(12) Patent Application Publication (10) Pub. No.: US 2013/0184456A1 ZAWOROTKO Et Al

Total Page:16

File Type:pdf, Size:1020Kb

(12) Patent Application Publication (10) Pub. No.: US 2013/0184456A1 ZAWOROTKO Et Al US 2013 O184456A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2013/0184456A1 ZAWOROTKO et al. (43) Pub. Date: Jul.18, 2013 (54) HETEROCYCLIC MACROCYCLE C07F 13/00 (2006.01) TEMPLATED METAL-ORGANIC C07F 15/04 (2006.01) MATERLALS C07F 3/08 (2006.01) (75) Inventors: Michael John ZAWOROTKO, Tampa, C07F 15/02 (2006.01) FL (US); Zhenjie Zhang, Tampa, FL (52) U.S. Cl. (US); Randy W. Larsen, Tampa, FL CPC ................. C07F 15/065 (2013.01); C07F 3/08 (US); Mohamed Eddaoudi, Tampa, FL (2013.01); C07F 3/06 (2013.01); C07F 15/025 (US); Linping Zhang, Tampa, FL (US); (2013.01); C07F 13/005 (2013.01); C07F Lukasz Wojtas, Tampa, FL (US) 15/045 (2013.01); C07F 3/02 (2013.01) (73) Assignee: UNIVERSITY OF SOUTH USPC .......................................................... 540/145 FLORIDA, Tampa, FL (US) (21) Appl. No.: 13/528,136 (57) ABSTRACT (22) Filed: Jun. 20, 2012 Related U.S. Application Data A process for the preparation of a heterocyclic macrocycle (60) Provisional application No. 61/499,140, filed on Jun templated Supramolecular metal organic material, the process 20, 2011 pp s u. I ws comprising preparing a reaction mixture containing a metal, a s heterocyclic macrocycle, and organic ligands and forming, in Publication Classification the reaction mixture, a heterocyclic macrocycle-templated metal organic material comprising the metal, the heterocyclic (51) Int. Cl. macrocycle and the ligands by template-directed synthesis C07F 15/06 (2006.01) with the heterocyclic macrocycle serving as the template and C7F 3/06 (2006.01) being encapsulated within a cage of the template metal C07F 3/02 (2006.01) organic material. Patent Application Publication Jul.18, 2013 Sheet 1 of 19 US 2013/O18445.6 A1 MBB it of hits Number of structures for specific metals Square paddlewheel 2075 Cu(1027), Rh(414), Ru(212), Mo(125), (M(COO)4 Zn(68), Fe(52), Cr(48), Co(26), Ni(25), W(21), Mn(10), Re(10), Ca(7), W(6), Bi(6), Tc(6), Os(5), Ti(4), Pt(3), Hg(2), n(1), x: Mg(1), Al(1), Sc(1) Octahedral 5813 Ru(1375), Co(768), Ni(754), Fe(674), M(py)4(nM)2 Cu(589), Mn(490), Zn(398), Cod(254), nM. non-metaic Os(91), ir(77), Cr(71), Rh(56), V(47), elements Re(28), Pb(24), Hg (22), Ga(18), Mo(17), Tc(17), Yb(8), Ti(7), A1(7), Na(6), Ag(5), Mg(4), W(4), Nb(3), Pt(3), Eu(2), in (2), Pa(1), Sn(1), T(1), Ca(1), K(1), Zr(1), Sm(1) Trigonal prism 497 Fe(170), Cr(80), Mn(47), Ru(41), Mo(22), M3O(COO)s. W(23), W(17), ir(4), Nb(4), Co(3), Rh(3), . Be(3), Ni(2), n(2), A(2), Sc(1), Zn(1) Octahedron 50 Zn(42), Co(3), Be (3), Cu(2) (M.O(COO)) FIG. Patent Application Publication Jul.18, 2013 Sheet 2 of 19 US 2013/O18445.6 A1 d 2SS13S ( s' s N g s R. SS SS A. aS a s & O EYQ,QN S.As -- s a- NNS 2SSe SN at t y g? VVSA S1) SS YS FIG. 2 Patent Application Publication Jul.18, 2013 Sheet 3 of 19 US 2013/O18445.6 A1 FIG. 3 Patent Application Publication Jul.18, 2013 Sheet 4 of 19 US 2013/O18445.6 A1 FIG. 4 Patent Application Publication Jul.18, 2013 Sheet 5 of 19 US 2013/O18445.6 A1 s E.S S(NA^ FIG. 5 Patent Application Publication Jul.18, 2013 Sheet 6 of 19 US 2013/O18445.6 A1 FIG. 6 Patent Application Publication Jul.18, 2013 Sheet 7 of 19 US 2013/O18445.6 A1 FIG. 7 Patent Application Publication Jul.18, 2013 Sheet 8 of 19 US 2013/O18445.6 A1 FIG. 8 Patent Application Publication Jul.18, 2013 Sheet 9 of 19 US 2013/O18445.6 A1 FIG. 9 Patent Application Publication Jul.18, 2013 Sheet 10 of 19 US 2013/O18445.6 A1 FIG. 10 Patent Application Publication Jul.18, 2013 Sheet 11 of 19 US 2013/O18445.6 A1 FIG 11 Patent Application Publication Jul.18, 2013 Sheet 12 of 19 US 2013/O18445.6 A1 FIG. 12 Patent Application Publication Jul.18, 2013 Sheet 13 of 19 US 2013/O18445.6 A1 Patent Application Publication Jul.18, 2013 Sheet 14 of 19 US 2013/O18445.6 