DOCSLIB.ORG

Product Sheet Info

Total Page：16

File Type：pdf, Size：1020Kb

Download full-text PDF Read full-text
Product Sheet Info Product Information Sheet for HM-1099 Eggerthella sp., Strain MVA1 Tryptic soy agar with 5% defibrinated sheep blood or Modified Chopped Meat agar with 0.5% arginine or equivalent Incubation: Catalog No. HM-1099 Temperature: 37°C Atmosphere: Anaerobic For research use only. Not for human use. Propagation: 1. Keep vial frozen until ready for use, then thaw. Contributor: 2. Transfer the entire thawed aliquot into a single tube of broth. Maria V. Sizova, Department of Biology, Northeastern 3. Use several drops of the suspension to inoculate an agar University, Boston, Massachusetts, USA slant and/or plate. 4. Incubate the tube, slant and/or plate at 37°C for 2 to 4 days. Manufacturer: BEI Resources Citation: Acknowledgment for publications should read “The following Product Description: reagent was obtained through BEI Resources, NIAID, NIH as Bacteria Classification: Eggerthellaceae, Eggerthella part of the Human Microbiome Project: Eggerthella sp., Strain Species: Eggerthella sp. MVA1, HM-1099.” Strain: MVA1 Original Source: Eggerthella sp., strain MVA1 is a vaginal Biosafety Level: 2 isolate obtained in 2011 from a woman with bacterial Appropriate safety procedures should always be used with this vaginosis in Seattle, Washington, USA.1,2 material. Laboratory safety is discussed in the following Comments: Eggerthella sp., strain MVA1 (HMP ID 1636) is a publication: U.S. Department of Health and Human Services, reference genome for The Human Microbiome Project (HMP). Public Health Service, Centers for Disease Control and HMP is an initiative to identify and characterize human Prevention, and National Institutes of Health. Biosafety in microbial flora. The complete genome of Microbiological and Biomedical Laboratories. 5th ed. Eggerthella sp., strain MVA1 is being sequenced at the Washington, DC: U.S. Government Printing Office, 2009; see J. Craig Venter Institute. www.cdc.gov/biosafety/publications/bmbl5/index.htm. Note: HMP material is taxonomically classified by the depositor. Quality control of these materials is only performed to Disclaimers: demonstrate that the material distributed by BEI Resources is You are authorized to use this product for research use only. It identical to the deposited material. is not intended for human use. Eggerthella species are Gram-positive, obligately anaerobic, Use of this product is subject to the terms and conditions of the non-sporulating, non-motile rods found in the large intestine and BEI Resources Material Transfer Agreement (MTA). The MTA genitourinary tract.3 Eggerthella were reclassified from is available on our Web site at www.beiresources.org. Eubacteria in 1999, and the family Eggerthellaceae was reclassified from Coriobacteriaceae in 2013.3-5 Eggerthella While BEI Resources uses reasonable efforts to include species are phenotypically difficult to identify, and are emerging accurate and up-to-date information on this product sheet, as human pathogens.6,7 neither ATCC® nor the U.S. Government makes any warranties or representations as to its accuracy. Citations from scientific Material Provided: literature and patents are provided for informational purposes Each vial contains approximately 0.5 mL of bacterial culture in only. Neither ATCC® nor the U.S. Government warrants that Modified Chopped Meat medium with 0.5% arginine such information has been confirmed to be accurate. supplemented with 10% glycerol. This product is sent with the condition that you are responsible Note: If homogeneity is required for your intended use, please for its safe storage, handling, use and disposal. ATCC® and the purify prior to initiating work. U.S. Government are not liable for any damages or injuries arising from receipt and/or use of this product. While reasonable Packaging/Storage: effort is made to ensure authenticity and reliability of materials ® HM-1099 was packaged aseptically in cryovials. The product is on deposit, the U.S. Government, ATCC , their suppliers and provided frozen and should be stored at -60°C or colder contributors to BEI Resources are not liable for damages arising immediately upon arrival. For long-term storage, the vapor from the misidentification or misrepresentation of products. phase of a liquid nitrogen freezer