Allelic Variation of the FRMD7 Gene in Congenital Idiopathic Nystagmus

Total Page:16

File Type:pdf, Size:1020Kb

Allelic Variation of the FRMD7 Gene in Congenital Idiopathic Nystagmus OPHTHALMIC MOLECULAR GENETICS SECTION EDITOR: JANEY L. WIGGS, MD, PhD Allelic Variation of the FRMD7 Gene in Congenital Idiopathic Nystagmus James E. Self, BM, MRCOphth; Fatima Shawkat, PhD; Crispin T. Malpas, BM, MRCOphth; N. Simon Thomas, PhD; Christopher M. Harris, PhD; Peter R. Hodgkins, FRCOphth; Xiaoli Chen, BSc; Dorothy Trump, MD, FRCP; Andrew J. Lotery, MD, FRCOphth Objectives: To perform a genotype-phenotype corre- onstrated no clear causal link between skewing and vari- lation study in an X-linked congenital idiopathic nystag- able penetrance. mus pedigree (pedigree 1) and to assess the allelic vari- ance of the FRMD7 gene in congenital idiopathic Conclusions: We confirm profound phenotypic varia- nystagmus. tion in X-linked congenital idiopathic nystagmus pedi- grees. We demonstrate that other congenital nystagmus Methods: Subjects from pedigree 1 underwent de- genes exist besides FRMD7. We show that the role of X tailed clinical examination including nystagmology. inactivation in variable penetrance is unclear in congen- Screening of FRMD7 was undertaken in pedigree 1 and ital idiopathic nystagmus. in 37 other congenital idiopathic nystagmus probands and controls. Direct sequencing confirmed sequence Clinical Relevance: We demonstrate that phenotypic changes. X-inactivation studies were performed in variation of nystagmus occurs in families with FRMD7 pedigree 1. mutations. While FRMD7 mutations may be found in some cases of X-linked congenital idiopathic nystag- Results: The nystagmus phenotype was extremely vari- mus, the diagnostic yield is low. X-inactivation assays are able in pedigree 1. We identified 2 FRMD7 mutations. unhelpful as a test for carrier status for this disease. However, 80% of X-linked families and 96% of simplex cases showed no mutations. X-inactivation studies dem- Arch Ophthalmol. 2007;125(9):1255-1263 YSTAGMUS IS A DISORDER these pedigrees had causative FRMD7 mu- of oculomotor control tations. An additional 14 small pedigrees and can occur as an iso- with congenital idiopathic nystagmus and Author Affiliations: Clinical lated inherited trait, a an inheritance pattern consistent with X Neurosciences Division, congenital idiopathic linkage were screened and FRMD7 muta- University of Southampton Nnystagmus, or as secondary to other vi- tions were found in 8 of the pedigrees (Drs Self and Lotery and sual (sensory deficit nystagmus) or neu- (57%). Forty-two simplex cases were Ms Chen), and Southampton rological (neurological nystagmus) dis- screened for mutations in this gene and Eye Unit, Southampton General eases.1 In all cases, the underlying yielded 3 mutations (7%). Therefore, the Hospital (Drs Self, Shawkat, pathophysiology is poorly understood. overall contribution of FRMD7 mutations Malpas, Hodgkins, and Lotery), Furthermore, it is unclear which charac- to the cause of both X-linked and single- Southampton, England; Wessex Regional Genetics Laboratory, teristics of the nystagmus phenotype, if ton cases remains relatively unexplored. Salisbury District Hospital, any, are reliable as a diagnostic tool to help In X-linked congenital idiopathic nys- Salisbury, England identify underlying etiology. tagmus pedigrees, penetrance among fe- (Dr Thomas); SensoriMotor Congenital idiopathic nystagmus is ge- male obligate carriers has been vari- Laboratory, Centre for netically heterogeneous and has been de- able,3-5,7 ranging from 30% to 100%. Theoretical and Computational scribed as an autosomal dominant,2 auto- Possible mechanisms for this variability in- Neuroscience, University of somal recessive,3 X-linked dominant,3 or clude skewed X inactivation, genetic modi- Plymouth, Plymouth, England X-linked recessive4 trait. X-linked loci have fiers (such as polymorphisms within in- (Dr Harris); and Academic Unit been identified at Xp11.4-p11.34 and Xq26- teracting proteins), and other nongenetic of Medical