A1 FIG. 14 Patent Application Publication Jul.18, 2013 Sheet 15 of 19 US 2013/O18445.6 A1 FIG. 15 Patent Application Publication Jul.18, 2013 Sheet 16 of 19 US 2013/O18445.6 A1 FIG 16 Patent Application Publication Jul.18, 2013 Sheet 17 of 19 US 2013/O18445.6 A1 FIG. 17 Patent Application Publication Jul.18, 2013 Sheet 18 of 19 US 2013/O18445.6 A1 Patent Application Publication Jul.18, 2013 Sheet 19 of 19 US 2013/O18445.6 A1 FIG. 19 US 2013/018445.6 A1 Jul. 18, 2013 HETEROCYCLIC MACROCYCLE reactions occur only at their surfaces; porph(a)MOMs were TEMPLATED METAL-ORGANIC previously limited to a small set of existing MOMs that have MATERALS the right type of cavity to selectively encapsulate a porphyrin molecule. CROSS REFERENCE TO RELATED 0007. Design principles that are based upon the concepts APPLICATIONS of crystal engineering and self-assembly have recently 0001. This application claims priority to U.S. Provisional afforded new classes of crystalline Solids that possess impor Application Ser. No. 61/499,140, filed Jun. 20, 2011 and tant physical properties such as bulk magnetism or porosity. additionally claims priority to U.S. application Ser. No. Large-scale molecular networks have been developed to 13/412,308, filed Mar. 5, 2012, which claims priority to U.S. encapsulate other materials and these are playing an ever Provisional Application No. 61/448,974, filed Mar. 3, 2011, increasing role in the pharmaceutical industry and as materi each of which is incorporated herein by reference in its als for sensors, and liquid crystals. In addition, with the inclu entirety. sion of metals within the structures, the large polymers formed by these crystals can possess, among other properties, FIELD OF THE INVENTION catalytic, fluorescent, and magnetic attributes. 0002 The present invention generally relates to supramo SUMMARY OF THE INVENTION lecular assemblies, and their modes of synthesis. 0008 Among the various aspects of the present invention BACKGROUND OF THE INVENTION is the provision of a template-directed synthetic process for the preparation of metal organic materials; the provision of 0003 Porphyrins are remarkable and versatile ligands for Such a process for the formation of a product in which any of transition metals and metalloporphyrins have found a wide a class of heterocyclic macrocycles is encapsulated because range of applications in enzymatic reactions and biomimetic/ of shape and/or noncovalent bonds between the heterocyclic industrial chemistry." Metal-Organic Materials (MOMs) are macrocycle and the framework of the metal-organic material. comprised of metals or metal clusters (“nodes') coordinated 0009 Briefly, therefore, the present invention is directed to multi-functional organic ligands (“linkers”); and they to a process for the preparation of a heterocyclic macrocycle offer unparalleled levels of permanent porosity (there are templated Supramolecular metal organic material. The pro numerous MOMs with BET Surface areas in the 3000-6000 cess comprises preparing a reaction mixture containing a migrange). Furthermore, the modular nature of MOMs and metal, a heterocyclic macrocycle, and organic ligands and their use of known coordination chemistry offer enormous forming, in the reaction mixture, a heterocyclic macrocycle diversity of structures and properties." templated metal organic material comprising the metal, the 0004. In principle, metal-organic materials (MOMs) that heterocyclic macrocycle and the ligands by template-directed are based upon polyhedral cages' offerexcellent platforms synthesis with the heterocyclic macrocycle serving as the for the development of porph?a MOM heterogeneous cata template. lytic systems since certain polyhedral MOMs contain cages 0010. Another aspect of the present invention is a process with the requisite symmetry and size to accommodate a cata for the preparation of a heterocyclic macrocycle-templated lytic metalloporphyrin in a “ship-in-a-bottle' fashion and Supramolecular metal organic material. The process com pores that facilitate ingress of Substrate and egress of product. prises (i) preparing a reaction mixture containing a metalated 0005 Porphyrin encapsulation (as opposed to porphyrin heterocyclic macrocycle, organic ligands and a metal, the walled MOMs prepared from custom-designed porphyrins') metalated heterocyclic macrocycle coordinating a first metal, and catalytic activity has thus far been demonstrated in only (ii) forming a metalated heterocyclic macrocycle-templated three MOMs: a discrete pillared coordination box, the pro Supramolecular metal organic material comprising the metal, totypal' polyhedral MOMHKUST-1" and a zeolitic metal the metalated heterocyclic macrocycle and the ligands in the organic framework that exhibits rho-Zeolite topology.'" reaction mixture by template-directed synthesis with the HKUST-1 is formed via assembly of benzene-1,3,5-tricar metalated heterocyclic macrocycle serving as the template, boxylate (BTC) anions and Cu" (HKUST-1-Cu)'', Zn and (iii) exchanging the first metal coordinated by the meta (HKUST-1-Zn)', Fe?"/Fe (HKUST-1-Fe)' or Nit lated heterocyclic macrocycle of the metalated heterocyclic (HKUST-1-Ni)7 cations, and is well-suited to serve as a macrocycle-templated Supramolecular metal organic mate platform for catalysis since its topology affords three distinct rial with a second metal, the first and second metals being polyhedral cages capable of entrapping guest molecules. different. Indeed, HKUST-1-Cu selectively encapsulates polyoxomet 0011. Another aspect of the invention is the preparation of allate anions and exhibits size selective catalysis of ester metal-organic materials in which a heterocyclic macrocycle hydrolysis." However, the number of metals that can form is encapsulated rather than part of the metal-organic material.
Recommended publications
  • 1.1-Billion-Year-Old Porphyrins Establish a Marine Ecosystem Dominated by Bacterial Primary Producers
    1.1-billion-year-old porphyrins establish a marine ecosystem dominated by bacterial primary producers N. Guenelia,1, A. M. McKennab, N. Ohkouchic, C. J. Borehamd, J. Beghine, E. J. Javauxe, and J. J. Brocksa,1 aResearch School of Earth Sciences, Australian National University, Canberra, ACT 2601, Australia; bNational High Magnetic Field Laboratory, Florida State University, Tallahassee, FL 32310-4005; cDepartment of Biogeochemistry, Japan Agency for Marine–Earth Science and Technology, 237-0061 Kanagawa Prefecture, Yokosuka, Natsushimacho, Japan; dGeoscience Australia, Symonston, ACT 2609, Australia; and eDepartment of Geology, Unité de Recherche Geology, University of Liège, 4000 Liege, Belgium Edited by Andrew H. Knoll, Harvard University, Cambridge, MA, and approved June 8, 2018 (received for review March 6, 2018) The average cell size of marine phytoplankton is critical for the the molecular fossils of biological lipids, can provide comple- flow of energy and nutrients from the base of the food web to mentary information about primary producers. For example, higher trophic levels. Thus, the evolutionary succession of primary hydrocarbon fossils of carotenoid pigments extracted from sed- producers through Earth’s history is important for our understand- imentary rocks have been used to detect phototrophic green ing of the radiation of modern protists ∼800 million years ago and (Chlorobiaceae) and purple sulfur bacteria (PSB) (Chromatia- ∼ the emergence of eumetazoan animals 200 million years later. ceae) in 1,640-My-old marine ecosystems (4, 5), while the con- Currently, it is difficult to establish connections between primary centration of eukaryotic steranes, relative to bacterial hopanes, production and the proliferation of large and complex organisms may provide basic information about the ecological relevance of because the mid-Proterozoic (∼1,800–800 million years ago) rock Precambrian algae (6).
