The Relationship Between Conspecific Fertilization Success and Reproductive Isolation Among Three Congeneric Sea Urchins
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X-Ray Microct Study of Pyramids of the Sea Urchin Lytechinus Variegatus
Journal of Structural Biology Journal of Structural Biology 141 (2003) 9–21 www.elsevier.com/locate/yjsbi X-ray microCT study of pyramids of the sea urchin Lytechinus variegatus S.R. Stock,a,* S. Nagaraja,b J. Barss,c T. Dahl,c and A. Veisc a Institute for Bioengineering and Nanoscience in Advanced Medicine, Northwestern University, 303 E. Chicago Avenue, Tarry 16-717, Chicago, IL 60611-3008, USA b School of Mechanical Engineering, Georgia Institute of Technology, Atlanta, GA 30332, USA c Department of Cell and Molecular Biology, Northwestern University, Chicago, IL 60611, USA Received 19 June 2002, and in revised form 23 September 2002 Abstract This paper reports results of a novel approach, X-ray microCT, for quantifying stereom structures applied to ossicles of the sea urchin Lytechinus variegatus. MicroCT, a high resolution variant of medical CT (computed tomography), allows noninvasive mapping of microstructure in 3-D with spatial resolution approaching that of optical microscopy. An intact pyramid (two demi- pyramids, tooth epiphyses, and one tooth) was reconstructed with 17 lm isotropic voxels (volume elements); two individual demipyramids and a pair of epiphyses were studied with 9–13 lm isotropic voxels. The cross-sectional maps of a linear attenuation coefficient produced by the reconstruction algorithm showed that the structure of the ossicles was quite heterogeneous on the scale of tens to hundreds of micrometers. Variations in magnesium content and in minor elemental constitutents could not account for the observed heterogeneities. Spatial resolution was insufficient to resolve the individual elements of the stereom, but the observed values of the linear attenuation coefficient (for the 26 keV effective X-ray energy, a maximum of 7.4 cmÀ1 and a minimum of 2cmÀ1 away from obvious voids) could be interpreted in terms of fractions of voxels occupied by mineral (high magnesium calcite). -
DNA Variation and Symbiotic Associations in Phenotypically Diverse Sea Urchin Strongylocentrotus Intermedius
DNA variation and symbiotic associations in phenotypically diverse sea urchin Strongylocentrotus intermedius Evgeniy S. Balakirev*†‡, Vladimir A. Pavlyuchkov§, and Francisco J. Ayala*‡ *Department of Ecology and Evolutionary Biology, University of California, Irvine, CA 92697-2525; †Institute of Marine Biology, Vladivostok 690041, Russia; and §Pacific Research Fisheries Centre (TINRO-Centre), Vladivostok, 690600 Russia Contributed by Francisco J. Ayala, August 20, 2008 (sent for review May 9, 2008) Strongylocentrotus intermedius (A. Agassiz, 1863) is an economically spines of the U form are relatively short; the length, as a rule, does important sea urchin inhabiting the northwest Pacific region of Asia. not exceed one third of the radius of the testa. The spines of the G The northern Primorye (Sea of Japan) populations of S. intermedius form are longer, reaching and frequently exceeding two thirds of the consist of two sympatric morphological forms, ‘‘usual’’ (U) and ‘‘gray’’ testa radius. The testa is significantly thicker in the U form than in (G). The two forms are significantly different in morphology and the G form. The morphological differences between the U and G preferred bathymetric distribution, the G form prevailing in deeper- forms of S. intermedius are stable and easily recognizable (Fig. 1), water settlements. We have analyzed the genetic composition of the and they are systematically reported for the northern Primorye S. intermedius forms using the nucleotide sequences of the mitochon- coast region (V.A.P., unpublished data). drial gene encoding the cytochrome c oxidase subunit I and the Little is known about the population genetics of S. intermedius; nuclear gene encoding bindin to evaluate the possibility of cryptic the available data are limited to allozyme polymorphisms (4–6). -
Sea Urchins As an Inspiration for Robotic Designs