Genetics, School of q27.3,5 In November 2006, Tarpey et al6 influences (such as environment) on ocu- Medicine and Centre for Molecular Medicine, Faculty of identified 22 nystagmus-causing muta- lomotor development. These factors may Medical and Human Sciences, tions in the FERM domain–containing 7 also explain why X-linked dominant and University of Manchester, (FRMD7) gene, which resides within the recessive pedigrees, with nystagmus or Manchester, England Xq26-q27 interval. Sixteen X-linked fami- other ocular diseases, can both show link- (Dr Trump). lies underwent linkage analysis and 15 of age to the same region.5,8,9 (REPRINTED) ARCH OPHTHALMOL / VOL 125 (NO. 9), SEP 2007 WWW.ARCHOPHTHALMOL.COM 1255 ©2007 American Medical Association. All rights reserved. Downloaded From: https://jamanetwork.com/ on 09/29/2021 I:1 I:2 II:1 II:2 II:3 II:4 II:5 II:6 II:7 II:8 III:1 III:2 III:3 III:4 III:5 III:6 III:7 III:8 III:9 III:10 III:11 III:12 III:13 III:14 III:15 III:16 III:17 III:18 III:19 III:20 IV:1 IV:2 IV:3 IV:4 IV:5 IV:6 IV:7 IV:8 IV:9 IV:10 IV:11 IV:12 IV:13 IV:14 IV:15 IV:16 IV:17 IV:18 IV:19 IV:20 IV:21 IV:22 IV:23 IV:24 IV:25 Underwent detailed phenotyping Unaffected male Affected male Unaffected female Affected female Obligate female carrier V:1 V:2 V:3 V:4 V:5 V:6 V:7 V:8 V:9 V:10 V:11 Figure 1. X-linked congenital idiopathic nystagmus pedigree (pedigree 1). This family has 9 affected males, 2 affected females, and 11 obligate female carriers. This article describes high-resolution phenotyping electrophysiological examination but without detailed eye move- using infrared limbal tracking, electrophysiology, and ment recordings. clinical examination in affected and unaffected mem- International Society for Clinical Electrophysiology of Vision– bers of a single large congenital nystagmus pedigree (pedi- standardized electroretinogram (http://www.iscev.org/) and vi- sual evoked potential tests were completed in 2 affected males gree 1) (Figure 1). The role of FRMD7 mutations in 9 and 2 obligate female carriers. Monocular stimulation and a other X-linked families and 28 simplex cases is investi- 3-channel transoccipital electrode montage were employed for gated and, in addition, studies of X inactivation are per- visual evoked potential recordings to optimize detection of neu- formed to investigate the hypothesis that skewing of X ronal misrouting suggestive of ocular albinism. Informed con- inactivation may be a major contributor to the variable sent was obtained from all subjects for genetic studies, and ge- penetrance seen in X-linked nystagmus pedigrees. nomic DNA was isolated from either blood or Oragene saliva sample kits (DNA Genotek Inc, Ottawa, Ontario, Canada). METHODS GENOTYPING AND The study had the approval of the local and regional ethics LINKAGE ANALYSIS committees and conformed to the tenets of the Declaration of Helsinki. Twenty-nine individuals (7 affected males, 2 af- We had previously shown by conventional linkage mapping techniques that the nystagmus gene in pedigree 1 links to an fected females, 11 obligate female carriers, and 9 unaffected 5 members) in a single congenital idiopathic nystagmus pedi- 8-cM region at Xq24-q26.3. This contains the FRMD7 gene, gree underwent detailed clinical examination (Figure 1), in- which is now known to be a cause of X-linked nystagmus and cluding tests for logarithm of the minimum angle of resolu- was thus investigated in this family. DNA was amplified using tion visual acuity, refraction, color vision, intraocular standard polymerase chain reaction (PCR) protocols. Primers pressure; anterior and posterior segment slitlamp examina- for FRMD7 (complementary DNA sequence NM_194277) were designed to include all 12 exons, splice sites, and both the 5Ј tion, including iris transillumination testing in a darkened Ј room; and orthoptic assessment. Twenty-four of these pa- and 3 untranslated regions in amplimers with fewer than 250 tients had detailed recordings of their nystagmus waveform base pairs (primers available on request). Pedigrees 2 through performed