    [Show full text]
  • Phototrophic Pigment Production with Microalgae
    Phototrophic pigment production with microalgae Kim J. M. Mulders Thesis committee Promotor Prof. Dr R.H. Wijffels Professor of Bioprocess Engineering Wageningen University Co-promotors Dr D.E. Martens Assistant professor, Bioprocess Engineering Group Wageningen University Dr P.P. Lamers Assistant professor, Bioprocess Engineering Group Wageningen University Other members Prof. Dr H. van Amerongen, Wageningen University Prof. Dr M.J.E.C. van der Maarel, University of Groningen Prof. Dr C. Vilchez Lobato, University of Huelva, Spain Dr S. Verseck, BASF Personal Care and Nutrition GmbH, Düsseldorf, Germany This research was conducted under the auspices of the Graduate School VLAG (Advanced studies in Food Technology, Agrobiotechnology, Nutrition and Health Sciences). Phototrophic pigment production with microalgae Kim J. M. Mulders Thesis submitted in fulfilment of the requirement for the degree of doctor at Wageningen University by the authority of the Rector Magnificus Prof. Dr M.J. Kropff, in the presence of the Thesis Committee appointed by the Academic Board to be defended in public on Friday 5 December 2014 at 11 p.m. in the Aula. K. J. M. Mulders Phototrophic pigment production with microalgae, 192 pages. PhD thesis, Wageningen University, Wageningen, NL (2014) With propositions, references and summaries in Dutch and English ISBN 978-94-6257-145-7 Abstract Microalgal pigments are regarded as natural alternatives for food colourants. To facilitate optimization of microalgae-based pigment production, this thesis aimed to obtain key insights in the pigment metabolism of phototrophic microalgae, with the main focus on secondary carotenoids. Different microalgal groups each possess their own set of primary pigments. Besides, a selected group of green algae (Chlorophytes) accumulate secondary pigments (secondary carotenoids) when exposed to oversaturating light conditions.
    [Show full text]
  • Modifications of Protoporphyrin IX Fluorescence During ALA-Based
    ARTICLE IN PRESS Medical Laser Application 21 (2006) 291–297 www.elsevier.de/mla Modifications of protoporphyrin IX fluorescence during ALA-based photodynamic therapy of endometriosis Karsten Ko¨niga,Ã, Marie-Therese Wyss-Desserichb, Yona Tadirc, Urs Hallerb, Bruce Trombergc, Michael W. Bernsc, P. Wyssb aFraunhofer Institute of Biomedical Technology (IBMT), Ensheimer Straße 48, 66386 St. Ingbert, Germany bDepartment of Obstetrics and Gynecology, Clinic of Gynecology, Frauenklinikstr. 10, University Hospital Zu¨rich, 8091 Zu¨rich, Switzerland cBeckman Laser Institute and Medical Clinic, University of California, 1002 Health Sciences Road Irvine, Irvine, CA 92612, USA Received 20 June 2006; accepted 31 July 2006 Abstract Modifications of the porphyrin fluorescence during photodynamic treatment of ovarian cells, endometrial adenocarcinoma cells and rat uterus after administration of the porphyrin precursor d-aminolevulinic acid and exposure with 630 nm laser radiation have been studied. The intracellular and intratissue fluorescence was excited with 407 nm radiation of a krypton ion laser and detected by spectral microscopic imaging using a modified microscope equipped with a slow-scan cooled camera and a liquid crystal filter. In particular, singlet oxygen induced effects due to photobleaching as well as formation of chlorin-type fluorescent photoproducts were detected at around 500, 630 and 670 nm. The photodynamically induced fluorescence modifications were found to vary between cell types. The major fluorescence peak of PP IX was photobleached 63% by a phototoxic fluence of about 20–40 J/cm2 in cells and within rat endometrium. Higher fluences were required to bleach the fluorescence at around 670 nm due to the formation of fluorescent photoproducts.