is recommended. Freeze-thaw cycles should be avoided. Use Restrictions: This material is distributed for internal research, Growth Conditions: non-commercial purposes only. This material, its product or Media: its derivatives may not be distributed to third parties. Except as Modified Chopped Meat medium with 0.5% arginine or performed under a U.S. Government contract, individuals equivalent contemplating commercial use of the material, its products or its BEI Resources E-mail: [email protected] www.beiresources.org Tel: 800-359-7370 Fax: 703-365-2898 © 2018 American Type Culture Collection (ATCC). All rights reserved. HM-1099_26MAY2018 Page 1 of 2 Product Information Sheet for HM-1099 derivatives must contact the contributor to determine if a license is required. U.S. Government contractors may need a license before first commercial sale. References: 1. Sizova, M. V., Personal Communication. 2. HMP ID 1636 (Eggerthella sp., strain MVA1) 3. Moore, W. E. C., E. P. Cato and L. V. Holdeman. “Eubacterium lenturn (Eggerth) Prevot 1938: Emendation of Description and Designation of the Neotype Strain.” Int. J. Syst. Evol. Microbiol. 21 (1971): 299-303. 4. Gupta, R. S., et al. “Molecular Signatures for the Class Coriobacteriia and its Different Clades; Proposal for Division of the Class Coriobacteriia into the Emended Order Coriobacteriales, Containing the Emended Family Coriobacteriaceae and Atopobiaceae fam. nov., and Eggerthellales ord. nov., Containing the Family Eggerthellaceae fam. nov.” Int. J. Syst. Evol. Microbiol. 63 (2013): 3379-3397. PubMed: 23524353. 5. Kageyama, A., Y. Benno and T. Nakase. “Phylogenetic Evidence for the Transfer of Eubacterium lentum to the Genus Eggerthella as Eggerthella lenta gen. nov., comb. nov.” Int. J. Syst. Bacteriol. 49 (1999): 1725-1732. PubMed: 10555354. 6. Cho, G. S., et al. “Quantification of Slackia and Eggerthella spp. in Human Feces and Adhesion of Representatives Strains to Caco-2 Cells.” Front. Microbiol. 7 (2016): 658. PubMed: 27242689. 7. Ling, Z., et al. “Molecular Analysis of the Diversity of Vaginal Microbiota Associated with Bacterial Vaginosis.” BMC Genomics. 11 (2010): 488. PubMed: 20819230. ATCC® is a trademark of the American Type Culture Collection. BEI Resources E-mail: [email protected] www.beiresources.org Tel: 800-359-7370 Fax: 703-365-2898 © 2018 American Type Culture Collection (ATCC). All rights reserved. HM-1099_26MAY2018 Page 2 of 2 .
Load more

Recommended publications
  • Transcriptional Regulation of the Equol Biosynthesis Gene Cluster in Adlercreutzia Equolifaciens DSM19450T
    Article Transcriptional Regulation of the Equol Biosynthesis Gene Cluster in Adlercreutzia equolifaciens DSM19450T Ana Belén Flórez 1,*, Lucía Vázquez 1, Javier Rodríguez 1, Begoña Redruello 2 and Baltasar Mayo 1 1 Departamento de Microbiología y Bioquímica, Instituto de Productos Lácteos de Asturias (IPLA-CSIC), Paseo Río Linares s/n, Villaviciosa, 33300 Asturias, Spain; [email protected] (L.V.); [email protected] (J.R.); [email protected] (B.M.) 2 Servicios Científico-Técnicos, Instituto de Productos Lácteos de Asturias (IPLA-CSIC), Paseo Río Linares s/n, Villaviciosa, 33300 Asturias, Spain; [email protected] * Correspondence: [email protected]; Tel.: +34-985-89-21-31 Received: 25 February 2019; Accepted: 30 April 2019; Published: 30 April 2019 Abstract: Given the emerging evidence of equol’s benefit to human health, understanding its synthesis and regulation in equol-producing bacteria is of paramount importance. Adlercreutzia equolifaciens DSM19450T is a human intestinal bacterium —for which the whole genome sequence is publicly available— that produces equol from the daidzein isoflavone. In the present work, daidzein (between 50 to 200 μM) was completely metabolized by cultures of A. equolifaciens DSM19450T after 10 h of incubation. However, only about one third of the added isoflavone was transformed into dihydrodaidzein and then into equol. Transcriptional analysis of the ORFs and intergenic regions of the bacterium’s equol gene cluster was therefore undertaken using RT-PCR and RT-qPCR techniques with the aim of identifying the genetic elements of equol biosynthesis and its regulation mechanisms. Compared to controls cultured without daidzein, the expression of all 13 contiguous genes in the equol cluster was enhanced in the presence of the isoflavone.