Sea urchins as an inspiration for robotic designs Article Published Version Creative Commons: Attribution 4.0 (CC-BY) Open Access Stiefel, K. and Barrett, G. (2018) Sea urchins as an inspiration for robotic designs. Journal of Marine Science and Engineering, 6 (4). 112. ISSN 2077-1312 doi: https://doi.org/10.3390/jmse6040112 Available at http://centaur.reading.ac.uk/79763/ It is advisable to refer to the publisher’s version if you intend to cite from the work. See Guidance on citing . To link to this article DOI: http://dx.doi.org/10.3390/jmse6040112 Publisher: MDPI All outputs in CentAUR are protected by Intellectual Property Rights law, including copyright law. Copyright and IPR is retained by the creators or other copyright holders. Terms and conditions for use of this material are defined in the End User Agreement . www.reading.ac.uk/centaur CentAUR Central Archive at the University of Reading Reading’s research outputs online Journal of Marine Science and Engineering Review Sea Urchins as an Inspiration for Robotic Designs Klaus M. Stiefel 1,2,3 and Glyn A. Barrett 3,4,* 1 Neurolinx Research Institute, La Jolla, CA 92039, USA; [email protected] 2 Marine Science Institute, University of the Philippines, Dilliman, Quezon City 1101, Philippines 3 People and the Sea, Malapascua, Daanbantayan, Cebu 6000, Philippines 4 School of Biological Sciences, University of Reading, Reading RG6 6UR, UK * Correspondence: [email protected]; Tel.: +44-(0)-118-378-8893 Received: 25 August 2018; Accepted: 4 October 2018; Published: 10 October 2018 Abstract: Neuromorphic engineering is the approach to intelligent machine design inspired by nature. -
Sea Urchins of the Genus Gracilechinus Fell & Pawson, 1966
This article was downloaded by: [Kirill Minin] On: 02 October 2014, At: 07:19 Publisher: Taylor & Francis Informa Ltd Registered in England and Wales Registered Number: 1072954 Registered office: Mortimer House, 37-41 Mortimer Street, London W1T 3JH, UK Marine Biology Research Publication details, including instructions for authors and subscription information: http://www.tandfonline.com/loi/smar20 Sea urchins of the genus Gracilechinus Fell & Pawson, 1966 from the Pacific Ocean: Morphology and evolutionary history Kirill V. Minina, Nikolay B. Petrovb & Irina P. Vladychenskayab a P. P. Shirshov Institute of Oceanology, Russian Academy of Sciences, Moscow, Russia b A. N. Belozersky Research Institute of Physico-Chemical Biology, Moscow State University, Moscow, Russia Published online: 29 Sep 2014. Click for updates To cite this article: Kirill V. Minin, Nikolay B. Petrov & Irina P. Vladychenskaya (2014): Sea urchins of the genus Gracilechinus Fell & Pawson, 1966 from the Pacific Ocean: Morphology and evolutionary history, Marine Biology Research, DOI: 10.1080/17451000.2014.928413 To link to this article: http://dx.doi.org/10.1080/17451000.2014.928413 PLEASE SCROLL DOWN FOR ARTICLE Taylor & Francis makes every effort to ensure the accuracy of all the information (the “Content”) contained in the publications on our platform. However, Taylor & Francis, our agents, and our licensors make no representations or warranties whatsoever as to the accuracy, completeness, or suitability for any purpose of the Content. Any opinions and views expressed in this publication are the opinions and views of the authors, and are not the views of or endorsed by Taylor & Francis. The accuracy of the Content should not be relied upon and should be independently verified with primary sources of information. -
Sea Urchin Aquaculture
American Fisheries Society Symposium 46:179–208, 2005 © 2005 by the American Fisheries Society Sea Urchin Aquaculture SUSAN C. MCBRIDE1 University of California Sea Grant Extension Program, 2 Commercial Street, Suite 4, Eureka, California 95501, USA Introduction and History South America. The correct color, texture, size, and taste are factors essential for successful sea The demand for fish and other aquatic prod- urchin aquaculture. There are many reasons to ucts has increased worldwide. In many cases, develop sea urchin aquaculture. Primary natural fisheries are overexploited and unable among these is broadening the base of aquac- to satisfy the expanding market. Considerable ulture, supplying new products to growing efforts to develop marine aquaculture, particu- markets, and providing employment opportu- larly for high value products, are encouraged nities. Development of sea urchin aquaculture and supported by many countries. Sea urchins, has been characterized by enhancement of wild found throughout all oceans and latitudes, are populations followed by research on their such a group. After World War II, the value of growth, nutrition, reproduction, and suitable sea urchin products increased in Japan. When culture systems. Japan’s sea urchin supply did not meet domes- Sea urchin aquaculture first began in Ja- tic needs, fisheries developed in North America, pan in 1968 and continues to be an important where sea urchins had previously been eradi- part of an integrated national program to de- cated to protect large kelp beds and lobster fish- velop food resources from the sea (Mottet 1980; eries (Kato and Schroeter 1985; Hart and Takagi 1986; Saito 1992b). Democratic, institu- Sheibling 1988). -