    [Show full text]
  • I Topic - Algal Pigments and Algal Classification(ALGAE) Prepared by –Prof.(Dr.)Jainendra Kumar Coordinated By: Prof.(Dr) Shyam Nandan Prasad
    Course- M.Sc. Botany Part -I Paper -I Topic - Algal Pigments and algal Classification(ALGAE) Prepared by –Prof.(Dr.)Jainendra Kumar Coordinated by: Prof.(Dr) Shyam Nandan Prasad The algae were broadly divided by F.F.Fritsch (1935) into eleven classes according to their colour - 1. Chlorophyceae or green algae 2. Xanthophyceae or yellow-green algae 3. Chrysophyceae 4. Bacillariophyceae or golden-brown algae 5. Cryptophyceae 6. Dinophyceae 7. Chloromonadineae 8. Eugleninae 9. Phaeophyceae or brown algae 10. Rhodophyceae or red algae, and 11. Myxophyceae or blue-green algae Normally, classification of algae is based on - 1. Nuclear Organization 2. Nature of Cell Wall Components 3. Pigmentation and Photosynthetic Apparatus The pigment is one of the most important criteria used in differentiation of classes in algae. The pigments in algae can be chlorophylls, carotenoids and biloproteins. These pigments are present in sac like structures called thylakoids. The thylakoids are arranged in stacks in the granum of the chloroplasts. Different groups of algae have different types of pigments and organization of thylakoids in chloroplast. The chlorophylls in algae are chlorophyll a, b, c, d and e types. Chlorophyll a is present in all classes of algae. Chlorophyll b is primary pigment of Chlorophyceae and Euglenineae. Chlorophyll c is found in Phaeophyceae and Cryptophyceae. Chlorophyll d is found in Rhodophyceae. Chlorophyll e is confined to Tribonema of Xanthophyceae. Pigments are chemical compounds which reflect only certain wavelengths of visible light. This makes them appear colourful. More important than their reflection of light is the ability of pigments to absorb certain wavelengths. Since each pigment reacts with only a narrow range of the spectrum, it is important for algae to produce pigments of different colours to capture more of the sun's energy.
    [Show full text]
  • ABSTRACT ZHANG, SHAOFEI. Synthesis Of
    ABSTRACT ZHANG, SHAOFEI. Synthesis of Bacteriochlorins and the Full Skeleton of Bacteriochlorophylls. (Under the direction of Professor Jonathan S. Lindsey.) Bacteriochlorins, the core macrocycle ring of natural bacteriochlorophylls, are characterized by their ability to absorb near infrared light (700 – 900 nm), which makes them attractive candidates in variety of photophysical studies and applications. The previously established de novo synthesis, which relies on the acid-catalyzed self-condensation of dihydrodipyrrin–acetal, provides access towards diverse bacteriochlorins, but has its limitations. This dissertation describes the development of new strategies for bacteriochlorin synthesis. Firstly, a route towards previously unknown tetra-alkyl bacteriochlorins (e.g., alkyl = Me, or –CH2CO2Me) is established (Ch. 2). Secondly, explorations of synthetic approaches to unsymmetrically substituted bacteriochlorins through electrocyclic reactions of linear tetrapyrrole intermediates are described. Four new unsymmetrically substituted bacteriochlorins and one new tetradehydrocorrin were produced, albeit in low yields (Ch. 3). Thirdly, a new method to construct bacteriochlorin macrocycle with concomitant Nazarov cyclization to form the annulated isocyclic ring, is established. Five new bacteriochlorins, which are closely anlogues of bacteriochlorophyll a, bearing various substituents (alkyl/alkyl, aryl, and alkyl/ester) at positions 2 and 3 and 132 carboalkoxy groups (R = Me or Et) were constructed in 37−61% yield from the bilin analogues
    [Show full text]
  • A Primitive Pathway of Porphyrin Biosynthesis and Enzymology in Desulfovibrio Vulgaris
    Proc. Natl. Acad. Sci. USA Vol. 95, pp. 4853–4858, April 1998 Biochemistry A primitive pathway of porphyrin biosynthesis and enzymology in Desulfovibrio vulgaris TETSUO ISHIDA*, LING YU*, HIDEO AKUTSU†,KIYOSHI OZAWA†,SHOSUKE KAWANISHI‡,AKIRA SETO§, i TOSHIRO INUBUSHI¶, AND SEIYO SANO* Departments of *Biochemistry and §Microbiology and ¶Division of Biophysics, Molecular Neurobiology Research Center, Shiga University of Medical Science, Seta, Ohtsu, Shiga 520-21, Japan; †Department of Bioengineering, Faculty of Engineering, Yokohama National University, 156 Tokiwadai, Hodogaya-ku, Yokohama 240, Japan; and ‡Department of Public Health, Graduate School of Medicine, Kyoto University, Sakyou-ku, Kyoto 606, Japan Communicated by Rudi Schmid, University of California, San Francisco, CA, February 23, 1998 (received for review March 15, 1998) ABSTRACT Culture of Desulfovibrio vulgaris in a medium billion years ago (3). Therefore, it is important to establish the supplemented with 5-aminolevulinic acid and L-methionine- biosynthetic pathway of porphyrins in D. vulgaris, not only methyl-d3 resulted in the formation of porphyrins (sirohydro- from the biochemical point of view, but also from the view- chlorin, coproporphyrin III, and protoporphyrin IX) in which point of molecular evolution. In this paper, we describe a the methyl groups at the C-2 and C-7 positions were deuter- sequence of intermediates in the conversion of uroporphy- ated. A previously unknown hexacarboxylic acid was also rinogen III to coproporphyrinogen III and their stepwise isolated, and its structure was determined to be 12,18- enzymic conversion. didecarboxysirohydrochlorin by mass spectrometry and 1H NMR. These results indicate a primitive pathway of heme biosynthesis in D. vulgaris consisting of the following enzy- MATERIALS AND METHODS matic steps: (i) methylation of the C-2 and C-7 positions of Materials.