    [Show full text]
  • Microbial Community Structure Dynamics in Ohio River Sediments During Reductive Dechlorination of Pcbs
    University of Kentucky UKnowledge University of Kentucky Doctoral Dissertations Graduate School 2008 MICROBIAL COMMUNITY STRUCTURE DYNAMICS IN OHIO RIVER SEDIMENTS DURING REDUCTIVE DECHLORINATION OF PCBS Andres Enrique Nunez University of Kentucky Right click to open a feedback form in a new tab to let us know how this document benefits ou.y Recommended Citation Nunez, Andres Enrique, "MICROBIAL COMMUNITY STRUCTURE DYNAMICS IN OHIO RIVER SEDIMENTS DURING REDUCTIVE DECHLORINATION OF PCBS" (2008). University of Kentucky Doctoral Dissertations. 679. https://uknowledge.uky.edu/gradschool_diss/679 This Dissertation is brought to you for free and open access by the Graduate School at UKnowledge. It has been accepted for inclusion in University of Kentucky Doctoral Dissertations by an authorized administrator of UKnowledge. For more information, please contact [email protected]. ABSTRACT OF DISSERTATION Andres Enrique Nunez The Graduate School University of Kentucky 2008 MICROBIAL COMMUNITY STRUCTURE DYNAMICS IN OHIO RIVER SEDIMENTS DURING REDUCTIVE DECHLORINATION OF PCBS ABSTRACT OF DISSERTATION A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the College of Agriculture at the University of Kentucky By Andres Enrique Nunez Director: Dr. Elisa M. D’Angelo Lexington, KY 2008 Copyright © Andres Enrique Nunez 2008 ABSTRACT OF DISSERTATION MICROBIAL COMMUNITY STRUCTURE DYNAMICS IN OHIO RIVER SEDIMENTS DURING REDUCTIVE DECHLORINATION OF PCBS The entire stretch of the Ohio River is under fish consumption advisories due to contamination with polychlorinated biphenyls (PCBs). In this study, natural attenuation and biostimulation of PCBs and microbial communities responsible for PCB transformations were investigated in Ohio River sediments. Natural attenuation of PCBs was negligible in sediments, which was likely attributed to low temperature conditions during most of the year, as well as low amounts of available nitrogen, phosphorus, and organic carbon.
    [Show full text]
  • Hawai'i's First Published Case of Eggerthella Lenta Sepsis
    Hawai‘i’s First Published Case of Eggerthella lenta Sepsis Taylor K. Peter-Bibb BA and Jinichi Tokeshi MD Abstract other medical issues include diverticulitis, diabetes mellitus type II, essential hypertension, stage 3 chronic kidney disease, Human bacteremia with Eggerthella lenta is rare. Upon review of the literature, hyperlipidemia, benign prostatic hyperplasia, chronic gout, the largest case series includes only about 100 cases, and optimal manage- and bilateral hearing loss. He was brought to his primary care ment of the condition is still unclear. This case report describes a patient physician (PCP) by his son and certified nurse assistant due diagnosed with E. lenta septicemia due to acute diverticulitis in 2019. This is the first published report of sepsis caused byE. lenta in the state of Hawai‘i. to rigors, cough productive of scant clear sputum, rhinorrhea, and 3 episodes of non-bilious, non-bloody emesis. In his PCP’s Abbreviations and Acronyms office, he had a temperature of 102˚F, heart rate of 103 beats per minute, respiratory rate of 22 breaths per minute, and right GI = gastrointestinal abdominal tenderness without rebound or guarding on exam. PCP = primary care physician His PCP recommended further workup in the emergency depart- MRSA = methicillin-resistant Staphylococcus aureus ment, which included a complete blood count significant for 14 500 white blood count cells/µL (normal range: 4000–11 000 Introduction cells/µL). Abdominal computed tomography without contrast revealed numerous colonic diverticula with pericecal inflam- Eggerthella lenta is a gram-positive, non-motile, non-spore- matory change. The patient was admitted for sepsis secondary forming, obligate anaerobic bacillus that was first isolated from to presumed acute diverticulitis.
