Complete Mitogenome of the Edible Sea Urchin Loxechinus Albus: Genetic Structure and Comparative Genomics Within Echinozoa
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
"Lophophorates" Brachiopoda Echinodermata Asterozoa
Deuterostomes Bryozoa Phoronida "lophophorates" Brachiopoda Echinodermata Asterozoa Stelleroidea Asteroidea Ophiuroidea Echinozoa Holothuroidea Echinoidea Crinozoa Crinoidea Chaetognatha (arrow worms) Hemichordata (acorn worms) Chordata Urochordata (sea squirt) Cephalochordata (amphioxoius) Vertebrata PHYLUM CHAETOGNATHA (70 spp) Arrow worms Fossils from the Cambrium Carnivorous - link between small phytoplankton and larger zooplankton (1-15 cm long) Pharyngeal gill pores No notochord Peculiar origin for mesoderm (not strictly enterocoelous) Uncertain relationship with echinoderms PHYLUM HEMICHORDATA (120 spp) Acorn worms Pharyngeal gill pores No notochord (Stomochord cartilaginous and once thought homologous w/notochord) Tornaria larvae very similar to asteroidea Bipinnaria larvae CLASS ENTEROPNEUSTA (acorn worms) Marine, bottom dwellers CLASS PTEROBRANCHIA Colonial, sessile, filter feeding, tube dwellers Small (1-2 mm), "U" shaped gut, no gill slits PHYLUM CHORDATA Body segmented Axial notochord Dorsal hollow nerve chord Paired gill slits Post anal tail SUBPHYLUM UROCHORDATA Marine, sessile Body covered in a cellulose tunic ("Tunicates") Filter feeder (» 200 L/day) - perforated pharnx adapted for filtering & repiration Pharyngeal basket contractable - squirts water when exposed at low tide Hermaphrodites Tadpole larvae w/chordate characteristics (neoteny) CLASS ASCIDIACEA (sea squirt/tunicate - sessile) No excretory system Open circulatory system (can reverse blood flow) Endostyle - (homologous to thyroid of vertebrates) ciliated groove -
Systematic Comparison of Sea Urchin and Sea Star Developmental Gene Regulatory Networks Explains How Novelty Is Incorporated in Early Development
ARTICLE https://doi.org/10.1038/s41467-020-20023-4 OPEN Systematic comparison of sea urchin and sea star developmental gene regulatory networks explains how novelty is incorporated in early development Gregory A. Cary 1,3,5, Brenna S. McCauley1,4,5, Olga Zueva1, Joseph Pattinato1, William Longabaugh2 & ✉ Veronica F. Hinman 1 1234567890():,; The extensive array of morphological diversity among animal taxa represents the product of millions of years of evolution. Morphology is the output of development, therefore phenotypic evolution arises from changes to the topology of the gene regulatory networks (GRNs) that control the highly coordinated process of embryogenesis. A particular challenge in under- standing the origins of animal diversity lies in determining how GRNs incorporate novelty while preserving the overall stability of the network, and hence, embryonic viability. Here we assemble a comprehensive GRN for endomesoderm specification in the sea star from zygote through gastrulation that corresponds to the GRN for sea urchin development of equivalent territories and stages. Comparison of the GRNs identifies how novelty is incorporated in early development. We show how the GRN is resilient to the introduction of a transcription factor, pmar1, the inclusion of which leads to a switch between two stable modes of Delta-Notch signaling. Signaling pathways can function in multiple modes and we propose that GRN changes that lead to switches between modes may be a common evolutionary mechanism for changes in embryogenesis. Our data additionally proposes a model in which evolutionarily conserved network motifs, or kernels, may function throughout development to stabilize these signaling transitions. 1 Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA 15213, USA. -
(Echinodermata: Holothuroidea) from the Latest Cretaceous Of
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Universität München: Elektronischen Publikationen 285 Zitteliana 89 Short Communication First report of sea cucumbers (Echinodermata: Holothuroidea) from the latest Cretaceous of Paläontologie Bayerische Bavaria,GeoBio- Germany & Geobiologie Center Staatssammlung 1,2,3 LMU München für Paläontologie und Geologie LMUMike MünchenReich 1 n München, 01.07.2017 SNSB - Bayerische Staatssammlung für Paläontologie und Geologie, Richard-Wagner-Straße 10, 80333 Munich, Germany 2 n Manuscript received Ludwig-Maximilians-Universität München, Department für Geo- und Umweltwissenschaften, 30.12.2016; revision ac- Paläontologie und Geobiologie, Richard-Wagner-Straße 10, 80333 