    [Show full text]
  • Design, Synthesis, and Biological Evaluation of Folate Targeted Photosensitizers for Photodynamic Therapy
    Loyola University Chicago Loyola eCommons Dissertations Theses and Dissertations 2015 Design, Synthesis, and Biological Evaluation of Folate Targeted Photosensitizers for Photodynamic Therapy Laura Jean Donahue Loyola University Chicago Follow this and additional works at: https://ecommons.luc.edu/luc_diss Part of the Chemistry Commons Recommended Citation Donahue, Laura Jean, "Design, Synthesis, and Biological Evaluation of Folate Targeted Photosensitizers for Photodynamic Therapy" (2015). Dissertations. 1940. https://ecommons.luc.edu/luc_diss/1940 This Dissertation is brought to you for free and open access by the Theses and Dissertations at Loyola eCommons. It has been accepted for inclusion in Dissertations by an authorized administrator of Loyola eCommons. For more information, please contact [email protected]. This work is licensed under a Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 License. Copyright © 2015 Laura Jean Donahue LOYOLA UNIVERSITY CHICAGO DESIGN, SYNTHESIS, AND BIOLOGICAL EVALUATION OF FOLATE TARGETED PHOTOSENSITIZERS FOR PHOTODYNAMIC THERAPY A DISSERTATION SUBMITTED TO THE FACULTY OF THE GRADUATE SCHOOL IN CANDIDACY FOR THE DEGREE OF DOCTOR OF PHILOSOPHY PROGRAM IN CHEMISTRY BY LAURA J. DONAHUE CHICAGO, IL AUGUST 2015 Copyright by Laura J. Donahue, 2015 All rights reserved. ACKNOWLEDGMENTS I would like to acknowledge my research advisor, Dr. David Crumrine, for all of his guidance, patience, and support throughout my years of graduate work. I would also like to thank the members of my dissertation committee, Dr. James Babler, Dr. Ken Olsen, Dr. Martina Schmeling, and Dr. Stefan Kanzok for their continued guidance, support, and participation as members of my committee. I would like to thank other graduate students at Loyola who have been of assistance to me, in particular, Jeff Trautmann, Matthew Reichert, Brian Leverson, Cory Reidl, and RoJenia Jones.
    [Show full text]
  • Photosynthetic Light-Harvesting (Antenna) Complexes—Structures and Functions
    molecules Review Photosynthetic Light-Harvesting (Antenna) Complexes—Structures and Functions Heiko Lokstein 1,* , Gernot Renger 2,† and Jan P. Götze 3 1 Department of Chemical Physics and Optics, Charles University, Ke Karlovu 3, 12116 Prague, Czech Republic 2 Max-Volmer-Laboratorium, Technische Universität Berlin, Straße des 17. Juni 135, D-10623 Berlin, Germany 3 Institut für Chemie und Biochemie, Freie Universität Berlin, Arnimallee 22, D-14195 Berlin, Germany; [email protected] * Correspondence: [email protected] † Sadly, Professor Dr. Gernot Renger passed away on 12 January 2013. This article is dedicated to commemorate the outstanding contributions of Gernot Renger to oxygenic photosynthesis research. Abstract: Chlorophylls and bacteriochlorophylls, together with carotenoids, serve, noncovalently bound to specific apoproteins, as principal light-harvesting and energy-transforming pigments in photosynthetic organisms. In recent years, enormous progress has been achieved in the elucidation of structures and functions of light-harvesting (antenna) complexes, photosynthetic reaction centers and even entire photosystems. It is becoming increasingly clear that light-harvesting complexes not only serve to enlarge the absorption cross sections of the respective reaction centers but are vitally important in short- and long-term adaptation of the photosynthetic apparatus and regulation of the energy-transforming processes in response to external and internal conditions. Thus, the wide variety of structural diversity in photosynthetic antenna “designs” becomes conceivable. It is, however, common for LHCs to form trimeric (or multiples thereof) structures. We propose a simple, tentative explanation of the trimer issue, based on the 2D world created by photosynthetic membrane systems. Citation: Lokstein, H.; Renger, G.; Götze, J.P.
