Silicon Dioxide Nanoparticles Induced Neurobehavioral Impairments By

Total Page:16

File Type:pdf, Size:1020Kb

Silicon Dioxide Nanoparticles Induced Neurobehavioral Impairments By Diao et al. J Nanobiotechnol (2021) 19:174 https://doi.org/10.1186/s12951-021-00916-2 Journal of Nanobiotechnology RESEARCH Open Access Silicon dioxide nanoparticles induced neurobehavioral impairments by disrupting microbiota–gut–brain axis Jun Diao1†, Yinyin Xia1†, Xuejun Jiang2†, Jingfu Qiu3, Shuqun Cheng1, Junhao Su3, Xinhao Duan3, Min Gao3, Xia Qin4, Jun Zhang5, Jingchuan Fan5, Zhen Zou5,6* and Chengzhi Chen1,6* Abstract Background: Silicon dioxide nanoparticles (SiO2NPs) are widely used as additive in the food industry with contro- versial health risk. Gut microbiota is a new and hot topic in the feld of nanotoxicity. It also contributes a novel and insightful view to understand the potential health risk of food-grade SiO2NPs in children, who are susceptible to the toxic efects of nanoparticles. Methods: In current study, the young mice were orally administrated with vehicle or SiO2NPs solution for 28 days. The efects of SiO2NPs on the gut microbiota were detected by 16S ribosomal RNA (rRNA) gene sequencing, and the neurobehavioral functions were evaluated by open feld test and Morris water maze. The level of infammation, tissue integrity of gut and the classical indicators involved in gut–brain, gut–liver and gut–lung axis were all assessed. Results: Our results demonstrated that SiO2NPs signifcantly caused the spatial learning and memory impair- ments and locomotor inhibition. Although SiO2NPs did not trigger evident intestinal or neuronal infammation, they remarkably damaged the tissue integrity. The microbial diversity within the gut was unexpectedly enhanced in SiO2NPs-treated mice, mainly manifested by the increased abundances of Firmicutes and Patescibacteria. Intriguingly, we demonstrated for the frst time that the neurobehavioral impairments and brain damages induced by SiO2NPs might be distinctively associated with the disruption of gut–brain axis by specifc chemical substances originated from gut, such as Vipr1 and Sstr2. Unapparent changes in liver or lung tissues further suggested the absence of gut– liver axis or gut–lung axis regulation upon oral SiO2NPs exposure. Conclusion: This study provides a novel idea that the SiO2NPs induced neurotoxic efects may occur through dis- tinctive gut–brain axis, showing no signifcant impact on either gut–lung axis or gut–liver axis. These fndings raise the exciting prospect that maintenance and coordination of gastrointestinal functions may be critical for protection against the neurotoxicity of infant foodborne SiO2NPs. Keywords: Silicon dioxide nanoparticles, Gut–brain axis, Gut microbiota, Neurobehavioral impairments Introduction *Correspondence: [email protected]; [email protected] †Jun Diao, Yinyin Xia and Xuejun Jiang contributed equally to this work Silicon dioxide (SiO 2) is a natural chemical that most 1 Department of Occupational and Environmental Health, School widely used in structural materials, microelectronics, and of Public Health and Management, Chongqing Medical University, Chongqing 400016, People’s Republic of China as components in the food industry for various applica- 5 Molecular Biology Laboratory of Respiratory Disease, Institute of Life tions [1–4]. Te amorphous form of SiO 2, also known Sciences, Chongqing Medical University, Chongqing 400016, People’s as synthetic amorphous silica (SAS), is authorized as a Republic of China Full list of author information is available at the end of the article food additive coded E551 [3, 5]. It usually functions as © The Author(s) 2021. This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http:// creat iveco mmons. org/ licen ses/ by/4. 0/. The Creative Commons Public Domain Dedication waiver (http:// creat iveco mmons. org/ publi cdoma in/ zero/1. 