Munich, Germany 3 cepted 21.01.2017 GeoBio-Center der Ludwig-Maximilians-Universität München, Richard-Wagner-Straße 10, 80333 Munich, Germany n ISSN 0373-9627 E-mail: [email protected] n ISBN 978-3-946705-00-0 Zitteliana 89, 285–289. Key words: fossil Holothuroidea; Cretaceous; Maastrichtian; Bavaria; Germany Schüsselwörter: fossile Holothuroidea; Kreide; Maastrichtium; Bayern; Deutschland The Bavarian Gerhardtsreit Formation (‶Gerhardts- 1993; Smith 2004) due to different reasons (Reich reiter Mergel″ / ‶Gerhardtsreiter Schichten″; cf. 2013). There are nearly 1,700 valid extant sea cucum- Böhm 1891; Hagn 1960; Wagreich et al. 2004), also ber species (Smiley 1994; Kerr 2003; Paulay pers. known as Gerhartsreit Formation (‶Gerhartsreiter comm.) known worldwide. The fossil record (since Schichten″; Hagn et al. 1981, 1992; Schwarzhans the Middle Ordovician; Reich 1999, 2010), by con- 2010; Pollerspöck & Beaury 2014) or ‶Gerhards- trast, is discontinuous in time and recorded ranges reuter Schichten″ (Egger 1899; Hagn & Hölzl 1952; of species with around 1,000 reported forms (Reich de Klasz 1956; Herm 1979, 2000) is exposed in Up- 2013, 2014, 2015b) since the early 19th century. -
Gene Expression Patterns of Red Sea Urchins (Mesocentrotus Franciscanus) Exposed to Different Combinations of Temperature and Pco2 During Early Development Juliet M
Wong and Hofmann BMC Genomics (2021) 22:32 https://doi.org/10.1186/s12864-020-07327-x RESEARCH ARTICLE Open Access Gene expression patterns of red sea urchins (Mesocentrotus franciscanus) exposed to different combinations of temperature and pCO2 during early development Juliet M. Wong1,2* and Gretchen E. Hofmann1 Abstract Background: The red sea urchin Mesocentrotus franciscanus is an ecologically important kelp forest herbivore and an economically valuable wild fishery species. To examine how M. franciscanus responds to its environment on a molecular level, differences in gene expression patterns were observed in embryos raised under combinations of two temperatures (13 °C or 17 °C) and two pCO2 levels (475 μatm or 1050 μatm). These combinations mimic various present-day conditions measured during and between upwelling events in the highly dynamic California Current System with the exception of the 17 °C and 1050 μatm combination, which does not currently occur. However, as ocean warming and acidification continues, warmer temperatures and higher pCO2 conditions are expected to increase in frequency and to occur simultaneously. The transcriptomic responses of the embryos were assessed at two developmental stages (gastrula and prism) in light of previously described plasticity in body size and thermotolerance under these temperature and pCO2 treatments. Results: Although transcriptomic patterns primarily varied by developmental stage, there were pronounced differences in gene expression as a result of the treatment conditions. Temperature and pCO2 treatments led to the differential expression of genes related to the cellular stress response, transmembrane transport, metabolic processes, and the regulation of gene expression. At each developmental stage, temperature contributed significantly to the observed variance in gene expression, which was also correlated to the phenotypic attributes of the embryos. -
ASSESSMENT of COASTAL WATER RESOURCES and WATERSHED CONDITIONS at CHANNEL ISLANDS NATIONAL PARK, CALIFORNIA Dr. Diana L. Engle
National Park Service U.S. Department of the Interior Technical Report NPS/NRWRD/NRTR-2006/354 Water Resources Division Natural Resource Program Centerent of the Interior ASSESSMENT OF COASTAL WATER RESOURCES AND WATERSHED CONDITIONS AT CHANNEL ISLANDS NATIONAL PARK, CALIFORNIA Dr. Diana L. Engle The National Park Service Water Resources Division is responsible for providing water resources management policy and guidelines, planning, technical assistance, training, and operational support to units of the National Park System. Program areas include water rights, water resources planning, marine resource management, regulatory guidance and review, hydrology, water quality, watershed management, watershed studies, and aquatic ecology. Technical Reports The National Park Service disseminates the results of biological, physical, and social research through the Natural Resources Technical Report Series. Natural resources inventories and monitoring activities, scientific literature reviews, bibliographies, and proceedings of technical workshops and conferences are also disseminated through