    [Show full text]
  • New Chlorin E6 Amide Derivatives with Fragments of 1,3-Diaminopropane
    Full Paper _____________________________________________________ Thematic Section: Preparative Research. The Reference Object Identifier – ROI: jbc-01/20-62-6-26 Subsection: Organic Chemistry. The Digital Object Identifier – DOI: 10.37952/ROI-jbc-01/20-62-6-26 Submitted on June 6, 2020. New chlorin e6 amide derivatives with fragments of 1,3-diaminopropane © Lyudmila A. Tulaeva,1+ Irina A. Morozova,1 and Dmitry V. Belykh2* 1 Department of Chemistry. Institute of Natural Sciences. Syktyvkar State University. Orktyabrsky Ave., 55. Syktyvkar, 167000. Russia. E-mail: [email protected] 2 Laboratory of Organic Synthesis and Chemistry of Natural Compounds. Institute of Chemistry, Komi Scientific Center. Ural Branch. Russian Academy of Sciences. Pervomayskaya St., 48. Syktyvkar, 167000. Russia. E-mail: [email protected] ____________________________________ + *Supervising author; Corresponding author Keywords: methylpheophorbide a, 1.3-diaminopropane, amide derivatives of chlorin e6. Abstract In this work, we studied the interaction of methylpheophorbide a with 1,3-diaminopropane and proposed a simple method for the synthesis of chlorin e6 derivatives with one, two, and three amino groups on the periphery of the macrocycle. It is shown that, when methylpheophorbide a acts on 1,3-diaminopropane in a medium of chloroform or methylene chloride, the exocycle opens chemically selectively and chlorin e6 13- amide derivative of with an amino group attached by a spacer of three methylene groups forms (chlorin e6 13- N-(3-aminopropyl)amide 15,17-dimethyl ether). By the action of 1,3-diaminopropane on chlorin e6 13-N-(3- aminopropyl)amide 15,17-dimethyl ether at room temperature without solvent, chlorin e6 13,17-N,N'-(3- aminopropyl) can be chemically selective diamide 15-methyl ether and chlorin e6 13,17-N,N',N''-(3- aminopropyl)triamide with two and three amino groups, respectively.
    [Show full text]
  • THE STUDY of ABSORPTION SPECTRA of ORGANIC COMPOUNDS at LIQUID AIR TEMPERATURES by J
    552 CHEMISTRY: CONANT AND CRAWFORD PROC. N. A. S. 2. Consideration of the absorption spectra of these two gases leads to the conclusion that the primary photochemical decomposition in nitrogen peroxide, which consists of nitrogen peroxide and nitrogen tetraoxide, is due to the tetraoxide constituent. 3. The threshold for complete photochemical equivalence is calcu- lated to be at about 3800 A. hv 4. The mechanism, N204 2N0 + 02('S), is proposed to ac- count for the primary photochemical dissociation, and the continuous absorption spectrum of N204. The energy changes involved agree closely with thermal data. 1 Norrish, J. Chem. Soc., Part 1, 761 (1927). 2 Ibid., Part 2, 1158 (1929). Dickinson and Baxter, J. Am. Chem. Soc., 50, 774 (1928). 4 Harris, Proc. Nat. Acad. Sci., 14, 690 (1928). 5 Franck, Trans. Farad. Soc., 21, 536 (1926). 6 Franck, Kuhn and Rollefson, Zeit. Phys., 43, 155 (1927). 7 Franck and Kuhn, Zeit. Phys., 43, 164 (1927). 8 Iredale and Wallace, Phil. Mag., 8, 1093 (1929). 9 Urey, Dawsey and Rice, J. Am. Chem. Soc., 51, 3190 (1929). 10 Mulliken, Phys. Rev., 32, 880 (1928). THE STUDY OF ABSORPTION SPECTRA OF ORGANIC COMPOUNDS AT LIQUID AIR TEMPERATURES By J. B. CONANT AND F. H. CRAwFoRD CONVERSE MEMORIAL LABORATORY AND THU JUFFERSON PHYSICAL LABORATORY, HARVARD UNIVERSITY Communicated July 14, 1930 It is well known that certain broad bands in the ultra-violet absorption spectrum of benzene are broken into finer lines at liquid air temperatures. At the suggestion of Professor Linus Pauling we have examined the visible absorption spectra at low temperatures of solutions of porphyrins and certain other colored organic compounds to see if the same phenomenon could be noted.