Biology of the Red Sea Urchin, Strongylocentrotus Franciscanus, and Its Fishery in California
Biology of the Red Sea Urchin, Strongylocentrotus franciscanus, and Its Fishery in California SUSUMU KAT0 and STEPHEN C. SCHROETER Introduction Canada and the United States to answer quested information to help them devel- some of these needs. This report pre- op fisheries for their species of sea Since Kat0 (1972) reported on the sents relevant information from the urchins. beginning of the sea urchin fishery in literature, much of which is not readily California, it has grown dramatically. accessible to persons in the industry, as Description of Sea Urchins The catch has exceeded 11,OOO metric well as from our own investigations. A Sea urchins belong to the phylum tons (t) in 1981 in California, and up to review of red sea urchin, Strongylocen- Echinodermata, which also includes 500 t have been harvested in 1 year in trotus franciscanus (Fig. l), biology is starfish, sea cucumbers, sea lilies, and Washington. Most of the product of the given to promote understanding of brittle stars. All sea urchins have a hard fishery, the roe (both male and female natural processes which can have a calcareous shell called a test, which is gonads), is marketed in Japan, where bearing on the commercial use of sea covered with a thin epithelium and is the sea urchins as well as the roe are urchins. Descriptions of the harvesting, usually armed with spines. The mouth, called “uni.” processing, and marketing sectors of the located on the underside, consists of five Inevitabky, development of the fishery industry are also presented. We hope calcareous plates called “Aristotle’s lan- has raised questions about the status of that this information will aid in main- tern” in honor of the Greek naturalist populations, and effects of the fishery taining a commercially viable and envi- and philosopher. -
Microbial Composition and Genes for Key Metabolic Attributes in the Gut
Article Microbial Composition and Genes for Key Metabolic Attributes in the Gut Digesta of Sea Urchins Lytechinus variegatus and Strongylocentrotus purpuratus Using Shotgun Metagenomics Joseph A. Hakim 1,†, George B. H. Green 1, Stephen A. Watts 1, Michael R. Crowley 2, Casey D. Morrow 3,* and Asim K. Bej 1,* 1 Department of Biology, The University of Alabama at Birmingham, 1300 University Blvd., Birmingham, AL 35294, USA; [email protected] (J.A.H.); [email protected] (G.B.H.G.); [email protected] (S.A.W.) 2 Department of Genetics, Heflin Center Genomics Core, School of Medicine, The University of Alabama at Birmingham, 705 South 20th Street, Birmingham, AL 35294, USA; [email protected] 3 Department of Cell, Developmental and Integrative Biology, The University of Alabama at Birmingham, 1918 University Blvd., Birmingham, AL 35294, USA * Correspondence: [email protected] (C.D.M.); [email protected] (A.K.B.); Tel.: +1-205-934-5705 (C.D.M.); +1-205-934-9857 (A.K.B.) † Current Address: School of Medicine (M.D.), The University of Alabama at Birmingham, 1670 University Blvd, Birmingham, AL 35233, USA. Abstract: This paper describes the microbial community composition and genes for key metabolic genes, particularly the nitrogen fixation of the mucous-enveloped gut digesta of green (Lytechinus variegatus) and purple (Strongylocentrotus purpuratus) sea urchins by using the shotgun metagenomics Citation: Hakim, J.A.; Green, G.B.H.; approach. Both green and purple urchins showed high relative abundances of Gammaproteobacteria Watts, S.A.; Crowley, M.R.; Morrow, at 30% and 60%, respectively. However, Alphaproteobacteria in the green urchins had higher relative C.D.; Bej, A.K. -
The Purple Sea Urchin Strongylocentrotus Purpuratus
