The Families and Genera of Vascular Plants
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Toward a Resolution of Campanulid Phylogeny, with Special Reference to the Placement of Dipsacales
TAXON 57 (1) • February 2008: 53–65 Winkworth & al. • Campanulid phylogeny MOLECULAR PHYLOGENETICS Toward a resolution of Campanulid phylogeny, with special reference to the placement of Dipsacales Richard C. Winkworth1,2, Johannes Lundberg3 & Michael J. Donoghue4 1 Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, Caixa Postal 11461–CEP 05422-970, São Paulo, SP, Brazil. [email protected] (author for correspondence) 2 Current address: School of Biology, Chemistry, and Environmental Sciences, University of the South Pacific, Private Bag, Laucala Campus, Suva, Fiji 3 Department of Phanerogamic Botany, The Swedish Museum of Natural History, Box 50007, 104 05 Stockholm, Sweden 4 Department of Ecology & Evolutionary Biology and Peabody Museum of Natural History, Yale University, P.O. Box 208106, New Haven, Connecticut 06520-8106, U.S.A. Broad-scale phylogenetic analyses of the angiosperms and of the Asteridae have failed to confidently resolve relationships among the major lineages of the campanulid Asteridae (i.e., the euasterid II of APG II, 2003). To address this problem we assembled presently available sequences for a core set of 50 taxa, representing the diver- sity of the four largest lineages (Apiales, Aquifoliales, Asterales, Dipsacales) as well as the smaller “unplaced” groups (e.g., Bruniaceae, Paracryphiaceae, Columelliaceae). We constructed four data matrices for phylogenetic analysis: a chloroplast coding matrix (atpB, matK, ndhF, rbcL), a chloroplast non-coding matrix (rps16 intron, trnT-F region, trnV-atpE IGS), a combined chloroplast dataset (all seven chloroplast regions), and a combined genome matrix (seven chloroplast regions plus 18S and 26S rDNA). Bayesian analyses of these datasets using mixed substitution models produced often well-resolved and supported trees. -
Heptacodium Miconioides
photograph © Peter Del Tredici, Arnold Arboretum of Harvard University An old multi-stemmed specimen of Heptacodium miconioides growing in woodland on Tian Tai Shan, Zhejiang, September 2004, probably the first wild plant ofHeptacodium to be seen by a Western botanist since its discovery by Ernest Wilson in 1907. Heptacodium miconioides Rehder In his last ‘Tree of the Year’, JOHN GRIMSHAW discusses what distinguishes a shrub from a tree and writes about a large shrub introduced to cultivation first in the early twentieth century and again in the late twentieth century, that is rare in the wild. Introduction When the terms of reference for New Trees were drawn up (see pp. 1-2), having agreed that the book would contain only trees, we had to address the deceptive question ‘what is a tree?’ Most of us ‘can recognise a tree when we see one’ and in many ways this is as good an answer as one needs, but when is a woody plant not a tree? When it’s a shrub, of course – but what is a shrub? In the end we adopted the simple definitions that a tree ‘normally [has] a single stem reaching or exceeding 5 m in height, at least in its native habitat. A shrub would normally have multiple woody stems emerging from the base or close to the ground, and would seldom exceed 5 m in height’ (Grimshaw & Bayton 2009). In most cases this served to make a clear distinction, but one of the casualties that fell between the two stools was the Chinese plant Heptacodium miconioides, a significant recent introduction described by theFlora of China (Yang et al. -
Plastid Phylogenomic Insights Into the Evolution of the Caprifoliaceae S.L. (Dipsacales)
Molecular Phylogenetics and Evolution 142 (2020) 106641 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Plastid phylogenomic insights into the evolution of the Caprifoliaceae s.l. T (Dipsacales) Hong-Xin Wanga,1, Huan Liub,c,1, Michael J. Moored, Sven Landreine, Bing Liuf,g, Zhi-Xin Zhua, ⁎ Hua-Feng Wanga, a Key Laboratory of Tropical Biological Resources of Ministry of Education, School of Life and Pharmaceutical Sciences, Hainan University, Haikou 570228, China b BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China c State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen 518083, China d Department of Biology, Oberlin College, Oberlin, OH 44074, USA e Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun, 666303, China f State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Science, Beijing 