using Skalar IRIS IR Light Eye Tracker equipment 10 were not large enough to provide linkage information in- (Cambridge Research Systems Ltd, Rochester, England). dividually, and to avoid errors in light of known X-linked con- Twenty-four eye movement recordings were completed for genital idiopathic nystagmus locus heterogeneity, these fami- each patient. Binocular and uniocular saccades were recorded lies were not combined. Therefore, linkage information was not to calibrate amplitude measurements at ±10° and ±20° from ascertained for these families and definitive proof of X linkage fixation in the horizontal plain using a 1° red square target was not possible. moving at 500-millisecond intervals. Binocular and uniocular optokinetic nystagmus (OKN) measurements were carried SINGLE-STRAND CONFORMATIONAL out to rightward and leftward drifting gratings measuring 0.2 POLYMORPHISM ANALYSIS cycles per degree at a velocity of 25° per second. Waveforms were analyzed while viewed in 5 positions (primary, 10° right, Single-strand conformational polymorphism (SSCP) was per- 10° left, 20° right, and 20° left of fixation), both binocularly formed using standard techniques.10 Specifically, polyacryl- and uniocularly using a 1° red square target. amide gels with glycerol, 6%, were run for 3.5 hours at 25 W An additional 9 congenital idiopathic nystagmus pedigrees per gel at room temperature. We screened for sequence varia- with inheritance consistent with X linkage were identified tions in 96 female controls (182 control X chromosomes), fol- (Figure 2). These pedigrees had similarly detailed clinical and lowed by 2 affected subjects from the first pedigree, 9 pro- (REPRINTED) ARCH OPHTHALMOL / VOL 125 (NO. 9), SEP 2007 WWW.ARCHOPHTHALMOL.COM 1256 ©2007 American Medical Association. All rights reserved. Downloaded From: https://jamanetwork.com/ on 09/29/2021 Pedigree 2 Pedigree 3 Pedigree 4 Pedigree 5 Pedigree 6 Pedigree 7 Pedigree 8 Affected male Unaffected male Affected female Unaffected female Obligate female carrier Pedigree 9 Pedigree 10 Figure 2. Nine additional pedigrees screened for FRMD7 mutations. bands from other X-linked nystagmus pedigrees, and 28 cuts at the promoter site on the active (unmethylated) but not nystagmus simplex cases.
Recommended publications
  • A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
    Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated.
    [Show full text]
  • The Role of Cdep in the Embryonic Morphogenesis of Drosophila Melanogaster
    The Role of Cdep in the Embryonic Morphogenesis of Drosophila melanogaster Dissertation zur Erlangung des akademischen Grades Doctor rerum naturalium (Dr. rer.nat.) vorgelegt der Fakultät Mathematik und Naturwissenschaften der Technischen Universität Dresden von Anne Morbach Geboren am 05. August 1984 in Nordhausen, Deutschland Eingereicht am 30. Oktober 2015 Die Dissertation wurde in der Zeit von April 2012 bis Oktober 2015 im Max-Planck-Institut für molekulare Zellbiologie und Genetik angefertigt Gutachter: Prof. Dr. Elisabeth Knust Prof. Dr. Christian Dahmann Now, here, you see, it takes all the running you can do, to keep in the same place. Lewis Carroll, Through the Looking-Glass I Contents List of Figures V List of Tables VII Abstract IX List of Abbreviations XI 1 Introduction 1 1.1 Epithelial cell polarity . 1 1.1.1 Cellularization and formation of the primary epithelium . 1 1.1.1.1 Establishment of epithelial polarity and adhesion . 2 1.1.2 The epithelial polarity network . 3 1.1.3 Cell-cell adhesion . 5 1.1.3.1 Adherens junctions . 5 1.1.3.2 Septate junctions . 6 1.2 Epithelial movements in Drosophila embryonic morphogenesis . 6 1.2.1 Epithelial tube formation during Drosophila embryogenesis . 7 1.2.2 Coordinated migration of epithelial sheets during Dros. embryogenesis 7 1.2.2.1 FERM domain proteins in epithelial migration . 9 1.2.2.2 Cdep . 10 1.3 Mutagenesis with the CRISPR/Cas9 system . 12 2 Aim of My PhD Thesis Work 15 3 Preliminary Work 17 4 Results 19 4.1 A screen for novel regulators in Drosophila embryonic morphogenesis .