    [Show full text]
  • Total Synthesis Campaigns Toward Chlorophylls and Related Natural Hydroporphyrins – Diverse Macrocycles, Unrealized Opportunities
    Natural Product Reports Total Synthesis Campaigns Toward Chlorophylls and Related Natural Hydroporphyrins – Diverse Macrocycles, Unrealized Opportunities Journal: Natural Product Reports Manuscript ID NP-REV-03-2018-000020.R1 Article Type: Review Article Date Submitted by the Author: 02-May-2018 Complete List of Authors: Liu, Yizhou; North Carolina State University, Department of Chemistry Zhang, Shaofei; North Carolina State University, Department of Chemistry Lindsey, Jonathan; North Carolina State University, Chemistry Page 1 of 52 Natural Product Reports Total Synthesis Campaigns Toward Chlorophylls and Related Natural Hydroporphyrins – Diverse Macrocycles, Unrealized Opportunities Yizhou Liu, Shaofei Zhang and Jonathan S. Lindsey* Department of Chemistry North Carolina State University Raleigh, NC 27695-8294 TOC graphic Quantitative evaluation of reported routes toward bonellin, chlorophyll a, and tolyporphin A suggests heuristics for practical syntheses of native hydroporphyrins. 1 Natural Product Reports Page 2 of 52 Abstract Chlorophylls, bacteriochlorophylls and related hydroporphyrins constitute invaluable natural products but have largely remained outside the scope of viable syntheses. The campaign toward chlorophyll a by Woodward and coworkers is a deservedly celebrated landmark in organic synthesis yet the route entailed 49 steps, relied on semisynthetic replenishment of advanced intermediates, and then pointed to (but did not implement) uncertain literature procedures for the final transformations. Indeed, the full synthesis at any scale of any (bacterio)chlorophylls – conversion of small-molecule starting materials to the product – has never been accomplished. Herein, the reported syntheses of (±)-bonellin dimethyl ester (0.93 mg) and tolyporphin A O,O- diacetate (0.38 mg), as well as the never-fully traversed route to chlorophyll a, have been evaluated in a quantitative manner.
    [Show full text]
  • Nomenclature of Tetrapyrroles
    Pure & Appi. Chem. Vol.51, pp.2251—2304. 0033-4545/79/1101—2251 $02.00/0 Pergamon Press Ltd. 1979. Printed in Great Britain. PROVISIONAL INTERNATIONAL UNION OF PURE AND APPLIED CHEMISTRY and INTERNATIONAL UNION OF BIOCHEMISTRY JOINT COMMISSION ON BIOCHEMICAL NOMENCLATURE*t NOMENCLATURE OF TETRAPYRROLES (Recommendations, 1978) Prepared for publication by J. E. MERRITT and K. L. LOENING Comments on these proposals should be sent within 8 months of publication to the Secretary of the Commission: Dr. H. B. F. DIXON, Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge CB2 1QW, UK. Comments from the viewpoint of languages other than English are encouraged. These may have special significance regarding the eventual publication in various countries of translations of the nomenclature finally approved by IUPAC-IUB. PROVISIONAL IUPAC—ITJB Joint Commission on Biochemical Nomenclature (JCBN), NOMENCLATUREOF TETRAPYRROLES (Recommendations 1978) CONTENTS Preface 2253 Introduction 2254 TP—O General considerations 2256 TP—l Fundamental Porphyrin Systems 1.1 Porphyrin ring system 1.2 Numbering 2257 1.3 Additional fused rings 1.4 Skeletal replacement 2258 1.5 Skeletal replacement of nitrogen atoms 2259 1.6Fused porphyrin replacement analogs 2260 1.7Systematic names for substituted porphyrins 2261 TP—2 Trivial names and locants for certain substituted porphyrins 2263 2.1 Trivial names and locants 2.2 Roman numeral type notation 2265 TP—3 Semisystematic porphyrin names 2266 3.1 Semisystematic names in substituted porphyrins 3.2 Subtractive nomenclature 2269 3.3 Combinations of substitutive and subtractive operations 3.4 Additional ring formation 2270 3.5 Skeletal replacement of substituted porphyrins 2271 TP—4 Reduced porphyrins including chlorins 4.1 Unsubstituted reduced porphyrins 4.2 Substituted reduced porphyrins.
    [Show full text]