100093, China g Sino-African Joint Research Centre, Chinese Academy of Science, Wuhan 430074, China ARTICLE INFO ABSTRACT Keywords: The family Caprifoliaceae s.l. is an asterid angiosperm clade of ca. 960 species, most of which are distributed in Caprifoliaceae s.l. temperate regions of the northern hemisphere. Recent studies show that the family comprises seven major Dipsacales clades: Linnaeoideae, Zabelia, Morinoideae, Dipsacoideae, Valerianoideae, Caprifolioideae, and Diervilloideae. Plastome However, its phylogeny at the subfamily or genus level remains controversial, and the backbone relationships Phylogenetics among subfamilies are incompletely resolved. In this study, we utilized complete plastome sequencing to resolve the relationships among the subfamilies of the Caprifoliaceae s.l. and clarify several long-standing controversies. We generated and analyzed plastomes of 48 accessions of Caprifoliaceae s.l., representing 44 species, six sub- families and one genus. -
Phylogeny and Phylogenetic Taxonomy of Dipsacales, with Special Reference to Sinadoxa and Tetradoxa (Adoxaceae)
PHYLOGENY AND PHYLOGENETIC TAXONOMY OF DIPSACALES, WITH SPECIAL REFERENCE TO SINADOXA AND TETRADOXA (ADOXACEAE) MICHAEL J. DONOGHUE,1 TORSTEN ERIKSSON,2 PATRICK A. REEVES,3 AND RICHARD G. OLMSTEAD 3 Abstract. To further clarify phylogenetic relationships within Dipsacales,we analyzed new and previously pub- lished rbcL sequences, alone and in combination with morphological data. We also examined relationships within Adoxaceae using rbcL and nuclear ribosomal internal transcribed spacer (ITS) sequences. We conclude from these analyses that Dipsacales comprise two major lineages:Adoxaceae and Caprifoliaceae (sensu Judd et al.,1994), which both contain elements of traditional Caprifoliaceae.Within Adoxaceae, the following relation- ships are strongly supported: (Viburnum (Sambucus (Sinadoxa (Tetradoxa, Adoxa)))). Combined analyses of C ap ri foliaceae yield the fo l l ow i n g : ( C ap ri folieae (Diervilleae (Linnaeeae (Morinaceae (Dipsacaceae (Triplostegia,Valerianaceae)))))). On the basis of these results we provide phylogenetic definitions for the names of several major clades. Within Adoxaceae, Adoxina refers to the clade including Sinadoxa, Tetradoxa, and Adoxa.This lineage is marked by herbaceous habit, reduction in the number of perianth parts,nectaries of mul- ticellular hairs on the perianth,and bifid stamens. The clade including Morinaceae,Valerianaceae, Triplostegia, and Dipsacaceae is here named Valerina. Probable synapomorphies include herbaceousness,presence of an epi- calyx (lost or modified in Valerianaceae), reduced endosperm,and distinctive chemistry, including production of monoterpenoids. The clade containing Valerina plus Linnaeeae we name Linnina. This lineage is distinguished by reduction to four (or fewer) stamens, by abortion of two of the three carpels,and possibly by supernumerary inflorescences bracts. Keywords: Adoxaceae, Caprifoliaceae, Dipsacales, ITS, morphological characters, phylogeny, phylogenetic taxonomy, phylogenetic nomenclature, rbcL, Sinadoxa, Tetradoxa. -
Classification of Convolvulaceae: a Phylogenetic Approach
Systematic Botany (2003), 28(4): pp. 791±806 q Copyright 2003 by the American Society of Plant Taxonomists Classi®cation of Convolvulaceae: A Phylogenetic Approach SASÏA STEFANOVICÂ ,1,3 DANIEL F. A USTIN,2 and RICHARD G. OLMSTEAD1 1Department of Botany, University of Washington, Box 355325, Seattle, Washington 98195-5325; 2Conservation and Science Department, Sonora Desert Museum, 2021 N Kinney Road, Tucson, Arizona 85743; 3Author for correspondence, present address: Department of Biology, Indiana University, 1001 E. Third Street, Bloomington, Indiana, 47405 ([email protected]) Communicating Editor: Paul S. Manos ABSTRACT. Because recent molecular studies, based on multiple data sets from all three plant genomes, have indicated mutually congruent, well-resolved, and well-supported relationships within Convolvulaceae (the morning-glory family), a formal reclassi®cation of this family is presented here. Convolvulaceae, a large family of worldwide distribution, exhibiting a rich diversity of morphological characteristics and ecological habitats, are now circumscribed within twelve tribes. A key to these tribes of Convolvulaceae is offered. The group of spiny-pollen bearing Convolvulaceae (forming ``Echinoconiae'') and tribe Cuscuteae are retained essentially in their traditional sense, Cresseae are circumscribed with only minor modi®- cations, Convolvuleae and Erycibeae are recognized in a restricted sense, while Dichondreae and Maripeae are expanded. Also, to produce a tribal taxonomy that better re¯ects phylogenetic relationships, the concept of Poraneae is abandoned as arti®cial, three new tribes are recognized (Aniseieae, Cardiochlamyeae, and Jacquemontieae), and a new tribal status is proposed for the Malagasy endemic Humbertia (Humbertieae). ``Merremieae'' are tentatively retained even though the mono- phyly of this tribe is not certain. -