microorganisms Article The Purple Sea Urchin Strongylocentrotus purpuratus Demonstrates a Compartmentalization of Gut Bacterial Microbiota, Predictive Functional Attributes, and Taxonomic Co-Occurrence Joseph A. Hakim 1,*, Julie B. Schram 2, Aaron W. E. Galloway 2, Casey D. Morrow 3, Michael R. Crowley 4, Stephen A. Watts 1 and Asim K. Bej 1,* 1 Department of Biology, University of Alabama at Birmingham, 1300 University Blvd., Birmingham, AL 35294, USA; [email protected] 2 Oregon Institute of Marine Biology, University of Oregon, 63466 Boat Basin Rd, Charleston, OR 97420, USA; [email protected] (J.B.S.); [email protected] (A.W.E.G.) 3 Department of Cell, Developmental and Integrative Biology, University of Alabama at Birmingham, 1918 University Blvd., Birmingham, AL 35294, USA; [email protected] 4 Department of Genetics, Heflin Center Genomics Core, School of Medicine, University of Alabama at Birmingham, 705 South 20th Street, Birmingham, AL 35294, USA; [email protected] * Correspondence: [email protected] (J.A.H.); [email protected] (A.K.B.); Tel.: +1-(205)-934-9857 (A.K.B.) Received: 8 November 2018; Accepted: 21 January 2019; Published: 26 January 2019 Abstract: The sea urchin Strongylocentrotus purpuratus (order Camarodonta, family Strongylocentrotidae) can be found dominating low intertidal pool biomass on the southern coast of Oregon, USA. In this case study, three adult sea urchins were collected from their shared intertidal pool, and the bacteriome of their pharynx, gut tissue, and gut digesta, including their tide pool water and algae, was determined using targeted high-throughput sequencing (HTS) of the 16S rRNA genes and bioinformatics tools. Overall, the gut tissue demonstrated Arcobacter and Sulfurimonas (Epsilonproteobacteria) to be abundant, whereas the gut digesta was dominated by Psychromonas (Gammaproteobacteria), Propionigenium (Fusobacteria), and Flavobacteriales (Bacteroidetes). -
Tool Use by Four Species of Indo-Pacific Sea Urchins
Journal of Marine Science and Engineering Article Tool Use by Four Species of Indo-Pacific Sea Urchins Glyn A. Barrett 1,2,* , Dominic Revell 2, Lucy Harding 2, Ian Mills 2, Axelle Jorcin 2 and Klaus M. Stiefel 2,3,4 1 School of Biological Sciences, University of Reading, Reading RG6 6UR, UK 2 People and The Sea, Logon, Daanbantayan, Cebu 6000, Philippines; [email protected] (D.R.); lucy@peopleandthesea (L.H.); [email protected] (I.M.); [email protected] (A.J.); [email protected] (K.M.S.) 3 Neurolinx Research Institute, La Jolla, CA 92039, USA 4 Marine Science Institute, University of the Philippines, Diliman, Quezon City 1101, Philippines * Correspondence: [email protected] Received: 5 February 2019; Accepted: 14 March 2019; Published: 18 March 2019 Abstract: We compared the covering behavior of four sea urchin species, Tripneustes gratilla, Pseudoboletia maculata, Toxopneustes pileolus, and Salmacis sphaeroides found in the waters of Malapascua Island, Cebu Province and Bolinao, Panagsinan Province, Philippines. Specifically, we measured the amount and type of covering material on each sea urchin, and in several cases, the recovery of debris material after stripping the animal of its cover. We found that Tripneustes gratilla and Salmacis sphaeroides have a higher affinity for plant material, especially seagrass, compared to Pseudoboletia maculata and Toxopneustes pileolus, which prefer to cover themselves with coral rubble and other calcified material. Only in Toxopneustes pileolus did we find a significant corresponding depth-dependent decrease in total cover area, confirming previous work that covering behavior serves as a protection mechanism against UV radiation. We found no dependence of particle size on either species or size of sea urchin, but we observed that larger sea urchins generally carried more and heavier debris. -
The Feasibility of Enhancing Red Sea Urchin, Strongylocentrotus Franciscanus, Stocks in California: an Analysis of the Options
The Feasibility of Enhancing Red Sea Urchin, Strongylocentrotus franciscanus, Stocks in California: An Analysis of the Options MIA J. TEGNER Introduction tially throughout the range of the fish Ui 25,000 ery, the alternatives are a reduced c: B 20,000 The red sea urchin, Strongylocen harvest and contraction of the indus .!'! ~ 15,000 trotus franciscanus, is the largest try, or stock enhancement to maintain §. echinoid in kelp forest communities populations above what is possible ~ 10,000 c: along the west coast of North America with current fishery practices. The =g 5,000 C\l and is fished commercially from Brit spectacular successes achieved with ...J o+--..:.....~---.---~~~ ish Columbia to Baja California some finfishes, notably the salmonids, 1970 1975 1980 1985 (Sloan, 1986). The California sea as well as the many recent advances in Figure I.