this series. Mention of trade names or commercial products does not constitute endorsement or recommendation for use by the National Park Service. Copies of this report are available from the following: National Park Service (970) 225-3500 Water Resources Division 1201 Oak Ridge Drive, Suite 250 Fort Collins, CO 80525 National Park Service (303) 969-2130 Technical Information Center Denver Service Center P.O. Box 25287 Denver, CO 80225-0287 Cover photos: Top Left: Santa Cruz, Kristen Keteles Top Right: Brown Pelican, NPS photo Bottom Left: Red Abalone, NPS photo Bottom Left: Santa Rosa, Kristen Keteles Bottom Middle: Anacapa, Kristen Keteles Assessment of Coastal Water Resources and Watershed Conditions at Channel Islands National Park, California Dr. Diana L. -
(Echinoidea, Echinidae) (Belgium) by Joris Geys
Meded. Werkgr. Tert. Kwart. Geol. 26(1) 3-10 1 fig., 1 tab., 1 pi. Leiden, maart 1989 On the presence of Gracilechinus (Echinoidea, Echinidae) in the Late Miocene of the Antwerp area (Belgium) by Joris Geys University of Antwerp (RUCA), Antwerp, Belgium and Robert Marquet Antwerp, Belgium. Geys, J., & R. Marquet. On the presence of Gracilechinus (Echinoidea, in the of — Echinidae) Late Miocene the Antwerp area (Belgium). Meded. Werkgr. Tert. Kwart. Geol., 26(1): 00-00, 1 fig., 1 tab., 1 pi. Leiden, March 1989. Some well-preserved specimens of the regular echinoid Gracilechinus gracilis nysti (Cotteau, 1880) were collected in a temporary outcrop at Borgerhout-Antwerp, in sandstones reworked from the Deurne Sands (Late Miocene). The systematic status of this subspecies is discussed. The present state of knowledge of the Echinidae from the Neogene of the North Sea Basin is reviewed. Prof. Dr J. Geys, Dept. of Geology, University of Antwerp (RUCA), Groenenborgerlaan 171, B-2020 Antwerp, Belgium. Dr R. Marquet, Constitutiestraat 50, B-2008 Antwerp, Belgium, Contents — 3 Introduction, p. 4 Systematic palaeontology, p. 6 Discussion, p. Echinidae in the Neogene of the North Sea Basin—some considerations on 8 systematics, p. 10. References, p. INTRODUCTION extensive excavations the of E17-E18 indicated E3 Because of along western verge motorway (also as ‘Kleine and Ring’) at Borgerhout-Antwerp (Belgium), a remarkable outcrop of Neogene Quaternary beds accessible from The was March to November 1987. outcrop was situated between this motorway and the and extended from the the both ‘Singel’-road, ‘Stenenbrug’ to ‘Zurenborgbrug’, on sides 4 of the exit. -
First Record of the Irregular Sea Urchin Lovenia Cordiformis (Echinodermata: Spatangoida: Loveniidae) in Colombia C
Muñoz and Londoño-Cruz Marine Biodiversity Records (2016) 9:67 DOI 10.1186/s41200-016-0022-9 RECORD Open Access First record of the irregular sea urchin Lovenia cordiformis (Echinodermata: Spatangoida: Loveniidae) in Colombia C. G. Muñoz1* and E. Londoño-Cruz1,2 Abstract Background: A first record of occurrence of the irregular sea urchin Lovenia cordiformis in the Colombian Pacific is herein reported. Results: We collected one specimen of Lovenia cordiformis at Gorgona Island (Colombia) in a shallow sandy bottom next to a coral reef. Basic morphological data and images of the collected specimen are presented. The specimen now lies at the Echinoderm Collection of the Marine Biology Section at Universidad del Valle (Cali, Colombia; Tag Code UNIVALLE: CRBMeq-UV: 2014–001). Conclusions: This report fills a gap in and completes the distribution of the species along the entire coast of the Panamic Province in the Tropical Eastern Pacific, updating the echinoderm richness for Colombia to 384 species. Keywords: Lovenia cordiformis, Loveniidae, Sea porcupine, Heart urchin, Gorgona Island Background continental shelf of the Pacific coast of Colombia, filling Heart shape-bodied sea urchins also known as sea por- in a gap of its coastal distribution in the Tropical Eastern cupines (family Loveniidae), are irregular echinoids char- Pacific (TEP). acterized by its secondary bilateral symmetry. Unlike most sea urchins, features of the Loveniidae provide dif- Materials and methods ferent anterior-posterior ends, with mouth and anus lo- One Lovenia cordiformis specimen was collected on cated ventrally and distally on an oval-shaped horizontal October 19, 2012 by snorkeling during low tide at ap- plane. -
And Red Sea Urchins