Tratamiento Taxonómico Del Género Dendrobangia Rusby (Cardiopteridaceae O Icacinaceae)
Tratamiento taxonómico del género Dendrobangia Rusby (Cardiopteridaceae o Icacinaceae) Rodrigo Duno de Stefano Abstract Résumé DUNO DE STEFANO, R. (2007). Taxonomical treatment of the genus Den- DUNO DE STEFANO, R. (2007).Traitement taxonomique du genre Dendro- drobangia Rusby (Cardiopteridaceae or Icacinaceae). Candollea 62: 91-103. bangia Rusby (Cardiopteridaceae ou Icacinaceae). Candollea 62: 91-103. In Spanish, French and English abstracts. En espagnol, résumé français et anglais. The taxonomic treatment of the genus Dendrobangia Rusby Le traitement taxonomique du genre Dendrobangia Rusby is presented for Neotropics, the taxonomic position of this genus est présenté pour les Néotropiques, sa position sytématique being no yet resolved (Cardiopteridaceae or Icacinaceae). n’étant pas encore résolue (Cardiopteridaceae ou Icacinaceae). Dendrobangia includes two species: Dendrobangia boliviana Dendrobangia comprend deux espèces: Dendrobangia boli- Rusby and Dendrobangia multinerva Ducke. A lecto type is viana Rusby et Dendrobangia multinerva Ducke. Un lectotype designated for Dendrobangia boliviana. The genus is present est choisi pour Dendrobangia boliviana. Le genre est présent from Costa Rica to Brazil and Bolivia. du Costa Rica jusqu’au Brésil et à la Bolivie. Key-Words CARDIOPTERIDACEAE – ICACINACEAE – Dendrobangia – Neotropics – Taxonomy Dirección del autor: Herbario CICY, Centro de Investigación Científica de Yucatán A. C. (CICY), Calle 43. No. 130. Col. Chuburná de Hidalgo, 97200 Mérida, Yucatán, México A. P. 87, Cordemex, Mérida 97200, Yucatán, México. Email: [email protected] Recibido el 7 Noviembre 2006. Aceptado el 19 Abril 2007. ISSN: 0373-2967 Candollea 62(1): 91-103 (2007) © CONSERVATOIRE ET JARDIN BOTANIQUES DE GENÈVE 2007 92 – Candollea 62, 2007 Introducción (DUCKE, 1943) y D. tenuis Ducke (DUCKE, 1945). -
Floristic Inventory of One Hectare of Palm-Dominated Creek Forest in Jenaro Herrera, Peru
E D I N B U R G H J O U R N A L O F B O T A N Y 69 (2): 259–280 (2012) 259 Ó Trustees of the Royal Botanic Garden Edinburgh (2012) doi:10.1017/S0960428612000030 FLORISTIC INVENTORY OF ONE HECTARE OF PALM-DOMINATED CREEK FOREST IN JENARO HERRERA, PERU R. M. PRICKETT1 , 2 ,E.N.HONORIO C.3 ,Y.BABA1 ,H.M.BADEN1 , C. M. ALVEZ V.2 &C.A.QUESADA4 A floristic inventory was carried out in an area of palm-dominated creek forest in Jenaro Herrera, in the northeast of Peru. All trees $ 10 cm dbh were surveyed in a one-hectare permanent plot using the standard RAINFOR methodology. There were 618 individuals belonging to 230 species, 106 genera and 43 families. The results showed that the total basal area of the trees in the plot was 23.7 m2. The three species with the highest importance value indexes were Iriartea deltoidea Ruiz & Pav., Oenocarpus bataua Mart. (Arecaceae) and Carapa procera DC. (Meliaceae). The five most dominant families in order of importance were Arecaceae, Fabaceae, Meliaceae, Euphorbiaceae and Sapotaceae. Although the soil of this plot was poorly drained, the number of trees and the diversity of the plot were typical for terra firme forest in the western Amazon. Keywords. Amazonia, diversity, floristic composition, permanent sample plot, terra firme forest. Introduction The neotropical Amazon rainforest covers 757 million hectares in total (Eden, 1990). This rainforest is a rich, heterogeneous patchwork of distinct forest types, and its floristic variability is affected by a combination of climatic, edaphic and ecological variables (Gentry, 1988; Pitman et al., 2001; Vormisto, 2002; ter Steege et al., 2003; Macı¤a & Svenning, 2005; Haugaasen & Peres, 2006; Honorio et al., 2009). -
Duplications and Expression of DIVARICATA-Like Genes in Dipsacales
