Variability of Deep Chlorophyll Maximum Characteristics in the Northwestern Mediterranean
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Selph Et Al-2021.Pdf
Journal of Plankton Research academic.oup.com/plankt Downloaded from https://academic.oup.com/plankt/advance-article/doi/10.1093/plankt/fbab006/6161505 by Florida State University Law Library user on 10 March 2021 J. Plankton Res. (2021) 1–20. doi:10.1093/plankt/fbab006 BLOOFINZ - Gulf of Mexico Phytoplankton community composition and biomass in the oligotrophic Gulf of Mexico KAREN E. SELPH1,*, RASMUS SWALETHORP2, MICHAEL R. STUKEL3,THOMASB.KELLY3, ANGELA N. KNAPP3, KELSEY FLEMING2, TABITHA HERNANDEZ2 AND MICHAEL R. LANDRY2 1department of oceanography, university of hawaii at manoa, 1000 pope road, honolulu, hi 96822, usa, 2scripps institution of oceanography, 9500 gilman drive, la jolla, ca 92093-0227, usa and 3department of earth, ocean and atmospheric science, florida state university, tallahassee, fl 32306, usa *corresponding author: [email protected] Received October 13, 2020; editorial decision January 10, 2021; accepted January 10, 2021 Corresponding editor: Lisa Campbell Biomass and composition of the phytoplankton community were investigated in the deep-water Gulf of Mexico (GoM) at the edges of Loop Current anticyclonic eddies during May 2017 and May 2018. Using flow cytometry, high-performance liquid chromatography pigments and microscopy, we found euphotic zone integrated chlorophyll aof ∼10 mg m−2 and autotrophic carbon ranging from 463 to 1268 mg m−2, dominated by picoplankton (<2μm cells). Phytoplankton assemblages were similar to the mean composition at the Bermuda Atlantic Time-series Study site, but differed from the Hawaii Ocean Times-series site. GoM phytoplankton biomass was ∼2-fold higher at the deep chlorophyll maximum (DCM) relative to the mixed layer (ML). Prochlorococcus and prymnesiophytes were the dominant taxa throughout the euphotic zone; however, other eukaryotic taxa had significant biomass in the DCM. -
1.1-Billion-Year-Old Porphyrins Establish a Marine Ecosystem Dominated by Bacterial Primary Producers
1.1-billion-year-old porphyrins establish a marine ecosystem dominated by bacterial primary producers N. Guenelia,1, A. M. McKennab, N. Ohkouchic, C. J. Borehamd, J. Beghine, E. J. Javauxe, and J. J. Brocksa,1 aResearch School of Earth Sciences, Australian National University, Canberra, ACT 2601, Australia; bNational High Magnetic Field Laboratory, Florida State University, Tallahassee, FL 32310-4005; cDepartment of Biogeochemistry, Japan Agency for Marine–Earth Science and Technology, 237-0061 Kanagawa Prefecture, Yokosuka, Natsushimacho, Japan; dGeoscience Australia, Symonston, ACT 2609, Australia; and eDepartment of Geology, Unité de Recherche Geology, University of Liège, 4000 Liege, Belgium Edited by Andrew H. Knoll, Harvard University, Cambridge, MA, and approved June 8, 2018 (received for review March 6, 2018) The average cell size of marine phytoplankton is critical for the the molecular fossils of biological lipids, can provide comple- flow of energy and nutrients from the base of the food web to mentary information about primary producers. For example, higher trophic levels. Thus, the evolutionary succession of primary hydrocarbon fossils of carotenoid pigments extracted from sed- producers through Earth’s history is important for our understand- imentary rocks have been used to detect phototrophic green ing of the radiation of modern protists ∼800 million years ago and (Chlorobiaceae) and purple sulfur bacteria (PSB) (Chromatia- ∼ the emergence of eumetazoan animals 200 million years later. ceae) in 1,640-My-old marine ecosystems (4, 5), while the con- Currently, it is difficult to establish connections between primary centration of eukaryotic steranes, relative to bacterial hopanes, production and the proliferation of large and complex organisms may provide basic information about the ecological relevance of because the mid-Proterozoic (∼1,800–800 million years ago) rock Precambrian algae (6). -
Phototrophic Pigment Production with Microalgae