NEGATIVELY CORRELATED ABUNDANCE SUGGESTS COMPETITION BETWEEN RED ABALONE (Haliotis rufescens) AND RED SEA URCHINS (Mesocentrotus franciscanus) INSIDE AND OUTSIDE ESTABLISHED MPAs CLOSED TO COMMERCIAL SEA URCHIN HARVEST IN NORTHERN CALIFORNIA By Johnathan Centoni A Thesis Presented to The Faculty of Humboldt State University In Partial Fulfillment of the Requirements for the Degree Master of Science in Biology Committee Membership Dr. Sean Craig, Committee Chair Dr. Brian Tissot, Committee Member Dr. Paul Bourdeau, Committee Member Dr. Joe Tyburczy, Committee Member Dr. Erik Jules, Program Graduate Coordinator May 2018 ABSTRACT NEGATIVELY CORRELATED ABUNDANCE SUGGESTS COMPETITION BETWEEN RED ABALONE (Haliotis rufescens) AND RED SEA URCHINS (Mesocentrotus franciscanus) INSIDE AND OUTSIDE ESTABLISHED MPAs CLOSED TO COMMERCIAL SEA URCHIN HARVEST IN NORTHERN CALIFORNIA Johnathan Centoni Red abalone and sea urchins are both important herbivores that potentially compete with each other for resources like food and space along the California coast. Red abalone supported a socioeconomically important recreational fishery during this study (which was closed in 2018) and red sea urchins support an important commercial fishery. Both red sea urchins and red abalone feed on the same macroalgae (including Pterygophora californica, Laminaria setchellii, Stephanocystis osmundacea, Costaria costata, Alaria marginata, Nereocystis leutkeana), and a low abundance of this food source during the period of this project may have created a highly competitive environment for urchins and abalone. Evidence that suggests competition between red abalone and red sea urchins can be seen within data collected during the years of this study (2014-2016): a significantly higher red sea urchin density, concomitant with a significantly lower red abalone density, was observed within areas closed to commercial sea urchin harvest (in MPAs) compared to nearby reference areas open to sea urchin harvest. -
X-Ray Microct Study of Pyramids of the Sea Urchin Lytechinus Variegatus
Journal of Structural Biology Journal of Structural Biology 141 (2003) 9–21 www.elsevier.com/locate/yjsbi X-ray microCT study of pyramids of the sea urchin Lytechinus variegatus S.R. Stock,a,* S. Nagaraja,b J. Barss,c T. Dahl,c and A. Veisc a Institute for Bioengineering and Nanoscience in Advanced Medicine, Northwestern University, 303 E. Chicago Avenue, Tarry 16-717, Chicago, IL 60611-3008, USA b School of Mechanical Engineering, Georgia Institute of Technology, Atlanta, GA 30332, USA c Department of Cell and Molecular Biology, Northwestern University, Chicago, IL 60611, USA Received 19 June 2002, and in revised form 23 September 2002 Abstract This paper reports results of a novel approach, X-ray microCT, for quantifying stereom structures applied to ossicles of the sea urchin Lytechinus variegatus. MicroCT, a high resolution variant of medical CT (computed tomography), allows noninvasive mapping of microstructure in 3-D with spatial resolution approaching that of optical microscopy. An intact pyramid (two demi- pyramids, tooth epiphyses, and one tooth) was reconstructed with 17 lm isotropic voxels (volume elements); two individual demipyramids and a pair of epiphyses were studied with 9–13 lm isotropic voxels. The cross-sectional maps of a linear attenuation coefficient produced by the reconstruction algorithm showed that the structure of the ossicles was quite heterogeneous on the scale of tens to hundreds of micrometers. Variations in magnesium content and in minor elemental constitutents could not account for the observed heterogeneities. Spatial resolution was insufficient to resolve the individual elements of the stereom, but the observed values of the linear attenuation coefficient (for the 26 keV effective X-ray energy, a maximum of 7.4 cmÀ1 and a minimum of 2cmÀ1 away from obvious voids) could be interpreted in terms of fractions of voxels occupied by mineral (high magnesium calcite). -
DNA Variation and Symbiotic Associations in Phenotypically Diverse Sea Urchin Strongylocentrotus Intermedius