    [Show full text]
  • Modular and Distinct Plexin-A4/FARP2/Rac1 Signaling Controls Dendrite Morphogenesis
    The Journal of Neuroscience, July 8, 2020 • 40(28):5413–5430 • 5413 Development/Plasticity/Repair Modular and Distinct Plexin-A4/FARP2/Rac1 Signaling Controls Dendrite Morphogenesis Victor Danelon,1* Ron Goldner,2* Edward Martinez,1 Irena Gokhman,2 Kimberly Wang,1 Avraham Yaron,2 and Tracy S. Tran1 1Department of Biological Sciences, Rutgers University, Newark, New Jersey 07102, and 2Department of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, 76100, Israel Diverse neuronal populations with distinct cellular morphologies coordinate the complex function of the nervous system. Establishment of distinct neuronal morphologies critically depends on signaling pathways that control axonal and dendritic devel- opment. The Sema3A-Nrp1/PlxnA4 signaling pathway promotes cortical neuron basal dendrite arborization but also repels axons. However, the downstream signaling components underlying these disparate functions of Sema3A signaling are unclear. Using the KRK-AAA novel PlxnA4 knock-in male and female mice, generated by CRISPR/cas9, we show here that the KRK motif in the PlxnA4 cytoplasmic domain is required for Sema3A-mediated cortical neuron dendritic elaboration but is dispensable for inhibitory axon guidance. The RhoGEF FARP2, which binds to the KRK motif, shows identical functional specificity as the KRK motif in the PlxnA4 receptor. We find that Sema3A activates the small GTPase Rac1, and that Rac1 activity is required for dendrite elaboration but not axon growth cone collapse. This work identifies a novel Sema3A-Nrp1/PlxnA4/FARP2/Rac1 signaling pathway that specifi- cally controls dendritic morphogenesis but is dispensable for repulsive guidance events. Overall, our results demonstrate that the divergent signaling output from multifunctional receptor complexes critically depends on distinct signaling motifs, highlighting the modular nature of guidance cue receptors and its potential to regulate diverse cellular responses.
    [Show full text]
  • A Draft Map of the Human Proteome
    ARTICLE doi:10.1038/nature13302 A draft map of the human proteome Min-Sik Kim1,2, Sneha M. Pinto3, Derese Getnet1,4, Raja Sekhar Nirujogi3, Srikanth S. Manda3, Raghothama Chaerkady1,2, Anil K. Madugundu3, Dhanashree S. Kelkar3, Ruth Isserlin5, Shobhit Jain5, Joji K. Thomas3, Babylakshmi Muthusamy3, Pamela Leal-Rojas1,6, Praveen Kumar3, Nandini A. Sahasrabuddhe3, Lavanya Balakrishnan3, Jayshree Advani3, Bijesh George3, Santosh Renuse3, Lakshmi Dhevi N. Selvan3, Arun H. Patil3, Vishalakshi Nanjappa3, Aneesha Radhakrishnan3, Samarjeet Prasad1, Tejaswini Subbannayya3, Rajesh Raju3, Manish Kumar3, Sreelakshmi K. Sreenivasamurthy3, Arivusudar Marimuthu3, Gajanan J. Sathe3, Sandip Chavan3, Keshava K. Datta3, Yashwanth Subbannayya3, Apeksha Sahu3, Soujanya D. Yelamanchi3, Savita Jayaram3, Pavithra Rajagopalan3, Jyoti Sharma3, Krishna R. Murthy3, Nazia Syed3, Renu Goel3, Aafaque A. Khan3, Sartaj Ahmad3, Gourav Dey3, Keshav Mudgal7, Aditi Chatterjee3, Tai-Chung Huang1, Jun Zhong1, Xinyan Wu1,2, Patrick G. Shaw1, Donald Freed1, Muhammad S. Zahari2, Kanchan K. Mukherjee8, Subramanian Shankar9, Anita Mahadevan10,11, Henry Lam12, Christopher J. Mitchell1, Susarla Krishna Shankar10,11, Parthasarathy Satishchandra13, John T. Schroeder14, Ravi Sirdeshmukh3, Anirban Maitra15,16, Steven D. Leach1,17, Charles G. Drake16,18, Marc K. Halushka15, T. S. Keshava Prasad3, Ralph H. Hruban15,16, Candace L. Kerr19{, Gary D. Bader5, Christine A. Iacobuzio-Donahue15,16,17, Harsha Gowda3 & Akhilesh Pandey1,2,3,4,15,16,20 The availability of human genome sequence has transformed biomedical research over the past decade. However, an equiv- alent map for the human proteome with direct measurements of proteins and peptides does not exist yet. Here we present a draft map of the human proteome using high-resolution Fourier-transform mass spectrometry.
