine, Orono, ME 04469-5722 al., 1998) have shown that AFLP technique produces a high degree of polymorphic mark- Qixiang Zhang ers per assay, which could provide an effi cient College of Landscape Horticulture, Beijing Forestry University, Beijing, system for detection and analysis of fruiting peach cultivars. 100083, China In this study, therefore, AFLP was applied Jianhua Li to estimate genetic relationships of ornamental peach taxa, providing insights into their clas- Arnold Arboretum of Harvard University, 125 Arborway, Jamaica Plain, sifi cation and further breeding. MA 02130 Additional index words. breeding, conservation, cultivar, DNA, identification. Materials and Methods Abstract. Ornamental peach (Prunus persica (L.) Batsch) is a popular plant for urban Plant materials. Fifty-one ornamental landscapes and gardens. However, the genetic relationship among ornamental peach peach taxa, which originated from P. -
(Rosaceae) Reveals the Phylogenetic Relationship and Divergence Time
Du et al. BMC Genomics (2021) 22:645 https://doi.org/10.1186/s12864-021-07968-6 RESEARCH Open Access The chloroplast genome of Amygdalus L. (Rosaceae) reveals the phylogenetic relationship and divergence time Zhongyu Du1,2†,KeLu1†, Kai Zhang1, Yiming He1, Haitao Wang1, Guaiqiang Chai1, Jianguo Shi1 and Yizhong Duan1* Abstract Background: Limited access to genetic information has greatly hindered our understanding of the molecular evolution, phylogeny, and differentiation time of subg. Amygdalus. This study reported complete chloroplast (cp) genome sequences of subg. Amygdalus, which further enriched the available valuable resources of complete cp genomes of higher plants and deepened our understanding of the divergence time and phylogenetic relationships of subg. Amygdalus. Results: The results showed that subg. Amygdalus species exhibited a tetrad structure with sizes ranging from 157,736 bp (P. kansuensis) to 158,971 bp (P. davidiana), a pair of inverted repeat regions (IRa/IRb) that ranged from 26,137–26,467 bp, a large single-copy region that ranged from 85,757–86,608 bp, and a small single-copy region that ranged from 19,020–19,133 bp. The average GC content of the complete cp genomes in the 12 species was 36.80%. We found that the structure of the subg. Amygdalus complete cp genomes was highly conserved, and the 12 subg. Amygdalus species had an rps19 pseudogene. There was not rearrangement of the complete cp genome in the 12 subg. Amygdalus species. All 12 subg. Amygdalus species clustered into one clade based on both Bayesian inference and maximum likelihood. The divergence time analyses based on the complete cp genome sequences showed that subg. -
Multiple Models for Rosaceae Genomics[OA]
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Digital.CSIC Genome Analysis Multiple Models for Rosaceae Genomics[OA] Vladimir Shulaev*, Schuyler S. Korban, Bryon Sosinski, Albert G. Abbott, Herb S. Aldwinckle, Kevin M. Folta, Amy Iezzoni, Dorrie Main, Pere Aru´ s, Abhaya M. Dandekar, Kim Lewers, Susan K. Brown, Thomas M. Davis, Susan E. Gardiner, Daniel Potter, and Richard E. Veilleux Virginia Bioinformatics Institute and Department of Horticulture, Virginia Polytechnic Institute and State University, Blacksburg, Virginia 24061 (V.S., R.E.V.); Department of Natural Resources and Environmental Sciences, University of Illinois, Urbana, Illinois 61801 (S.S.K.); Department of Horticultural Science, North Carolina State University, Raleigh, North Carolina 27695 (B.S.); Department of Genetics and Biochemistry, Clemson University, Clemson, South Carolina 29634 (A.G.A.); Department of Plant Pathology (H.S.A.), and New York State Agricultural Experiment Station, Department of Horticultural Sciences (S.K.B.), Cornell University, Geneva, New York 14456; Horticultural Sciences Department and Plant Molecular and Cellular Biology Program, Gainesville, Florida 32611 (K.M.F.); Department of Horticulture, Michigan State University, East Lansing, Michigan 48824 (A.I.); Department of Horticulture and Landscape Architecture, Washington State University, Pullman, Washington 99164 (D.M.); Institut de Recerca i Technologia Agroalimenta`ries (IRTA), Centre de Recerca en Agrigeno`mica (CSIC-IRTA-UAB), 08348 Cabrils, -
Screening Almond Rootstocks for Sources of Resistance to Armillaria Root Disease