Duplications and Expression of DIVARICATA-Like Genes in Dipsacales Dianella G. Howarth* and Michael J. Donoghue *Department of Biological Sciences, St. John’s University, Queens, NY; and Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT The genetics underlying flower symmetry shifts between radial and bilateral symmetry has been intensively studied in the model Antirrhinum majus. Understanding the conservation or diversification of this genetic pathway in other plants is of special interest in understanding angiosperm evolution and ecology. Evidence from Antirrhinum indicates that TCP and MYB transcription factors, especially CYCLOIDEA (CYC), DICHOTOMA (DICH), DIVARICATA (DIV), and RADIALIS (RAD) play a role in specifying dorsal identity (CYC, DICH, and RAD) and ventral identity (DIV) in the corolla and androecium of monosymmetric (bilateral) flowers. Previous data indicate that the ECE clade of TCP genes (including CYC and DICH) underwent two duplication events around the diversification of the core eudicots. In this study, we examined the duplication events within Dipsacales, which contains both radially and bilaterally symmetrical flowered species. Additionally, we report here the phylogenetic relationships of the DIV-like genes across core eudicots. Like TCP genes, we found three core eudicot clades of DIV-like genes, with duplications occurring around the diversification of the core eudicots, which we name DIV1, DIV2, and DIV3. The Antirrhinum genes, DIVARICATA and its sister DVL1, fall into the DIV1 clade. We also found additional duplications within these clades in Dipsacales. Specifically, the Caprifoliaceae (bilaterally symmetrical clade) duplicated independently in each of the three core eudicot DIV clades. Downloaded from Using reverse transcription polymerase chain reaction (rtPCR), we showed that most of these copies are expressed across floral tissues in the Dipsacales species Heptacodium miconioides. -
Solanales Nymphaeales Austrobaileyales
Amborellales Solanales Nymphaeales Austrobaileyales Acorales G Eenzaadlobbigen G Alismatales Solanales Petrosaviales Pandanales Van de Lamiiden (Garryales, Ge Dioscoreales Lamiales) is op basis van molecu Liliales morfologische kenmerken zeke Asparagales afstammelingen van één voorou Arecales Solanales is dat nog niet zeker, G Commeliniden G Dasypogonales verwantschappen tussen de fam Poales Commelinales In de samenstelling van de Sola Zingiberales ander veranderd. De Watergent (Menyanthaceae) is verplaatst n Ceratophyllales Vlambloemfamilie (Polemoniace Chloranthales de Bosliefjesfamilie (Hydrophyll Ruwbladigenfamilie (Boraginac Canellales Piperales de Montiniaceae uit de Ribesfam G Magnoliiden G Magnoliales Saxifragales), de Hydroleaceae u Laurales (was Boraginaceae), en de Sphe Ranunculales Klokjesfamilie (Campanulaceae, Sabiales Solanales hebben meestal versp Proteales bladeren zonder steunblaadjes. Trochodendrales Buxales regelmatig, met een vergroeidb en evenveel meeldraden als kro Gunnerales op de vrucht zitten. Iridoiden ko Berberidopsidales Dilleniales voor, maar wel allerlei alkaloide Caryophyllales Santalales Solanales Saxifragales Lamiids (Garryales, Gentianales, Sol G Geavanceerde tweezaadlobbigen G Vitales supposed to be monophyletic becau Crossosomatales anatomical, and morphological cha Geraniales of the order Solanales, and relation Myrtales are not yet clear. However, some ch in the composition of this order. Me Zygophyllales Celastrales moved to Asterales, Polemoniaceae Malpighiales Hydrophyllaceae to Boraginaceae. -
A Molecular Phylogeny of the Solanaceae
TAXON 57 (4) • November 2008: 1159–1181 Olmstead & al. • Molecular phylogeny of Solanaceae MOLECULAR PHYLOGENETICS A molecular phylogeny of the Solanaceae Richard G. Olmstead1*, Lynn Bohs2, Hala Abdel Migid1,3, Eugenio Santiago-Valentin1,4, Vicente F. Garcia1,5 & Sarah M. Collier1,6 1 Department of Biology, University of Washington, Seattle, Washington 98195, U.S.A. *olmstead@ u.washington.edu (author for correspondence) 2 Department of Biology, University of Utah, Salt Lake City, Utah 84112, U.S.A. 3 Present address: Botany Department, Faculty of Science, Mansoura University, Mansoura, Egypt 4 Present address: Jardin Botanico de Puerto Rico, Universidad de Puerto Rico, Apartado Postal 364984, San Juan 00936, Puerto Rico 5 Present address: Department of Integrative Biology, 3060 Valley Life Sciences Building, University of California, Berkeley, California 94720, U.S.A. 6 Present address: Department of Plant Breeding and Genetics, Cornell University, Ithaca, New York 