    [Show full text]
  • MAP17's Up-Regulation, a Crosspoint in Cancer and Inflammatory
    García-Heredia and Carnero Molecular Cancer (2018) 17:80 https://doi.org/10.1186/s12943-018-0828-7 REVIEW Open Access Dr. Jekyll and Mr. Hyde: MAP17’s up- regulation, a crosspoint in cancer and inflammatory diseases José M. García-Heredia1,2,3 and Amancio Carnero1,3* Abstract Inflammation is a common defensive response that is activated after different harmful stimuli. This chronic, or pathological, inflammation is also one of the causes of neoplastic transformation and cancer development. MAP17 is a small protein localized to membranes with a restricted pattern of expression in adult tissues. However, its expression is common in destabilized cells, as it is overexpressed both in inflammatory diseases and in cancer. MAP17 is overexpressed in most, if not all, carcinomas and in many tumors of mesenchymal origin, and correlates with higher grade and poorly differentiated tumors. This overexpression drives deep changes in cell homeostasis including increased oxidative stress, deregulation of signaling pathways and increased growth rates. Importantly, MAP17 is associated in tumors with inflammatory cells infiltration, not only in cancer but in various inflammatory diseases such as Barret’s esophagus, lupus, Crohn’s, psoriasis and COPD. Furthermore, MAP17 also modifies the expression of genes connected to inflammation, showing a clear induction of the inflammatory profile. Since MAP17 appears highly correlated with the infiltration of inflammatory cells in cancer, is MAP17 overexpression an important cellular event connecting tumorigenesis and inflammation? Keywords: MAP17, Cancer, Inflammatory diseases Background process ends when the activated cells undergo apoptosis in Inflammatory response is a common defensive process acti- a highly regulated process that finishes after pathogens and vated after different harmful stimuli, constituting a highly cell debris have been phagocytized [9].
    [Show full text]
  • Genome-Wide DNA Methylation Dynamics During Epigenetic
    Gómez‑Redondo et al. Clin Epigenet (2021) 13:27 https://doi.org/10.1186/s13148‑021‑01003‑x RESEARCH Open Access Genome‑wide DNA methylation dynamics during epigenetic reprogramming in the porcine germline Isabel Gómez‑Redondo1*† , Benjamín Planells1†, Sebastián Cánovas2,3, Elena Ivanova4, Gavin Kelsey4,5 and Alfonso Gutiérrez‑Adán1 Abstract Background: Prior work in mice has shown that some retrotransposed elements remain substantially methylated during DNA methylation reprogramming of germ cells. In the pig, however, information about this process is scarce. The present study was designed to examine the methylation profles of porcine germ cells during the time course of epigenetic reprogramming. Results: Sows were artifcially inseminated, and their fetuses were collected 28, 32, 36, 39, and 42 days later. At each time point, genital ridges were dissected from the mesonephros and germ cells were isolated through magnetic‑ activated cell sorting using an anti‑SSEA‑1 antibody, and recovered germ cells were subjected to whole‑genome bisulphite sequencing. Methylation levels were quantifed using SeqMonk software by performing an unbiased analysis, and persistently methylated regions (PMRs) in each sex were determined to extract those regions showing 50% or more methylation. Most genomic elements underwent a dramatic loss of methylation from day 28 to day 36, when the lowest levels were shown. By day 42, there was evidence for the initiation of genomic re‑methylation. We identifed a total of 1456 and 1122 PMRs in male and female germ cells, respectively, and large numbers of transpos‑ able elements (SINEs, LINEs, and LTRs) were found to be located within these PMRs. Twenty‑one percent of the introns located in these PMRs were found to be the frst introns of a gene, suggesting their regulatory role in the expression of these genes.