Phototrophic pigment production with microalgae Kim J. M. Mulders Thesis committee Promotor Prof. Dr R.H. Wijffels Professor of Bioprocess Engineering Wageningen University Co-promotors Dr D.E. Martens Assistant professor, Bioprocess Engineering Group Wageningen University Dr P.P. Lamers Assistant professor, Bioprocess Engineering Group Wageningen University Other members Prof. Dr H. van Amerongen, Wageningen University Prof. Dr M.J.E.C. van der Maarel, University of Groningen Prof. Dr C. Vilchez Lobato, University of Huelva, Spain Dr S. Verseck, BASF Personal Care and Nutrition GmbH, Düsseldorf, Germany This research was conducted under the auspices of the Graduate School VLAG (Advanced studies in Food Technology, Agrobiotechnology, Nutrition and Health Sciences). Phototrophic pigment production with microalgae Kim J. M. Mulders Thesis submitted in fulfilment of the requirement for the degree of doctor at Wageningen University by the authority of the Rector Magnificus Prof. Dr M.J. Kropff, in the presence of the Thesis Committee appointed by the Academic Board to be defended in public on Friday 5 December 2014 at 11 p.m. in the Aula. K. J. M. Mulders Phototrophic pigment production with microalgae, 192 pages. PhD thesis, Wageningen University, Wageningen, NL (2014) With propositions, references and summaries in Dutch and English ISBN 978-94-6257-145-7 Abstract Microalgal pigments are regarded as natural alternatives for food colourants. To facilitate optimization of microalgae-based pigment production, this thesis aimed to obtain key insights in the pigment metabolism of phototrophic microalgae, with the main focus on secondary carotenoids. Different microalgal groups each possess their own set of primary pigments. Besides, a selected group of green algae (Chlorophytes) accumulate secondary pigments (secondary carotenoids) when exposed to oversaturating light conditions. -
Modifications of Protoporphyrin IX Fluorescence During ALA-Based
ARTICLE IN PRESS Medical Laser Application 21 (2006) 291–297 www.elsevier.de/mla Modifications of protoporphyrin IX fluorescence during ALA-based photodynamic therapy of endometriosis Karsten Ko¨niga,Ã, Marie-Therese Wyss-Desserichb, Yona Tadirc, Urs Hallerb, Bruce Trombergc, Michael W. Bernsc, P. Wyssb aFraunhofer Institute of Biomedical Technology (IBMT), Ensheimer Straße 48, 66386 St. Ingbert, Germany bDepartment of Obstetrics and Gynecology, Clinic of Gynecology, Frauenklinikstr. 10, University Hospital Zu¨rich, 8091 Zu¨rich, Switzerland cBeckman Laser Institute and Medical Clinic, University of California, 1002 Health Sciences Road Irvine, Irvine, CA 92612, USA Received 20 June 2006; accepted 31 July 2006 Abstract Modifications of the porphyrin fluorescence during photodynamic treatment of ovarian cells, endometrial adenocarcinoma cells and rat uterus after administration of the porphyrin precursor d-aminolevulinic acid and exposure with 630 nm laser radiation have been studied. The intracellular and intratissue fluorescence was excited with 407 nm radiation of a krypton ion laser and detected by spectral microscopic imaging using a modified microscope equipped with a slow-scan cooled camera and a liquid crystal filter. In particular, singlet oxygen induced effects due to photobleaching as well as formation of chlorin-type fluorescent photoproducts were detected at around 500, 630 and 670 nm. The photodynamically induced fluorescence modifications were found to vary between cell types. The major fluorescence peak of PP IX was photobleached 63% by a phototoxic fluence of about 20–40 J/cm2 in cells and within rat endometrium. Higher fluences were required to bleach the fluorescence at around 670 nm due to the formation of fluorescent photoproducts. -
I Topic - Algal Pigments and Algal Classification(ALGAE) Prepared by –Prof.(Dr.)Jainendra Kumar Coordinated By: Prof.(Dr) Shyam Nandan Prasad
Course- M.Sc. Botany Part -I Paper -I Topic - Algal Pigments and algal Classification(ALGAE) Prepared by –Prof.(Dr.)Jainendra Kumar Coordinated by: Prof.(Dr) Shyam Nandan Prasad The algae were broadly divided by F.F.Fritsch (1935) into eleven classes according to their colour - 1. Chlorophyceae or green algae 2. Xanthophyceae or yellow-green algae 3. Chrysophyceae 4. Bacillariophyceae or golden-brown algae 5. Cryptophyceae 6. Dinophyceae 7. Chloromonadineae 8. Eugleninae 9. Phaeophyceae or brown algae 10. Rhodophyceae or red algae, and 11. Myxophyceae or blue-green algae Normally, classification of algae is based on - 1. Nuclear Organization 2. Nature of Cell Wall Components 3. Pigmentation and Photosynthetic Apparatus The pigment is one of the most important criteria used in differentiation of classes in algae. The pigments in algae can be chlorophylls, carotenoids and biloproteins. These pigments are present in sac like structures called thylakoids. The thylakoids are arranged in stacks in the granum of the chloroplasts. Different groups of algae have different types of pigments and organization of thylakoids in chloroplast. The chlorophylls in