0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. Diao et al. J Nanobiotechnol (2021) 19:174 Page 2 of 20 an anti-caking agent to maintain free-fowing properties [26]. In cultured neuroblastoma SH-SY5Y cells, treat- of powdery products, preserve food color during stor- ment of SiO2NPs causes deleterious efects on tau struc- age, and carry fragrances or favors. It is noteworthy that ture and cell integrity [27]. Tese results are verifed in SiO2 can exist in various particle sizes in the food addi- other type of neuronal cells, showing that exposure to tive depending on the manufacturing process [6]. For SiO2NPs induces pathological signs of Alzheimer’s dis- instance, the sizes of SiO 2 in the E551 contains primary ease, such as changed expression of amyloid precursor particles in the nano-size range, and most of the particles protein, increased phosphorylation of tau in neuro2a are normally greater than 100 nm. However, under the neuroblastoma cells [28]. Te evidence obtained from conditions present in the gastrointestinal tract, SiO2 par- cultured cells and animals together suggest that expo- ticles are capable of clumping together and subsequently sure to SiO2NPs can trigger neurotoxic efects and may degrading into small size particles, many of which are be considered as a risk factor facilitating the neurological nanoparticles with size less than 100 nm, approximately disorders onset and/or progression. Terefore, currently, 10–50 nm in size [3, 7, 8]. Te nano-size SiO2 in the E551 increasing concerns have been raised over the potential may have a completely diferent infuence on the uptake neurotoxicity of SiO2NPs on human health due to their and distribution of SiO2 within the body [4]. Although extensively use as food additive. However, whether oral SiO2 is used as a classical food additive for a long history exposure to SiO 2NPs may induce neurotoxic efects and without any detrimental health efects, the safety con- their underlying mechanisms remain largely unknown. cerns should be still paid on the potential health risks for Oral uptake is considered as the major route of expo- humans associated with nanoparticles in E551. sure to SiO 2NPs for general population [3, 6, 11]. Fol- Te potential toxic efects of nano-size SiO2 have been lowing ingestion, SiO 2NPs interact with the complex extensively studied for years [3, 4, 9, 10]. Despite these gastrointestinal microenvironment. Tey are able to nanoparticles are generally considered less harmful in accumulate in the gastrointestinal tract as a result of daily the past decade, excessive exposure to SiO2 nanoparticles consumption and afect the gut microbiota and mucus (SiO2NPs) has been recently reported to cause injuries layer directly [6]. A portion of SiO2NPs possibly show a to cells, tissues, and organs in vitro and in vivo [10–12]. signifcant impact on the enteric neurons when trans- Most of in vitro studies demonstrate that SiO2NPs are locating through the epithelial barrier, before reaching able to induce size-, shape- and dose-dependent cyto- systemic circulation [6]. It has been noted that the gut toxic efects in cultured human cell lines, such as glio- microbiota plays a critical role in the regulation of brain blastoma cells [13], A549 cells [14] and BEAS-2B cells functions as indispensable substrate for host health. Te [15] etc. Evidence from scarce in vivo investigations imbalance of intestinal microbial ecosystem may strongly illustrate that consumption of very large quantities of contribute to the neurobehavioral impairments via bidi- SiO2NPs can result in adverse efects in liver, kidney, rectional gut–brain communication [29]. Many neuro- and lung of animals [11, 16, 17]. Notably, if SiO 2NPs are logical diseases are closely related with changes along the injected directly into the bloodstream, even small quanti- microbiota–gut–brain axis, such as Alzheimer’s disease ties are harmful for the experimental animals [3, 11, 18, [30] and Parkinson’s disease [31]. However, whether oral 19]. Inhalation exposure to SiO2NPs is highly associated exposure to SiO2NPs facilitates the onset of neurologi- with human health, especially occurs in occupational cal disorders via microbiota–gut–brain axis has not been environment [20]. Moreover, either inhaled or ingested reported yet. SiO2NPs can penetrate cells and interact with cellular Terefore, in this study, we aimed to verify if oral expo- membrane or organelles to trigger mammalian cell death sure of SiO2NPs induced neurobehavioral impairments by induction of oxidative stress, endoplasmic reticulum through disruption of microbiota–gut–brain axis. Since stress and apoptosis [21–23]. children were usually susceptible to the neurotoxic efects Studies have demonstrated that exposure to SiO 2NPs of exogenous chemicals, young animals were subjected leads to the observable efects on the alterations of behav- to intragastric administration of SiO 2NPs for 28 days. ioral phenotypes in zebrafsh, such as disturbance on Herein, our data demonstrated for the frst time that,