HORTSCIENCE 53(1):4–8. 2018. https://doi.org/10.21273/HORTSCI12038-17 Unlike most root pathogens, which produce spores that lie dormant in the soil (e.g., Phytophthora), Armillaria persists in its veg- Screening Almond Rootstocks for etative stage—mycelium—within woody roots left in the soil after clearing infected Sources of Resistance to Armillaria trees (residual roots). We have recovered viable A. mellea mycelium from residual Root Disease roots, in orchard and vineyard soil, originat- ing from tree crops and forest trees 10+ years Kendra Baumgartner1 and Phillip Fujiyoshi after they were cleared (Baumgartner and U.S. Department of Agriculture, Agricultural Research Service, Crops Rizzo, 2002; Rizzo et al., 1998). Fumigants Pathology and Genetics Research Unit, Davis, CA 95616 such as methyl bromide are only effective to the extent that they reach and penetrate Craig Ledbetter residual roots (Bliss, 1951; Munnecke et al., U.S. Department of Agriculture, Agricultural Research Service, Crop 1981). Injection of the systemic fungicide propiconazole to living trees reduced symp- Diseases, Pests and Genetics Research Unit, Parlier, CA 93648 tom severity in almond on Lovell rootstock Roger Duncan (Adaskaveg et al., 1999), but this approach can be cumbersome for large disease centers. University of California Cooperative Extension, Stanislaus County, Modesto, Another approach to postinfection manage- CA 94358 ment is root collar excavation, although this approach must be carried out in advance of Daniel A. Kluepfel severe symptom development (Baumgartner, U.S. Department of Agriculture, Agricultural Research Service, Crops 2004; Schnabel et al., 2012). Pathology and Genetics Research Unit, Davis, CA 95616 A 10-year field trial in France of ungrafted Prunus rootstocks (Guillaumin et al., 1989) Additional index words. -
Peaches Preceded Humans: Fossil Evidence from SW China
www.nature.com/scientificreports OPEN Peaches Preceded Humans: Fossil Evidence from SW China Tao Su1,2, Peter Wilf3, Yongjiang Huang2,4, Shitao Zhang5 & Zhekun Zhou1,4 Received: 05 May 2015 Peach (Prunus persica, Rosaceae) is an extremely popular tree fruit worldwide, with an annual Accepted: 16 October 2015 production near 20 million tons. Peach is widely thought to have origins in China, but its evolutionary Published: 26 November 2015 history is largely unknown. The oldest evidence for the peach has been Chinese archaeological records dating to 8000–7000 BP. Here, we report eight fossil peach endocarps from late Pliocene strata of Kunming City, Yunnan, southwestern China. The fossils are identical to modern peach endocarps, including size comparable to smaller modern varieties, a single seed, a deep dorsal groove, and presence of deep pits and furrows. These fossils show that China has been a critical region for peach evolution since long before human presence, much less agriculture. Peaches evolved their modern morphology under natural selection, presumably involving large, frugivorous mammals such as primates. Much later, peach size and variety increased through domestication and breeding. Peach (Prunus persica, Rosaceae) is a universally known tree fruit with an annual production near 20 million tons1; it is also a genetic model organism2. China has a long history of peach cultivation known from both historical and archaeological evidence3,4. The word peach (“ ”) has long appeared in Chinese literature, e.g., the books Shi-Jing (1,100–600 BC) and Shi-Ji (1st century BC)3. Despite the significant fossil record of Rosaceae and the genus Prunus5–15, the origins of the peach and its unique features remain unknown. -
The High-Quality Draft Genome of Peach (Prunus Persica)
ARTICLES OPEN The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution The International Peach Genome Initiative* Rosaceae is the most important fruit-producing clade, and its key commercially relevant genera (Fragaria, Rosa, Rubus and Prunus) show broadly diverse growth habits, fruit types and compact diploid genomes. Peach, a diploid Prunus species, is one of the best genetically characterized deciduous trees. Here we describe the high-quality genome sequence of peach obtained from a completely homozygous genotype. We obtained a complete chromosome-scale assembly using Sanger whole-genome shotgun methods. We predicted 27,852 protein-coding genes, as well as noncoding RNAs. We investigated the path of peach domestication through whole-genome resequencing of 14 Prunus accessions. The analyses suggest major genetic bottlenecks that have substantially shaped peach genome diversity. Furthermore, comparative analyses showed that peach has not undergone recent whole-genome duplication, and even though the ancestral triplicated blocks in peach are fragmentary compared to those All rights reserved. in grape, all seven paleosets of paralogs from the putative paleoancestor are detectable. Rosaceae includes species grown for their fruits (for example, peaches, RESULTS apples and strawberries), lumber (black cherry) and ornamental value Sequencing, assembly and map integration (roses). The family encompasses a wide variety of fruit types (pomes, We report here the high-quality whole-genome shotgun assembly of America, Inc. drupes, achenes, hips, follicles and capsules) and plant growth habits a double haploid genotype of the peach cv. Lovell (PLov2-2N; 2n = (ranging from herbaceous to cane, bush and tree forms).