14853, U.S.A. A phylogeny of Solanaceae is presented based on the chloroplast DNA regions ndhF and trnLF. With 89 genera and 190 species included, this represents a nearly comprehensive genus-level sampling and provides a framework phylogeny for the entire family that helps integrate many previously-published phylogenetic studies within So- lanaceae. The four genera comprising the family Goetzeaceae and the monotypic families Duckeodendraceae, Nolanaceae, and Sclerophylaceae, often recognized in traditional classifications, are shown to be included in Solanaceae. The current results corroborate previous studies that identify a monophyletic subfamily Solanoideae and the more inclusive “x = 12” clade, which includes Nicotiana and the Australian tribe Anthocercideae. These results also provide greater resolution among lineages within Solanoideae, confirming Jaltomata as sister to Solanum and identifying a clade comprised primarily of tribes Capsiceae (Capsicum and Lycianthes) and Physaleae. -
A Recircumscription of Linnaea (Caprifoliaceae)
Phytotaxa 125 (1): 25–32 (2013) ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ Article PHYTOTAXA Copyright © 2013 Magnolia Press ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.125.1.4 Twins are not alone: a recircumscription of Linnaea (Caprifoliaceae) MAARTEN J.M. CHRISTENHUSZ Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3DS, United Kingdom; E-mail: [email protected] Abstract The genus Linnaea is reviewed and expanded to include the genera Abelia (excluding section Zabelia), Diabelia, Dipelta, Kolkwitzia and Vesalea, making it monophyletic and comprising 16 species. The history of the generic name is discussed. An updated description for the genus Linnaea is provided and new combinations or names for all taxa are provided in Linnaea. Key words: botanical history, genus concepts, inflorescence structure Introduction Linnaea borealis Gronovius ex Linnaeus (1753: 631) was named in honour of Carolus Linnaeus to whom we owe the system of binomial nomenclature. The name was first coined by Dutch botanist Jan Frederik Gronovius (in Linnaeus 1737), because it was Linnaeus’s favourite plant ‘Planta nostra’, which was later adopted by Linnaeus himself in his Species plantarum (1753). It is currently restricted to a single species, which may be considered unfortunate, because it honours such an important botanist. Ricket (1941) wrote that ‘Linnaeus regarded it as his solemn duty to perpetuate the names of great botanists in generic names’, and even though at the time it was argued that there often is no connection between the name and the botanist, ‘there will be such charm in the association that it will never fade from memory’. -
Phylogeny and Phylogenetic Nomenclature of the Campanulidae Based on an Expanded Sample of Genes and Taxa
Systematic Botany (2010), 35(2): pp. 425–441 © Copyright 2010 by the American Society of Plant Taxonomists Phylogeny and Phylogenetic Nomenclature of the Campanulidae based on an Expanded Sample of Genes and Taxa David C. Tank 1,2,3 and Michael J. Donoghue 1 1 Peabody Museum of Natural History & Department of Ecology & Evolutionary Biology, Yale University, P. O. Box 208106, New Haven, Connecticut 06520 U. S. A. 2 Department of Forest Resources & Stillinger Herbarium, College of Natural Resources, University of Idaho, P. O. Box 441133, Moscow, Idaho 83844-1133 U. S. A. 3 Author for correspondence ( [email protected] ) Communicating Editor: Javier Francisco-Ortega Abstract— Previous attempts to resolve relationships among the primary lineages of Campanulidae (e.g. Apiales, Asterales, Dipsacales) have mostly been unconvincing, and the placement of a number of smaller groups (e.g. Bruniaceae, Columelliaceae, Escalloniaceae) remains uncertain. Here we build on a recent analysis of an incomplete data set that was assembled from the literature for a set of 50 campanulid taxa. To this data set we first added newly generated DNA sequence data for the same set of genes and taxa. Second, we sequenced three additional cpDNA coding regions (ca. 8,000 bp) for the same set of 50 campanulid taxa. Finally, we assembled the most comprehensive sample of cam- panulid diversity to date, including ca. 17,000 bp of cpDNA for 122 campanulid taxa and five outgroups. Simply filling in missing data in the 50-taxon data set (rendering it 94% complete) resulted in a topology that was similar to earlier studies, but with little additional resolution or confidence.