algae are chlorophyll a, b, c, d and e types. Chlorophyll a is present in all classes of algae. Chlorophyll b is primary pigment of Chlorophyceae and Euglenineae. Chlorophyll c is found in Phaeophyceae and Cryptophyceae. Chlorophyll d is found in Rhodophyceae. Chlorophyll e is confined to Tribonema of Xanthophyceae. Pigments are chemical compounds which reflect only certain wavelengths of visible light. This makes them appear colourful. More important than their reflection of light is the ability of pigments to absorb certain wavelengths. Since each pigment reacts with only a narrow range of the spectrum, it is important for algae to produce pigments of different colours to capture more of the sun's energy. -
Factors Controlling the Community Structure of Picoplankton in Contrasting Marine Environments
Biogeosciences, 15, 6199–6220, 2018 https://doi.org/10.5194/bg-15-6199-2018 © Author(s) 2018. This work is distributed under the Creative Commons Attribution 4.0 License. Factors controlling the community structure of picoplankton in contrasting marine environments Jose Luis Otero-Ferrer1, Pedro Cermeño2, Antonio Bode6, Bieito Fernández-Castro1,3, Josep M. Gasol2,5, Xosé Anxelu G. Morán4, Emilio Marañon1, Victor Moreira-Coello1, Marta M. Varela6, Marina Villamaña1, and Beatriz Mouriño-Carballido1 1Departamento de Ecoloxía e Bioloxía Animal, Universidade de Vigo, Vigo, Spain 2Institut de Ciències del Mar, Consejo Superior de Investigaciones Científicas, Barcelona, Spain 3Departamento de Oceanografía, Instituto de investigacións Mariñas (IIM-CSIC), Vigo, Spain 4King Abdullah University of Science and Technology (KAUST), Read Sea Research Center, Biological and Environmental Sciences and Engineering Division, Thuwal, Saudi Arabia 5Centre for Marine Ecosystem Research, School of Sciences, Edith Cowan University, WA, Perth, Australia 6Centro Oceanográfico de A Coruña, Instituto Español de Oceanografía (IEO), A Coruña, Spain Correspondence: Jose Luis Otero-Ferrer ([email protected]) Received: 27 April 2018 – Discussion started: 4 June 2018 Revised: 4 October 2018 – Accepted: 10 October 2018 – Published: 26 October 2018 Abstract. The effect of inorganic nutrients on planktonic as- played a significant role. Nitrate supply was the only fac- semblages has traditionally relied on concentrations rather tor that allowed the distinction among the ecological -
Subsurface Chlorophyll Maximum in August-September 1985 in the CLIMAX Area of the North Pacific
W&M ScholarWorks VIMS Articles 1988 Subsurface chlorophyll maximum in August-September 1985 in the CLIMAX area of the North Pacific RW Eppley E Swift DG Redalje MR Landry LW Haas Virginia Institute of Marine Science Follow this and additional works at: https://scholarworks.wm.edu/vimsarticles Part of the Marine Biology Commons Recommended Citation Eppley, RW; Swift, E; Redalje, DG; Landry, MR; and Haas, LW, "Subsurface chlorophyll maximum in August- September 1985 in the CLIMAX area of the North Pacific" (1988). VIMS Articles. 226. https://scholarworks.wm.edu/vimsarticles/226 This Article is brought to you for free and open access by W&M ScholarWorks. It has been accepted for inclusion in VIMS Articles by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. MARINE ECOLOGY - PROGRESS SERIES Vol. 42: 289301, 1988 Published February 24 Mar. Ecol. Prog. Ser. Subsurface chlorophyll maximum in August-September 1985 in the CLIMAX area of the North Pacific ' Institute of Marine Resources, A-018, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, California 92093, USA Narragansett Marine Laboratory, University of Rhode Island, Kingston. Rhode Island 02881, USA Center for Marine Science, University of Southern Mississippi, National Space Technology Laboratories, NSTL, Mississippi 39529, USA Department of Oceanography, WB-10, University of Washington, Seattle, Washington 98195, USA Virginia Institute of Marine Science, College of William and Mary, Gloucester Point, -
Deep Maxima of Phytoplankton Biomass, Primary Production and Bacterial Production in the Mediterranean Sea