    [Show full text]
  • Senegalemassilia Anaerobia Gen. Nov., Sp. Nov
    Standards in Genomic Sciences (2013) 7:343-356 DOI:10.4056/sigs.3246665 Non contiguous-finished genome sequence and description of Senegalemassilia anaerobia gen. nov., sp. nov. Jean-Christophe Lagier1, Khalid Elkarkouri1, Romain Rivet1, Carine Couderc1, Didier Raoult1 and Pierre-Edouard Fournier1* 1 Aix-Marseille Université, URMITE, Faculté de médecine, Marseille, France *Corresponding author: Pierre-Edouard Fournier ([email protected]) Keywords: Senegalemassilia anaerobia, genome Senegalemassilia anaerobia strain JC110T sp.nov. is the type strain of Senegalemassilia anaer- obia gen. nov., sp. nov., the type species of a new genus within the Coriobacteriaceae family, Senegalemassilia gen. nov. This strain, whose genome is described here, was isolated from the fecal flora of a healthy Senegalese patient. S. anaerobia is a Gram-positive anaerobic coccobacillus. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,383,131 bp long genome contains 1,932 protein- coding and 58 RNA genes. Introduction Classification and features Senegalemassilia anaerobia strain JC110T (= CSUR A stool sample was collected from a healthy 16- P147 = DSMZ 25959) is the type strain of S. anaer- year-old male Senegalese volunteer patient living obia gen. nov., sp. nov. This bacterium was isolat- in Dielmo (rural village in the Guinean-Sudanian ed from the feces of a healthy Senegalese patient. zone in Senegal), who was included in a research It is a Gram-positive, anaerobic, indole-negative protocol. Written assent was obtained from this coccobacillus. Classically, the polyphasic taxono- individual. No written consent was needed from his my is used to classify the prokaryotes by associat- guardians for this study because he was older than ing phenotypic and genotypic characteristics [1].
    [Show full text]
  • Daidzein Intake Is Associated with Equol Producing Status Through an Increase in the Intestinal Bacteria Responsible for Equol Production
    Article Daidzein Intake Is Associated with Equol Producing Status through an Increase in the Intestinal Bacteria Responsible for Equol Production Chikara Iino 1, Tadashi Shimoyama 2,*, Kaori Iino 3, Yoshihito Yokoyama 3, Daisuke Chinda 1, Hirotake Sakuraba 1, Shinsaku Fukuda 1 and Shigeyuki Nakaji 4 1 Department of Gastroenterology, Hirosaki University Graduate School of Medicine, Hirosaki 036-8562, Japan; [email protected] (C.I.); [email protected] (D.C.); [email protected] (H.S.); [email protected] (S.F.) 2 Aomori General Health Examination Center, Aomori 030-0962, Japan 3 Department of Obstetrics and Gynecology, Hirosaki University Graduate School of Medicine, Hirosaki 036-8562, Japan; [email protected] (K.I.); [email protected] (Y.Y.) 4 Department of Social Medicine, Hirosaki University Graduate School of Medicine, Hirosaki 036-8562, Japan; [email protected] * Correspondence: [email protected]; Tel.: +81-017-741-2336 Received: 9 January 2019; Accepted: 7 February 2019; Published: 19 February 2019 Abstracts: Equol is a metabolite of isoflavone daidzein and has an affinity to estrogen receptors. Although equol is produced by intestinal bacteria, the association between the status of equol production and the gut microbiota has not been fully investigated. The aim of this study was to compare the intestinal bacteria responsible for equol production in gut microbiota between equol producer and non-producer subjects regarding the intake of daidzein. A total of 1044 adult subjects who participated in a health survey in Hirosaki city were examined. The concentration of equol in urine was measured by high-performance liquid chromatography.