Recommended publications
  • WO 2018/064165 A2 (.Pdf)
    (12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (10) International Publication Number (43) International Publication Date WO 2018/064165 A2 05 April 2018 (05.04.2018) W !P O PCT (51) International Patent Classification: Published: A61K 35/74 (20 15.0 1) C12N 1/21 (2006 .01) — without international search report and to be republished (21) International Application Number: upon receipt of that report (Rule 48.2(g)) PCT/US2017/053717 — with sequence listing part of description (Rule 5.2(a)) (22) International Filing Date: 27 September 2017 (27.09.2017) (25) Filing Language: English (26) Publication Langi English (30) Priority Data: 62/400,372 27 September 2016 (27.09.2016) US 62/508,885 19 May 2017 (19.05.2017) US 62/557,566 12 September 2017 (12.09.2017) US (71) Applicant: BOARD OF REGENTS, THE UNIVERSI¬ TY OF TEXAS SYSTEM [US/US]; 210 West 7th St., Austin, TX 78701 (US). (72) Inventors: WARGO, Jennifer; 1814 Bissonnet St., Hous ton, TX 77005 (US). GOPALAKRISHNAN, Vanch- eswaran; 7900 Cambridge, Apt. 10-lb, Houston, TX 77054 (US). (74) Agent: BYRD, Marshall, P.; Parker Highlander PLLC, 1120 S. Capital Of Texas Highway, Bldg. One, Suite 200, Austin, TX 78746 (US). (81) Designated States (unless otherwise indicated, for every kind of national protection available): AE, AG, AL, AM, AO, AT, AU, AZ, BA, BB, BG, BH, BN, BR, BW, BY, BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DJ, DK, DM, DO, DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, HN, HR, HU, ID, IL, IN, IR, IS, JO, JP, KE, KG, KH, KN, KP, KR, KW, KZ, LA, LC, LK, LR, LS, LU, LY, MA, MD, ME, MG, MK, MN, MW, MX, MY, MZ, NA, NG, NI, NO, NZ, OM, PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, RW, SA, SC, SD, SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW.
    [Show full text]
  • Table S4. Phylogenetic Distribution of Bacterial and Archaea Genomes in Groups A, B, C, D, and X
    Table S4. Phylogenetic distribution of bacterial and archaea genomes in groups A, B, C, D, and X. Group A a: Total number of genomes in the taxon b: Number of group A genomes in the taxon c: Percentage of group A genomes in the taxon a b c cellular organisms 5007 2974 59.4 |__ Bacteria 4769 2935 61.5 | |__ Proteobacteria 1854 1570 84.7 | | |__ Gammaproteobacteria 711 631 88.7 | | | |__ Enterobacterales 112 97 86.6 | | | | |__ Enterobacteriaceae 41 32 78.0 | | | | | |__ unclassified Enterobacteriaceae 13 7 53.8 | | | | |__ Erwiniaceae 30 28 93.3 | | | | | |__ Erwinia 10 10 100.0 | | | | | |__ Buchnera 8 8 100.0 | | | | | | |__ Buchnera aphidicola 8 8 100.0 | | | | | |__ Pantoea 8 8 100.0 | | | | |__ Yersiniaceae 14 14 100.0 | | | | | |__ Serratia 8 8 100.0 | | | | |__ Morganellaceae 13 10 76.9 | | | | |__ Pectobacteriaceae 8 8 100.0 | | | |__ Alteromonadales 94 94 100.0 | | | | |__ Alteromonadaceae 34 34 100.0 | | | | | |__ Marinobacter 12 12 100.0 | | | | |__ Shewanellaceae 17 17 100.0 | | | | | |__ Shewanella 17 17 100.0 | | | | |__ Pseudoalteromonadaceae 16 16 100.0 | | | | | |__ Pseudoalteromonas 15 15 100.0 | | | | |__ Idiomarinaceae 9 9 100.0 | | | | | |__ Idiomarina 9 9 100.0 | | | | |__ Colwelliaceae 6 6 100.0 | | | |__ Pseudomonadales 81 81 100.0 | | | | |__ Moraxellaceae 41 41 100.0 | | | | | |__ Acinetobacter 25 25 100.0 | | | | | |__ Psychrobacter 8 8 100.0 | | | | | |__ Moraxella 6 6 100.0 | | | | |__ Pseudomonadaceae 40 40 100.0 | | | | | |__ Pseudomonas 38 38 100.0 | | | |__ Oceanospirillales 73 72 98.6 | | | | |__ Oceanospirillaceae
    [Show full text]
  • Extensive Microbial Diversity Within the Chicken Gut Microbiome Revealed by Metagenomics and Culture
    Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture Rachel Gilroy1, Anuradha Ravi1, Maria Getino2, Isabella Pursley2, Daniel L. Horton2, Nabil-Fareed Alikhan1, Dave Baker1, Karim Gharbi3, Neil Hall3,4, Mick Watson5, Evelien M. Adriaenssens1, Ebenezer Foster-Nyarko1, Sheikh Jarju6, Arss Secka7, Martin Antonio6, Aharon Oren8, Roy R. Chaudhuri9, Roberto La Ragione2, Falk Hildebrand1,3 and Mark J. Pallen1,2,4 1 Quadram Institute Bioscience, Norwich, UK 2 School of Veterinary Medicine, University of Surrey, Guildford, UK 3 Earlham Institute, Norwich Research Park, Norwich, UK 4 University of East Anglia, Norwich, UK 5 Roslin Institute, University of Edinburgh, Edinburgh, UK 6 Medical Research Council Unit The Gambia at the London School of Hygiene and Tropical Medicine, Atlantic Boulevard, Banjul, The Gambia 7 West Africa Livestock Innovation Centre, Banjul, The Gambia 8 Department of Plant and Environmental Sciences, The Alexander Silberman Institute of Life Sciences, Edmond J. Safra Campus, Hebrew University of Jerusalem, Jerusalem, Israel 9 Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, UK ABSTRACT Background: The chicken is the most abundant food animal in the world. However, despite its importance, the chicken gut microbiome remains largely undefined. Here, we exploit culture-independent and culture-dependent approaches to reveal extensive taxonomic diversity within this complex microbial community. Results: We performed metagenomic sequencing of fifty chicken faecal samples from Submitted 4 December 2020 two breeds and analysed these, alongside all (n = 582) relevant publicly available Accepted 22 January 2021 chicken metagenomes, to cluster over 20 million non-redundant genes and to Published 6 April 2021 construct over 5,500 metagenome-assembled bacterial genomes.
    [Show full text]
  • Table S5. the Information of the Bacteria Annotated in the Soil Community at Species Level
    Table S5. The information of the bacteria annotated in the soil community at species level No. Phylum Class Order Family Genus Species The number of contigs Abundance(%) 1 Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus 1749 5.145782459 2 Bacteroidetes Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter sedentarius 1538 4.52499338 3 Gemmatimonadetes Gemmatimonadetes Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonesis 1020 3.000970902 4 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas indica 797 2.344876284 5 Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus piscium 542 1.594633558 6 Actinobacteria Thermoleophilia Solirubrobacterales Conexibacteraceae Conexibacter Conexibacter woesei 471 1.385742446 7 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas taxi 430 1.265115184 8 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas wittichii 388 1.141545794 9 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. FARSPH 298 0.876754244 10 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sorangium cellulosum 260 0.764953367 11 Proteobacteria Deltaproteobacteria Myxococcales Polyangiaceae Sorangium Sphingomonas sp. Cra20 260 0.764953367 12 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas panacis 252 0.741416341
    [Show full text]
  • Neocallimastix Californiae G1 36,250,970 NA 29,649 95.52 85.2 SRX2598479 (3)
    Supplementary material for: Horizontal gene transfer as an indispensable driver for Neocallimastigomycota evolution into a distinct gut-dwelling fungal lineage 1 1 1 2 Chelsea L. Murphy ¶, Noha H. Youssef ¶, Radwa A. Hanafy , MB Couger , Jason E. Stajich3, Y. Wang3, Kristina Baker1, Sumit S. Dagar4, Gareth W. Griffith5, Ibrahim F. Farag1, TM Callaghan6, and Mostafa S. Elshahed1* Table S1. Validation of HGT-identification pipeline using previously published datasets. The frequency of HGT occurrence in the genomes of a filamentous ascomycete and a microsporidian were determined using our pipeline. The results were compared to previously published results. Organism NCBI Assembly Reference Method used Value Value accession number to original in the original reported obtained study study in this study Colletotrichum GCA_000149035.1 (1) Blast and tree 11 11 graminicola building approaches Encephalitozoon GCA_000277815.3 (2) Blast against 12-22 4 hellem custom database, AI score calculation, and tree building Table S2. Results of transcriptomic sequencing. Accession number Genus Species Strain Number of Assembled Predicted peptides % genome Ref. reads transcriptsa (Longest Orfs)b completenessc coveraged (%) Anaeromyces contortus C3G 33,374,692 50,577 22,187 96.55 GGWR00000000 This study Anaeromyces contortus C3J 54,320,879 57,658 26,052 97.24 GGWO00000000 This study Anaeromyces contortus G3G 43,154,980 52,929 21,681 91.38 GGWP00000000 This study Anaeromyces contortus Na 42,857,287 47,378 19,386 93.45 GGWN00000000 This study Anaeromyces contortus O2 60,442,723 62,300 27,322 96.9 GGWQ00000000 This study Anaeromyces robustus S4 21,955,935 NA 17,127 92.41 88.7 SRX3329608 (3) Caecomyces sp.