-California landings of urchin fishery began in the early aquaculture, have led to widespread red sea urchins, 1971-87 (Calif. 1970's and grew very rapidly to total interest in the second and more eco Dep. Fish Game. Unpubl. data). landings of more than 20,000 metric nomically appealing alternative. Here, tons (t) in 1987 (Kato and Schroeter, I examine potential options for the en l 1985; Parker ). By 1987, this was the hancement of red sea urchin stocks, second most valuable fishery in Cali consider the conditions under which methods to enhance fishable stocks. fornia waters with a landed value of each might be appropriate, and make The success of all attempts to enhance $13,693,000. There are no unfished relative estimates of the costs and ef benthic invertebrate stocks by the re stocks left in southern California; only fort involved. -
Trans-Species Polymorphism in Mitochondrial Genome of Camarodont Sea Urchins
G C A T T A C G G C A T genes Communication Trans-Species Polymorphism in Mitochondrial Genome of Camarodont Sea Urchins Evgeniy S. Balakirev 1,2 1 National Scientific Center of Marine Biology, Far Eastern Branch, Russian Academy of Sciences, 17 Palchevsky Street, 690041 Vladivostok, Russia; [email protected]; Tel.: +7-423-231-0905 or +7-423-243-3280 2 School of Biomedicine, Far Eastern Federal University, 8 Sukhanov Street, 690950 Vladivostok, Russia Received: 24 June 2019; Accepted: 2 August 2019; Published: 5 August 2019 Abstract: Mitochondrial (mt) genomes of the sea urchins Strongylocentrotus intermedius and Mesocentrotus nudus demonstrate the identical patterns of intraspecific length variability of the ND6 gene, consisting of 489 bp (S variant) and 498 bp (L variant), respectively. For both species, the ND6 length difference is due to the 488A>G substitution, which changes the stop codon TAG in S variant for a tryptophan codon TGG in L variant and elongates the corresponding ND6 protein by three additional amino acids, Trp-Leu-Trp. The phylogenetic analysis based on mt genomes of sea urchins and related echinoderm groups from GenBank has shown the S and L ND6 variants as shared among the camarodont sea urchins; the rest of the echinoderms demonstrate the S variant only. The data suggest that the ND6 488A>G substitution can be the first example of the trans-species polymorphism in sea urchins, persisting at least since the time of the Odontophora diversification at the Eocene/Oligocene boundary (approximately 34 million years ago), which was characterized by an abrupt climate change and significant global ocean cooling. -
Complete Mitogenome of the Edible Sea Urchin Loxechinus Albus: Genetic Structure and Comparative Genomics Within Echinozoa
Mol Biol Rep DOI 10.1007/s11033-014-3847-5 Complete mitogenome of the edible sea urchin Loxechinus albus: genetic structure and comparative genomics within Echinozoa Graciela Cea • Juan Diego Gaita´n-Espitia • Leyla Ca´rdenas Received: 7 May 2014 / Accepted: 25 November 2014 Ó Springer Science+Business Media Dordrecht 2014 Abstract The edible Chilean red sea urchin, Loxechinus Hemicentrotus, whereas the other included species of albus, is the only species of its genus and endemic to the Mesocentrotus and Pseudocentrotus. Southeastern Pacific. In this study, we reconstructed the mitochondrial genome of L. albus by combining Sanger Keywords Loxechinus albus Á Mitochondrial genome Á and pyrosequencing technologies. The mtDNA genome Genome architecture Á Echinodermata had a length of 15,737 bp and encoded the same 13 pro- tein-coding genes, 22 transfer RNA genes, and two ribo- somal RNA genes as other animal mtDNAs. The size of Introduction this mitogenome was similar to those of other Echinoder- mata species. Structural comparisons showed a highly Metazoan mitochondrial DNA (mtDNA) is typically a conserved structure, composition, and gene order within circular double-stranded molecule of approximately Echinoidea and Holothuroidea, and nearly identical gene 12–20 kb length that contains 13 protein-coding genes organization to that found in Asteroidea and Crinoidea, (PCGs) involved in oxidative phosphorylation (OXPHOS), with the majority of differences explained by the inversions 22 transfer RNA (tRNA) genes necessary to translate the of some tRNA genes. Phylogenetic reconstruction sup- PCGs, two ribosomal RNA genes (rRNA), and a major AT- ported the monophyly of Echinozoa and recovered the rich non-coding region usually denominated the mito- monophyletic relationship of Holothuroidea and Echinoi- chondrial control region [1, 2].