    [Show full text]
  • WO 2018/064165 A2 (.Pdf)
    (12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (10) International Publication Number (43) International Publication Date WO 2018/064165 A2 05 April 2018 (05.04.2018) W !P O PCT (51) International Patent Classification: Published: A61K 35/74 (20 15.0 1) C12N 1/21 (2006 .01) — without international search report and to be republished (21) International Application Number: upon receipt of that report (Rule 48.2(g)) PCT/US2017/053717 — with sequence listing part of description (Rule 5.2(a)) (22) International Filing Date: 27 September 2017 (27.09.2017) (25) Filing Language: English (26) Publication Langi English (30) Priority Data: 62/400,372 27 September 2016 (27.09.2016) US 62/508,885 19 May 2017 (19.05.2017) US 62/557,566 12 September 2017 (12.09.2017) US (71) Applicant: BOARD OF REGENTS, THE UNIVERSI¬ TY OF TEXAS SYSTEM [US/US]; 210 West 7th St., Austin, TX 78701 (US). (72) Inventors: WARGO, Jennifer; 1814 Bissonnet St., Hous ton, TX 77005 (US). GOPALAKRISHNAN, Vanch- eswaran; 7900 Cambridge, Apt. 10-lb, Houston, TX 77054 (US). (74) Agent: BYRD, Marshall, P.; Parker Highlander PLLC, 1120 S. Capital Of Texas Highway, Bldg. One, Suite 200, Austin, TX 78746 (US). (81) Designated States (unless otherwise indicated, for every kind of national protection available): AE, AG, AL, AM, AO, AT, AU, AZ, BA, BB, BG, BH, BN, BR, BW, BY, BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DJ, DK, DM, DO, DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, HN, HR, HU, ID, IL, IN, IR, IS, JO, JP, KE, KG, KH, KN, KP, KR, KW, KZ, LA, LC, LK, LR, LS, LU, LY, MA, MD, ME, MG, MK, MN, MW, MX, MY, MZ, NA, NG, NI, NO, NZ, OM, PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, RW, SA, SC, SD, SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW.
    [Show full text]
  • Table S4. Phylogenetic Distribution of Bacterial and Archaea Genomes in Groups A, B, C, D, and X
    Table S4. Phylogenetic distribution of bacterial and archaea genomes in groups A, B, C, D, and X. Group A a: Total number of genomes in the taxon b: Number of group A genomes in the taxon c: Percentage of group A genomes in the taxon a b c cellular organisms 5007 2974 59.4 |__ Bacteria 4769 2935 61.5 | |__ Proteobacteria 1854 1570 84.7 | | |__ Gammaproteobacteria 711 631 88.7 | | | |__ Enterobacterales 112 97 86.6 | | | | |__ Enterobacteriaceae 41 32 78.0 | | | | | |__ unclassified Enterobacteriaceae 13 7 53.8 | | | | |__ Erwiniaceae 30 28 93.3 | | | | | |__ Erwinia 10 10 100.0 | | | | | |__ Buchnera 8 8 100.0 | | | | | | |__ Buchnera aphidicola 8 8 100.0 | | | | | |__ Pantoea 8 8 100.0 | | | | |__ Yersiniaceae 14 14 100.0 | | | | | |__ Serratia 8 8 100.0 | | | | |__ Morganellaceae 13 10 76.9 | | | | |__ Pectobacteriaceae 8 8 100.0 | | | |__ Alteromonadales 94 94 100.0 | | | | |__ Alteromonadaceae 34 34 100.0 | | | | | |__ Marinobacter 12 12 100.0 | | | | |__ Shewanellaceae 17 17 100.0 | | | | | |__ Shewanella 17 17 100.0 | | | | |__ Pseudoalteromonadaceae 16 16 100.0 | | | | | |__ Pseudoalteromonas 15 15 100.0 | | | | |__ Idiomarinaceae 9 9 100.0 | | | | | |__ Idiomarina 9 9 100.0 | | | | |__ Colwelliaceae 6 6 100.0 | | | |__ Pseudomonadales 81 81 100.0 | | | | |__ Moraxellaceae 41 41 100.0 | | | | | |__ Acinetobacter 25 25 100.0 | | | | | |__ Psychrobacter 8 8 100.0 | | | | | |__ Moraxella 6 6 100.0 | | | | |__ Pseudomonadaceae 40 40 100.0 | | | | | |__ Pseudomonas 38 38 100.0 | | | |__ Oceanospirillales 73 72 98.6 | | | | |__ Oceanospirillaceae
    [Show full text]
  • Extensive Microbial Diversity Within the Chicken Gut Microbiome Revealed by Metagenomics and Culture
    Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture Rachel Gilroy1, Anuradha Ravi1, Maria Getino2, Isabella Pursley2, Daniel L. Horton2, Nabil-Fareed Alikhan1, Dave Baker1, Karim Gharbi3, Neil Hall3,4, Mick Watson5, Evelien M. Adriaenssens1, Ebenezer Foster-Nyarko1, Sheikh Jarju6, Arss Secka7, Martin Antonio6, Aharon Oren8, Roy R. Chaudhuri9, Roberto La Ragione2, Falk Hildebrand1,3 and Mark J. Pallen1,2,4 1 Quadram Institute Bioscience, Norwich, UK 2 School of Veterinary Medicine, University of Surrey, Guildford, UK 3 Earlham Institute, Norwich Research Park, Norwich, UK 4 University of East Anglia, Norwich, UK 5 Roslin Institute, University of Edinburgh, Edinburgh, UK 6 Medical Research Council Unit The Gambia at the London School of Hygiene and Tropical