    [Show full text]
  • Anxiolytic Effects of a Galacto-Oligosaccharides Prebiotic in Healthy Female Volunteers 2 Are Associated with Reduced Negative Bias and the Gut Bacterial Composition
    medRxiv preprint doi: https://doi.org/10.1101/19011403; this version posted December 4, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license . 1 Anxiolytic effects of a galacto-oligosaccharides prebiotic in healthy female volunteers 2 are associated with reduced negative bias and the gut bacterial composition. 3 4 Nicola Johnstone1, Chiara Milesi1 , Olivia Burn1 , Bartholomeus van den Bogert2,3, Arjen 5 Nauta4 Kathryn Hart5, Paul Sowden1,6, Philip WJ Burnet7 ,Kathrin Cohen Kadosh1 6 1School of Psychology, Faculty of Health and Medical Sciences, University of Surrey, 7 Guildford, UK 8 2BaseClear, Leiden, The Netherlands 9 3MyMicroZoo, Leiden, The Netherlands 10 4FrieslandCampina, Amersfoort, The Netherlands 11 5Department of Nutritional Sciences, School of Biosciences and Medicine, Faculty of Health 12 and Medical Sciences, University of Surrey, Guildford, UK 13 6Department of Psychology, University of Winchester, Winchester, UK 14 7Department of Psychiatry, University of Oxford, Warneford Hospital, Oxford, UK 15 16 17 Corresponding authors 18 Phone: ++44(0) 1483 68 3968 19 Email: [email protected] 20 URL: kcohenkadosh.com 21 Email: [email protected] 22 23 Acknowledgements: 24 This research was supported by faculty research fund from the Faculty of Health and 25 Medical Sciences, University of Surrey, UK to KCK. FrieslandCampina provided the galacto- 26 oligosaccharides (GOS, prebiotics) used in this study. 27 Competing interests 28 AN is an employee of FrieslandCampina.
    [Show full text]
  • Variations in the Two Last Steps of the Purine Biosynthetic Pathway in Prokaryotes
    GBE Different Ways of Doing the Same: Variations in the Two Last Steps of the Purine Biosynthetic Pathway in Prokaryotes Dennifier Costa Brandao~ Cruz1, Lenon Lima Santana1, Alexandre Siqueira Guedes2, Jorge Teodoro de Souza3,*, and Phellippe Arthur Santos Marbach1,* 1CCAAB, Biological Sciences, Recoˆ ncavo da Bahia Federal University, Cruz das Almas, Bahia, Brazil 2Agronomy School, Federal University of Goias, Goiania,^ Goias, Brazil 3 Department of Phytopathology, Federal University of Lavras, Minas Gerais, Brazil Downloaded from https://academic.oup.com/gbe/article/11/4/1235/5345563 by guest on 27 September 2021 *Corresponding authors: E-mails: [email protected]fla.br; [email protected]. Accepted: February 16, 2019 Abstract The last two steps of the purine biosynthetic pathway may be catalyzed by different enzymes in prokaryotes. The genes that encode these enzymes include homologs of purH, purP, purO and those encoding the AICARFT and IMPCH domains of PurH, here named purV and purJ, respectively. In Bacteria, these reactions are mainly catalyzed by the domains AICARFT and IMPCH of PurH. In Archaea, these reactions may be carried out by PurH and also by PurP and PurO, both considered signatures of this domain and analogous to the AICARFT and IMPCH domains of PurH, respectively. These genes were searched for in 1,403 completely sequenced prokaryotic genomes publicly available. Our analyses revealed taxonomic patterns for the distribution of these genes and anticorrelations in their occurrence. The analyses of bacterial genomes revealed the existence of genes coding for PurV, PurJ, and PurO, which may no longer be considered signatures of the domain Archaea. Although highly divergent, the PurOs of Archaea and Bacteria show a high level of conservation in the amino acids of the active sites of the protein, allowing us to infer that these enzymes are analogs.