    [Show full text]
  • Genome-Wide Detection of Natural Selection in African Americans Pre- and Post-Admixture
    Downloaded from genome.cshlp.org on September 29, 2021 - Published by Cold Spring Harbor Laboratory Press Method Genome-wide detection of natural selection in African Americans pre- and post-admixture Wenfei Jin,1 Shuhua Xu,1,6 Haifeng Wang,2 Yongguo Yu,3 Yiping Shen,4,5 Bailin Wu,4,5 and Li Jin1,4,6 1Chinese Academy of Sciences Key Laboratory of Computational Biology, Chinese Academy of Sciences and Max Planck Society (CAS-MPG) Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China; 2Chinese National Human Genome Center, Shanghai 201203, China; 3Shanghai Children’s Medical Center, Shanghai Jiaotong University School of Medicine, Shanghai 200127, China; 4Ministry of Education (MOE) Key Laboratory of Contemporary Anthropology, School of Life Sciences and Institutes of Biomedical Sciences, Fudan University, Shanghai 200433, China; 5Children’s Hospital Boston, Harvard Medical School, Boston, Massachusetts 02115, USA It is particularly meaningful to investigate natural selection in African Americans (AfA) due to the high mortality their African ancestry has experienced in history. In this study, we examined 491,526 autosomal single nucleotide poly- morphisms (SNPs) genotyped in 5210 individuals and conducted a genome-wide search for selection signals in 1890 AfA. Several genomic regions showing an excess of African or European ancestry, which were considered the footprints of selection since population admixture, were detected based on a commonly used approach. However, we also developed a new strategy to detect natural selection both pre- and post-admixture by reconstructing an ancestral African population (AAF) from inferred African components of ancestry in AfA and comparing it with indigenous African populations (IAF).
    [Show full text]
  • Egfr Activates a Taz-Driven Oncogenic Program in Glioblastoma
    EGFR ACTIVATES A TAZ-DRIVEN ONCOGENIC PROGRAM IN GLIOBLASTOMA by Minling Gao A thesis submitted to Johns Hopkins University in conformity with the requirements for the degree of Doctor of Philosophy Baltimore, Maryland March 2020 ©2020 Minling Gao All rights reserved Abstract Hyperactivated EGFR signaling is associated with about 45% of Glioblastoma (GBM), the most aggressive and lethal primary brain tumor in humans. However, the oncogenic transcriptional events driven by EGFR are still incompletely understood. We studied the role of the transcription factor TAZ to better understand master transcriptional regulators in mediating the EGFR signaling pathway in GBM. The transcriptional coactivator with PDZ- binding motif (TAZ) and its paralog gene, the Yes-associated protein (YAP) are two transcriptional co-activators that play important roles in multiple cancer types and are regulated in a context-dependent manner by various upstream signaling pathways, e.g. the Hippo, WNT and GPCR signaling. In GBM cells, TAZ functions as an oncogene that drives mesenchymal transition and radioresistance. This thesis intends to broaden our understanding of EGFR signaling and TAZ regulation in GBM. In patient-derived GBM cell models, EGF induced TAZ and its known gene targets through EGFR and downstream tyrosine kinases (ERK1/2 and STAT3). In GBM cells with EGFRvIII, an EGF-independent and constitutively active mutation, TAZ showed EGF- independent hyperactivation when compared to EGFRvIII-negative cells. These results revealed a novel EGFR-TAZ signaling axis in GBM cells. The second contribution of this thesis is that we performed next-generation sequencing to establish the first genome-wide map of EGF-induced TAZ target genes.