DNA variation and symbiotic associations in phenotypically diverse sea urchin Strongylocentrotus intermedius Evgeniy S. Balakirev*†‡, Vladimir A. Pavlyuchkov§, and Francisco J. Ayala*‡ *Department of Ecology and Evolutionary Biology, University of California, Irvine, CA 92697-2525; †Institute of Marine Biology, Vladivostok 690041, Russia; and §Pacific Research Fisheries Centre (TINRO-Centre), Vladivostok, 690600 Russia Contributed by Francisco J. Ayala, August 20, 2008 (sent for review May 9, 2008) Strongylocentrotus intermedius (A. Agassiz, 1863) is an economically spines of the U form are relatively short; the length, as a rule, does important sea urchin inhabiting the northwest Pacific region of Asia. not exceed one third of the radius of the testa. The spines of the G The northern Primorye (Sea of Japan) populations of S. intermedius form are longer, reaching and frequently exceeding two thirds of the consist of two sympatric morphological forms, ‘‘usual’’ (U) and ‘‘gray’’ testa radius. The testa is significantly thicker in the U form than in (G). The two forms are significantly different in morphology and the G form. The morphological differences between the U and G preferred bathymetric distribution, the G form prevailing in deeper- forms of S. intermedius are stable and easily recognizable (Fig. 1), water settlements. We have analyzed the genetic composition of the and they are systematically reported for the northern Primorye S. intermedius forms using the nucleotide sequences of the mitochon- coast region (V.A.P., unpublished data). drial gene encoding the cytochrome c oxidase subunit I and the Little is known about the population genetics of S. intermedius; nuclear gene encoding bindin to evaluate the possibility of cryptic the available data are limited to allozyme polymorphisms (4–6). -
The Panamic Biota: Some Observations Prior to a Sea-Level Canal
Bulletin of the Biological Society of Washington No. 2 THE PANAMIC BIOTA: SOME OBSERVATIONS PRIOR TO A SEA-LEVEL CANAL A Symposium Sponsored by The Biological Society of Washington The Conservation Foundation The National Museum of Natural History The Smithsonian Institution MEREDITH L. JONES, Editor September 28, 1972 CONTENTS Foreword The Editor - - - - - - - - - - Introduction Meredith L. Jones ____________ vi A Tribute to Waldo Lasalle Schmitt George A. Llano 1 Background for a New, Sea-Level, Panama Canal David Challinor - - - - - - - - - - - Observations on the Ecology of the Caribbean and Pacific Coasts of Panama - - - - Peter W. Glynn _ 13 Physical Characteristics of the Proposed Sea-Level Isthmian Canal John P. Sheffey - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 31 Exchange of Water through the Proposed Sea-Level Canal at Panama Donald R. F. Harleman - - - - - - - - - - - - - - - - - - - - - - - - - - - 41 Biological Results of the University of Miami Deep-Sea Expeditions. 93. Comments Concerning the University of Miami's Marine Biological Survey Related to the Panamanian Sea-Level Canal Gilbert L. Voss - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 49 Museums as Environmental Data Banks: Curatorial Problems Posed by an Extensive Biological Survey Richard S. Cowan - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 59 A Review of the Marine Plants of Panama Sylvia A. Earle - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 69 Ecology and Species Diversity of -
Sea Urchins As an Inspiration for Robotic Designs
Sea urchins as an inspiration for robotic designs Article Published Version Creative Commons: Attribution 4.0 (CC-BY) Open Access Stiefel, K. and Barrett, G. (2018) Sea urchins as an inspiration for robotic designs. Journal of Marine Science and Engineering, 6 (4). 112. ISSN 2077-1312 doi: https://doi.org/10.3390/jmse6040112 Available at http://centaur.reading.ac.uk/79763/ It is advisable to refer to the publisher’s version if you intend to cite from the work. See Guidance on citing . To link to this article DOI: http://dx.doi.org/10.3390/jmse6040112 Publisher: MDPI All outputs in CentAUR are protected by Intellectual Property Rights law, including copyright law. Copyright and IPR is retained by the creators or other copyright holders. Terms and conditions for use of this material are defined in the End User Agreement . www.reading.ac.uk/centaur CentAUR Central Archive at the University of Reading Reading’s research outputs online Journal of Marine Science and Engineering Review Sea Urchins as an Inspiration for Robotic Designs Klaus M. Stiefel 1,2,3 and Glyn A. Barrett 3,4,* 1 Neurolinx Research Institute, La Jolla, CA 92039, USA; [email protected] 2 Marine Science Institute, University of the Philippines, Dilliman, Quezon City 1101, Philippines 3 People and the Sea, Malapascua, Daanbantayan, Cebu 6000, Philippines 4 School of Biological Sciences, University of Reading, Reading RG6 6UR, UK * Correspondence: [email protected]; Tel.: +44-(0)-118-378-8893 Received: 25 August 2018; Accepted: 4 October 2018; Published: 10 October 2018 Abstract: Neuromorphic engineering is the approach to intelligent machine design inspired by nature.