    [Show full text]
  • Gut Microbiota, Probiotic Interventions, and Cognitive Function in the Elderly: a Review of Current Knowledge
    nutrients Review Gut Microbiota, Probiotic Interventions, and Cognitive Function in the Elderly: A Review of Current Knowledge Agata Białecka-D˛ebek 1,* , Dominika Granda 1 , Maria Karolina Szmidt 1 and Dorota Zieli ´nska 2 1 Department of Human Nutrition, Institute of Human Nutrition Sciences, Warsaw University of Life Sciences (SGGW), Nowoursynowska 159c, 02-776 Warsaw, Poland; [email protected] (D.G.); [email protected] (M.K.S.) 2 Department of Food Gastronomy and Food Hygiene, Institute of Human Nutrition Sciences, Warsaw University of Life Sciences (SGGW), Nowoursynowska 159c, 02-776 Warsaw, Poland; [email protected] * Correspondence: [email protected] Abstract: Changes in the composition and proportions of the gut microbiota may be associated with numerous diseases, including cognitive impairment. Over the recent years, the growing interest in this relation is observed, but there are still many unknowns, especially in the elderly. To the best of our knowledge, this is the first work that synthesizes and critically evaluates existing evidence on the possible association between human gut microbiota and cognitive function in the elderly. For this purpose, comprehensive literature searches were conducted using the electronic databases PubMed, Google Scholar, and ScienceDirect. The gut microbiota of cognitively healthy and impaired elderly people may differ in the diversity and abundance of individual taxes, but specific taxes cannot be identified. However, some tendencies to changing the Firmicutes/Bacteroidetes ratio can be Citation: Białecka-D˛ebek,A.; identified. Currently, clinical trials involving probiotics, prebiotics, and synbiotics supplementation Granda, D.; Szmidt, M.K.; Zieli´nska, have shown that there are premises for the claim that these factors can improve cognitive functions, D.
    [Show full text]
  • Genomic Analysis of Uncultured Microbes in Marine Sediments
    University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Doctoral Dissertations Graduate School 12-2017 Singled Out: Genomic analysis of uncultured microbes in marine sediments Jordan Toby Bird University of Tennessee, [email protected] Follow this and additional works at: https://trace.tennessee.edu/utk_graddiss Recommended Citation Bird, Jordan Toby, "Singled Out: Genomic analysis of uncultured microbes in marine sediments. " PhD diss., University of Tennessee, 2017. https://trace.tennessee.edu/utk_graddiss/4829 This Dissertation is brought to you for free and open access by the Graduate School at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Doctoral Dissertations by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. To the Graduate Council: I am submitting herewith a dissertation written by Jordan Toby Bird entitled "Singled Out: Genomic analysis of uncultured microbes in marine sediments." I have examined the final electronic copy of this dissertation for form and content and recommend that it be accepted in partial fulfillment of the equirr ements for the degree of Doctor of Philosophy, with a major in Microbiology. Karen G. Lloyd, Major Professor We have read this dissertation and recommend its acceptance: Mircea Podar, Andrew D. Steen, Erik R. Zinser Accepted for the Council: Dixie L. Thompson Vice Provost and Dean of the Graduate School (Original signatures are on file with official studentecor r ds.) Singled Out: Genomic analysis of uncultured microbes in marine sediments A Dissertation Presented for the Doctor of Philosophy Degree The University of Tennessee, Knoxville Jordan Toby Bird December 2017 Copyright © 2017 by Jordan Bird All rights reserved.
    [Show full text]
  • Bacterial Involvements in Ulcerative Colitis: Molecular and Microbiological Studies
    BACTERIAL INVOLVEMENTS IN ULCERATIVE COLITIS: MOLECULAR AND MICROBIOLOGICAL STUDIES Samia Alkhalil A thesis submitted in partial fulfilment of the requirements for the award of the degree of Doctor of Philosophy of the University of Portsmouth Institute of Biomedical and biomolecular Sciences School of Pharmacy and Biomedical Sciences October 2017 AUTHORS’ DECLARATION I declare that whilst registered as a candidate for the degree of Doctor of Philosophy at University of Portsmouth, I have not been registered as a candidate for any other research award. The results and conclusions embodied in this thesis are the work of the named candidate and have not been submitted for any other academic award. Samia Alkhalil I ABSTRACT Inflammatory bowel disease (IBD) is a series of disorders characterised by chronic intestinal inflammation, with the principal examples being Crohn’s Disease (CD) and ulcerative colitis (UC). A paradigm of these disorders is that the composition of the colon microbiota changes, with increases in bacterial numbers and a reduction in diversity, particularly within the Firmicutes. Sulfate reducing bacteria (SRB) are believed to be involved in the etiology of these disorders, because they produce hydrogen sulfide which may be a causative agent of epithelial inflammation, although little supportive evidence exists for this possibility. The purpose of this study was (1) to detect and compare the relative levels of gut bacterial populations among patients suffering from ulcerative colitis and healthy individuals using PCR-DGGE, sequence analysis and biochip technology; (2) develop a rapid detection method for SRBs and (3) determine the susceptibility of Desulfovibrio indonesiensis in biofilms to Manuka honey with and without antibiotic treatment.
