Article Microbial Composition and Genes for Key Metabolic Attributes in the Gut Digesta of Sea Urchins Lytechinus variegatus and Strongylocentrotus purpuratus Using Shotgun Metagenomics Joseph A. Hakim 1,†, George B. H. Green 1, Stephen A. Watts 1, Michael R. Crowley 2, Casey D. Morrow 3,* and Asim K. Bej 1,* 1 Department of Biology, The University of Alabama at Birmingham, 1300 University Blvd., Birmingham, AL 35294, USA;
[email protected] (J.A.H.);
[email protected] (G.B.H.G.);
[email protected] (S.A.W.) 2 Department of Genetics, Heflin Center Genomics Core, School of Medicine, The University of Alabama at Birmingham, 705 South 20th Street, Birmingham, AL 35294, USA;
[email protected] 3 Department of Cell, Developmental and Integrative Biology, The University of Alabama at Birmingham, 1918 University Blvd., Birmingham, AL 35294, USA * Correspondence:
[email protected] (C.D.M.);
[email protected] (A.K.B.); Tel.: +1-205-934-5705 (C.D.M.); +1-205-934-9857 (A.K.B.) † Current Address: School of Medicine (M.D.), The University of Alabama at Birmingham, 1670 University Blvd, Birmingham, AL 35233, USA. Abstract: This paper describes the microbial community composition and genes for key metabolic genes, particularly the nitrogen fixation of the mucous-enveloped gut digesta of green (Lytechinus variegatus) and purple (Strongylocentrotus purpuratus) sea urchins by using the shotgun metagenomics Citation: Hakim, J.A.; Green, G.B.H.; approach. Both green and purple urchins showed high relative abundances of Gammaproteobacteria Watts, S.A.; Crowley, M.R.; Morrow, at 30% and 60%, respectively. However, Alphaproteobacteria in the green urchins had higher relative C.D.; Bej, A.K.