Medicine, Atlantic Boulevard, Banjul, The Gambia 7 West Africa Livestock Innovation Centre, Banjul, The Gambia 8 Department of Plant and Environmental Sciences, The Alexander Silberman Institute of Life Sciences, Edmond J. Safra Campus, Hebrew University of Jerusalem, Jerusalem, Israel 9 Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, UK ABSTRACT Background: The chicken is the most abundant food animal in the world. However, despite its importance, the chicken gut microbiome remains largely undefined. Here, we exploit culture-independent and culture-dependent approaches to reveal extensive taxonomic diversity within this complex microbial community. Results: We performed metagenomic sequencing of fifty chicken faecal samples from Submitted 4 December 2020 two breeds and analysed these, alongside all (n = 582) relevant publicly available Accepted 22 January 2021 chicken metagenomes, to cluster over 20 million non-redundant genes and to Published 6 April 2021 construct over 5,500 metagenome-assembled bacterial genomes.
    [Show full text]
  • Table S5. the Information of the Bacteria Annotated in the Soil Community at Species Level
    Table S5. The information of the bacteria annotated in the soil community at species level No. Phylum Class Order Family Genus Species The number of contigs Abundance(%) 1 Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus 1749 5.145782459 2 Bacteroidetes Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter sedentarius 1538 4.52499338 3 Gemmatimonadetes Gemmatimonadetes Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonesis 1020 3.000970902 4 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas indica 797 2.344876284 5 Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus piscium 542 1.594633558 6 Actinobacteria Thermoleophilia Solirubrobacterales Conexibacteraceae Conexibacter Conexibacter woesei 471 1.385742446 7 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas taxi 430 1.265115184 8 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas wittichii 388 1.141545794 9 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. FARSPH 298 0.876754244 10 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sorangium cellulosum 260 0.764953367 11 Proteobacteria Deltaproteobacteria Myxococcales Polyangiaceae Sorangium Sphingomonas sp. Cra20 260 0.764953367 12 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas panacis 252 0.741416341
    [Show full text]
  • Role of Actinobacteria and Coriobacteriia in the Antidepressant Effects of Ketamine in an Inflammation Model of Depression
    Pharmacology, Biochemistry and Behavior 176 (2019) 93–100 Contents lists available at ScienceDirect Pharmacology, Biochemistry and Behavior journal homepage: www.elsevier.com/locate/pharmbiochembeh Role of Actinobacteria and Coriobacteriia in the antidepressant effects of ketamine in an inflammation model of depression T Niannian Huanga,1, Dongyu Huaa,1, Gaofeng Zhana, Shan Lia, Bin Zhub, Riyue Jiangb, Ling Yangb, ⁎ ⁎ Jiangjiang Bia, Hui Xua, Kenji Hashimotoc, Ailin Luoa, , Chun Yanga, a Department of Anesthesiology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, China b Department of Internal Medicine, The Third Affiliated Hospital of Soochow University, Changzhou 213003, China c Division of Clinical Neuroscience, Chiba University Center for Forensic Mental Health, Chiba 260-8670, Japan ARTICLE INFO ABSTRACT Keywords: Ketamine, an N-methyl-D-aspartic acid receptor (NMDAR) antagonist, elicits rapid-acting and sustained anti- Ketamine depressant effects in treatment-resistant depressed patients. Accumulating evidence suggests that gut microbiota Depression via the gut-brain axis play a role in the pathogenesis of depression, thereby contributing to the antidepressant Lipopolysaccharide actions of certain compounds. Here we investigated the role of gut microbiota in the antidepressant effects of Gut microbiota ketamine in lipopolysaccharide (LPS)-induced inflammation model of depression. Ketamine (10 mg/kg) sig- nificantly attenuated the increased immobility time in forced swimming test (FST), which was associated with the improvements in α-diversity, consisting of Shannon, Simpson and Chao 1 indices. In addition to α-diversity, β-diversity, such as principal coordinates analysis (PCoA), and linear discriminant analysis (LDA) coupled with effect size measurements (LEfSe), showed a differential profile after ketamine treatment.