    [Show full text]
  • Regulating Rac in the Nervous System: Molecular Function and Disease Implication of Rac Gefs and Gaps
    Hindawi Publishing Corporation BioMed Research International Volume 2015, Article ID 632450, 17 pages http://dx.doi.org/10.1155/2015/632450 Review Article Regulating Rac in the Nervous System: Molecular Function and Disease Implication of Rac GEFs and GAPs Yanyang Bai, Xiaoliang Xiang, Chunmei Liang, and Lei Shi JNU-HKUST Joint Laboratory for Neuroscience and Innovative Drug Research, Jinan University, Guangzhou, Guangdong 510632, China Correspondence should be addressed to Lei Shi; [email protected] Received 23 January 2015; Accepted 6 March 2015 Academic Editor: Akito Tanoue Copyright © 2015 Yanyang Bai et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Rho family GTPases, including RhoA, Rac1, and Cdc42 as the most studied members, are master regulators of actin cytoskeletal organization. Rho GTPases control various aspects of the nervous system and are associated with a number of neuropsychiatric and neurodegenerative diseases. The activity of Rho GTPases is controlled by two families of regulators, guanine nucleotide exchange factors (GEFs) as the activators and GTPase-activating proteins (GAPs) as the inhibitors. Through coordinated regulation by GEFs and GAPs, Rho GTPases act as converging signaling molecules that convey different upstream signals in the nervous system. So far,morethan70membersofeitherGEFsorGAPsofRhoGTPaseshavebeenidentifiedinmammals,butonlyasmallsubset of them have well-known functions. Thus, characterization of important GEFs and GAPs in the nervous system is crucial for the understanding of spatiotemporal dynamics of Rho GTPase activity in different neuronal functions. In this review, we summarize the current understanding of GEFs and GAPs for Rac1, with emphasis on the molecular function and disease implication of these regulators in the nervous system.
    [Show full text]
  • Semaphorins in Adult Nervous System Plasticity and Disease
    fnsyn-13-672891 May 5, 2021 Time: 18:18 # 1 REVIEW published: 11 May 2021 doi: 10.3389/fnsyn.2021.672891 Semaphorins in Adult Nervous System Plasticity and Disease Daniela Carulli1,2*, Fred de Winter1 and Joost Verhaagen1 1 Laboratory for Neuroregeneration, Netherlands Institute for Neuroscience, Royal Academy of Arts and Sciences, Amsterdam, Netherlands, 2 Department of Neuroscience Rita Levi-Montalcini and Neuroscience Institute Cavalieri Ottolenghi, University of Turin, Turin, Italy Semaphorins, originally discovered as guidance cues for developing axons, are involved in many processes that shape the nervous system during development, from neuronal proliferation and migration to neuritogenesis and synapse formation. Interestingly, the expression of many Semaphorins persists after development. For instance, Semaphorin 3A is a component of perineuronal nets, the extracellular matrix structures enwrapping certain types of neurons in the adult CNS, which contribute to the closure of the critical period for plasticity. Semaphorin 3G and 4C play a crucial role in the control of adult hippocampal connectivity and memory processes, and Semaphorin 5A and 7A regulate adult neurogenesis. This evidence points to a role of Semaphorins in the regulation of adult neuronal plasticity. In this review, we address the distribution of Semaphorins in the adult nervous system and we discuss their function in physiological and pathological processes. Keywords: semaphorins, plasticity, perineuronal net, schizophrenia, epilepsy, Alzheimer’s disease, multiple sclerosis, autism Edited by: INTRODUCTION Juan Nacher, University of Valencia, Spain The development of complex tissues depends on proliferation, differentiation and migration of Reviewed by: cells. Cell guidance cues regulate these events and continue to be essential throughout life to Javier Gilabert-Juan, maintain tissue homeostasis.