    [Show full text]
  • Product Sheet Info
    Product Information Sheet for HM-1099 Eggerthella sp., Strain MVA1 Tryptic soy agar with 5% defibrinated sheep blood or Modified Chopped Meat agar with 0.5% arginine or equivalent Incubation: Catalog No. HM-1099 Temperature: 37°C Atmosphere: Anaerobic For research use only. Not for human use. Propagation: 1. Keep vial frozen until ready for use, then thaw. Contributor: 2. Transfer the entire thawed aliquot into a single tube of broth. Maria V. Sizova, Department of Biology, Northeastern 3. Use several drops of the suspension to inoculate an agar University, Boston, Massachusetts, USA slant and/or plate. 4. Incubate the tube, slant and/or plate at 37°C for 2 to 4 days. Manufacturer: BEI Resources Citation: Acknowledgment for publications should read “The following Product Description: reagent was obtained through BEI Resources, NIAID, NIH as Bacteria Classification: Eggerthellaceae, Eggerthella part of the Human Microbiome Project: Eggerthella sp., Strain Species: Eggerthella sp. MVA1, HM-1099.” Strain: MVA1 Original Source: Eggerthella sp., strain MVA1 is a vaginal Biosafety Level: 2 isolate obtained in 2011 from a woman with bacterial Appropriate safety procedures should always be used with this vaginosis in Seattle, Washington, USA.1,2 material. Laboratory safety is discussed in the following Comments: Eggerthella sp., strain MVA1 (HMP ID 1636) is a publication: U.S. Department of Health and Human Services, reference genome for The Human Microbiome Project (HMP). Public Health Service, Centers for Disease Control and HMP is an initiative to identify and characterize human Prevention, and National Institutes of Health. Biosafety in microbial flora. The complete genome of Microbiological and Biomedical Laboratories.
    [Show full text]
  • Widespread Transfer of Mobile Antibiotic Resistance Genes Within Individual Gut Microbiomes Revealed Through Bacterial Hi-C ✉ Alyssa G
    ARTICLE https://doi.org/10.1038/s41467-020-18164-7 OPEN Widespread transfer of mobile antibiotic resistance genes within individual gut microbiomes revealed through bacterial Hi-C ✉ Alyssa G. Kent1,3, Albert C. Vill 1,3, Qiaojuan Shi1, Michael J. Satlin2 & Ilana Lauren Brito 1 The gut microbiome harbors a ‘silent reservoir’ of antibiotic resistance (AR) genes that is thought to contribute to the emergence of multidrug-resistant pathogens through horizontal 1234567890():,; gene transfer (HGT). To counteract the spread of AR, it is paramount to know which organisms harbor mobile AR genes and which organisms engage in HGT. Despite methods that characterize the overall abundance of AR genes in the gut, technological limitations of short-read sequencing have precluded linking bacterial taxa to specific mobile genetic ele- ments (MGEs) encoding AR genes. Here, we apply Hi-C, a high-throughput, culture- independent method, to surveil the bacterial carriage of MGEs. We compare two healthy individuals with seven neutropenic patients undergoing hematopoietic stem cell transplan- tation, who receive multiple courses of antibiotics, and are acutely vulnerable to the threat of multidrug-resistant infections. We find distinct networks of HGT across individuals, though AR and mobile genes are associated with more diverse taxa within the neutropenic patients than the healthy subjects. Our data further suggest that HGT occurs frequently over a several-week period in both cohorts. Whereas most efforts to understand the spread of AR genes have focused on pathogenic species, our findings shed light on the role of the human gut microbiome in this process. 1 Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY, USA.
    [Show full text]