    [Show full text]
  • Eggerthella Lenta Type Strain IPP VPI 0255 Chemotaxonomy MMK-6 (36.3%) [8,29,31]
    Standards in Genomic Sciences (2009) 1: 174-182 DOI:10.4056/sigs.33592 Complete genome sequence of Eggerthella lenta type strain (VPI 0255T) Elizabeth Saunders1, Rüdiger Pukall2, Birte Abt2, Alla Lapidus1, Tijana Glavina Del Rio1, Alex Copeland1, Hope Tice1, Jan-Fang Cheng1, Susan Lucas1, Feng Chen1, Matt Nolan1, David Bruce1,3, Lynne Goodwin1,3, Sam Pitluck1, Natalia Ivanova1, Konstantinos Mavromatis1, Ga- lina Ovchinnikova1, Amrita Pati1, Amy Chen4, Krishna Palaniappan4, Miriam Land1,5, Loren Hauser1,5, Yun-Juan Chang1,5, Cynthia D. Jeffries1,5, Patrick Chain1,6, Linda Meincke1,3, David Sims1,3, Thomas Brettin1,3, John C. Detter1,3, Markus Göker2, Jim Bristow1, Jonathan A. Ei- sen1,7, Victor Markowitz4, Philip Hugenholtz1, Nikos C. Kyrpides1, Hans-Peter Klenk2, and Cliff Han1,3* 1 DOE Joint Genome Institute, Walnut Creek, California, USA 2 DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany 3 Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA 4 Biological Data Management and Technology Center, Lawrence Berkeley National Labora- tory, Berkeley, California, USA 5 Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA 6 Lawrence Livermore National Laboratory, Livermore, California, USA 7 University of California Davis Genome Center, Davis, California, USA *Corresponding author: Cliff Han Keywords: mesophile, anaerobic, human intestinal microflora, pathogenic, bacteremia, Gram-positive, Coriobacteriaceae Eggerthella lenta (Eggerth 1935) Wade et al. 1999, emended Würdemann et al. 2009 is the type species of the genus Eggerthella, which belongs to the actinobacterial family Coriobacte- riaceae. E. lenta is a Gram-positive, non-motile, non-sporulating pathogenic bacterium that can cause severe bacteremia. The strain described in this study has been isolated from a rec- tal tumor in 1935.
    [Show full text]
  • Supplementary Data TMAO Microbiome R1
    BMJ Publishing Group Limited (BMJ) disclaims all liability and responsibility arising from any reliance Supplemental material placed on this supplemental material which has been supplied by the author(s) Gut Content for Supplementary Data Tables Tables Page Annotation guide for taxonomic features. 1 Supplementary Data 1a. Microbial associations with TMAO, and intakes 7 of choline and red meat. Supplementary Data 1b. Microbial associations with TMAO in 8 15 sensitivity analysis models. Supplementary Data 2a. Associations of intakes of choline and red meat, 21 or other TMAO precursors with TMAO levels, stratified by TMAO- associated abundant species, in full models and additionally adjusted for other TMAO precursors or TMAO predicting species. Supplementary Data 2b. Associations of intakes of choline and red meat, 34 or other TMAO precursors with TMAO levels, stratified by TMAO- producer status, additionally adjusted for other TMAO precursors. Supplementary Data 2c. Associations of intakes of choline and red meat, 37 or other TMAO precursors with TMAO levels, stratified by TMAO- producer status, in 6 different sensitivity analysis models. Supplementary Data 2d. Associations of intakes of red meat with HDLC 39 and HBA1c levels, stratified by TMAO-producer status or TMAO- associated abundant species. Supplementary Data 3a. Association of DNA gene clusters within 40 TMAO-associated species with plasma TMAO levels, and intakes of choline and red meat. Supplementary Data 3b. Association of transcriptions of gene clusters 46 (RNA/DNA ratio) within TMAO-associated species with plasma TMAO levels, and intakes of choline and red meat. Supplementary Data 4a. Association of DNA enzyme within TMAO- 62 associated species with plasma TMAO levels, and intakes of choline and red meat.
    [Show full text]