    [Show full text]
  • Membrane and Protein Interactions of the Pleckstrin Homology Domain Superfamily
    Membranes 2015, 5, 646-663; doi:10.3390/membranes5040646 OPEN ACCESS membranes ISSN 2077-0375 www.mdpi.com/journal/membranes Article Membrane and Protein Interactions of the Pleckstrin Homology Domain Superfamily Marc Lenoir 1, Irina Kufareva 2, Ruben Abagyan 2, and Michael Overduin 3,* 1 School of Cancer Sciences, Faculty of Medical and Dental Sciences, University of Birmingham, Birmingham B15 2TT, UK; E-Mail: [email protected] 2 Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA; E-Mails: [email protected] (I.K.); [email protected] (R.A.) 3 Department of Biochemistry, Faculty of Medicine and Dentistry, University of Alberta, Edmonton, AB T6G 2H7, Canada * Author to whom correspondence should be addressed: E-Mail: [email protected]; Tel.: +1-780-492-3357; Fax: +1-780-492-0886. Academic Editor: Shiro Suetsugu Received: 15 September 2015 / Accepted: 16 October 2015 / Published: 23 October 2015 Abstract: The human genome encodes about 285 proteins that contain at least one annotated pleckstrin homology (PH) domain. As the first phosphoinositide binding module domain to be discovered, the PH domain recruits diverse protein architectures to cellular membranes. PH domains constitute one of the largest protein superfamilies, and have diverged to regulate many different signaling proteins and modules such as Dbl homology (DH) and Tec homology (TH) domains. The ligands of approximately 70 PH domains have been validated by binding assays and complexed structures, allowing meaningful extrapolation across the entire superfamily. Here the Membrane Optimal Docking Area (MODA) program is used at a genome-wide level to identify all membrane docking PH structures and map their lipid-binding determinants.
    [Show full text]
  • The 2Q37-Deletion Syndrome: an Update of the Clinical Spectrum Including Overweight, Brachydactyly and Behavioural Features in 14 New Patients
    European Journal of Human Genetics (2013) 21, 602–612 & 2013 Macmillan Publishers Limited All rights reserved 1018-4813/13 www.nature.com/ejhg ARTICLE The 2q37-deletion syndrome: an update of the clinical spectrum including overweight, brachydactyly and behavioural features in 14 new patients Camille Leroy1,2,3, Emilie Landais1,2,4, Sylvain Briault5, Albert David6, Olivier Tassy7, Nicolas Gruchy8, Bruno Delobel9, Marie-Jose´ Gre´goire10, Bruno Leheup3,11, Laurence Taine12, Didier Lacombe12, Marie-Ange Delrue12, Annick Toutain13, Agathe Paubel13, Francine Mugneret14, Christel Thauvin-Robinet3,15, Ste´phanie Arpin13, Cedric Le Caignec6, Philippe Jonveaux3,10, Myle`ne Beri10, Nathalie Leporrier8, Jacques Motte16, Caroline Fiquet17,18, Olivier Brichet16, Monique Mozelle-Nivoix1,3, Pascal Sabouraud16, Nathalie Golovkine19, Nathalie Bednarek20, Dominique Gaillard1,2,3 and Martine Doco-Fenzy*,1,2,3,18 The 2q37 locus is one of the most commonly deleted subtelomeric regions. Such a deletion has been identified in 4100 patients by telomeric fluorescence in situ hybridization (FISH) analysis and, less frequently, by array-based comparative genomic hybridization (array-CGH). A recognizable ‘2q37-deletion syndrome’ or Albright’s hereditary osteodystrophy-like syndrome has been previously described. To better map the deletion and further refine this deletional syndrome, we formed a collaboration with the Association of French Language Cytogeneticists to collect 14 new intellectually deficient patients with a distal or interstitial 2q37 deletion characterized by FISH and array-CGH. Patients exhibited facial dysmorphism (13/14) and brachydactyly (10/14), associated with behavioural problems, autism or autism spectrum disorders of varying severity and overweight or obesity. The deletions in these 14 new patients measured from 2.6 to 8.8 Mb.
    [Show full text]