Biogeosciences, 18, 1749–1767, 2021 https://doi.org/10.5194/bg-18-1749-2021 © Author(s) 2021. This work is distributed under the Creative Commons Attribution 4.0 License. Deep maxima of phytoplankton biomass, primary production and bacterial production in the Mediterranean Sea Emilio Marañón1, France Van Wambeke2, Julia Uitz3, Emmanuel S. Boss4, Céline Dimier3, Julie Dinasquet5, Anja Engel6, Nils Haëntjens4, María Pérez-Lorenzo1, Vincent Taillandier3, and Birthe Zäncker6,7 1Department of Ecology and Animal Biology, Universidade de Vigo, 36310 Vigo, Spain 2Mediterranean Institute of Oceanography, Aix-Marseille Université, CNRS, Université de Toulon, CNRS, IRD, MIO UM 110, 13288 Marseille, France 3Laboratoire d’Océanographie de Villefranche, Sorbonne Université, CNRS, 06230 Villefranche-sur-Mer, France 4School of Marine Sciences, University of Maine, Orono, Maine, USA 5Scripps Institution of Oceanography, University of California, San Diego, San Diego, California, USA 6GEOMAR, Helmholtz Centre for Ocean Research Kiel, 24105 Kiel, Germany 7The Marine Biological Association of the United Kingdom, Plymouth, PL1 2PB, United Kingdom Correspondence: Emilio Marañón ([email protected]) Received: 7 July 2020 – Discussion started: 20 July 2020 Revised: 5 December 2020 – Accepted: 8 February 2021 – Published: 15 March 2021 Abstract. The deep chlorophyll maximum (DCM) is a ubiq- 10–15 mgCm−3 at the DCM. As a result of photoacclima- uitous feature of phytoplankton vertical distribution in strati- tion, there was an uncoupling between chlorophyll a-specific fied waters that is relevant to our understanding of the mech- and carbon-specific productivity across the euphotic layer. anisms that underpin the variability in photoautotroph eco- The ratio of fucoxanthin to total chlorophyll a increased physiology across environmental gradients and has impli- markedly with depth, suggesting an increased contribution cations for remote sensing of aquatic productivity. -
ABSTRACT ZHANG, SHAOFEI. Synthesis Of
ABSTRACT ZHANG, SHAOFEI. Synthesis of Bacteriochlorins and the Full Skeleton of Bacteriochlorophylls. (Under the direction of Professor Jonathan S. Lindsey.) Bacteriochlorins, the core macrocycle ring of natural bacteriochlorophylls, are characterized by their ability to absorb near infrared light (700 – 900 nm), which makes them attractive candidates in variety of photophysical studies and applications. The previously established de novo synthesis, which relies on the acid-catalyzed self-condensation of dihydrodipyrrin–acetal, provides access towards diverse bacteriochlorins, but has its limitations. This dissertation describes the development of new strategies for bacteriochlorin synthesis. Firstly, a route towards previously unknown tetra-alkyl bacteriochlorins (e.g., alkyl = Me, or –CH2CO2Me) is established (Ch. 2). Secondly, explorations of synthetic approaches to unsymmetrically substituted bacteriochlorins through electrocyclic reactions of linear tetrapyrrole intermediates are described. Four new unsymmetrically substituted bacteriochlorins and one new tetradehydrocorrin were produced, albeit in low yields (Ch. 3). Thirdly, a new method to construct bacteriochlorin macrocycle with concomitant Nazarov cyclization to form the annulated isocyclic ring, is established. Five new bacteriochlorins, which are closely anlogues of bacteriochlorophyll a, bearing various substituents (alkyl/alkyl, aryl, and alkyl/ester) at positions 2 and 3 and 132 carboalkoxy groups (R = Me or Et) were constructed in 37−61% yield from the bilin analogues -
The Ecological Importance of Deep Chlorophyll Maxima in The
THE ECOLOGICAL IMPORTANCE OF DEEP CHLOROPHYLL MAXIMA IN THE LAURENTIAN GREAT LAKES A Dissertation Presented to the Faculty of the Graduate School of Cornell University In Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy by Anne Scofield August 2018 © 2018 Anne Scofield THE ECOLOGICAL IMPORTANCE OF DEEP CHLOROPHYLL MAXIMA IN THE LAURENTIAN GREAT LAKES Anne Scofield, Ph. D. Cornell University 2018 Deep chlorophyll maxima (DCM) are common in stratified lakes and oceans, and phytoplankton growth in DCM can contribute significantly to total ecosystem production. Understanding the drivers of DCM formation is important for interpreting their ecological importance. The overall objective of this research was to assess the food web implications of DCM across a productivity gradient, using the Laurentian Great Lakes as a case study. First, I investigated the driving mechanisms of DCM formation and dissipation in Lake Ontario during April–September 2013 using in situ profile data and phytoplankton community structure. Results indicate that in situ growth was important for DCM formation in early- to mid-summer but settling and photoadaptation contributed to maintenance of the DCM late in the stratified season. Second, I expanded my analysis to all five of the Great Lakes using a time series generated by the US Environmental Protection Agency (EPA) long-term monitoring program in August from 1996-2017. The cross-lake comparison showed that DCM were closely aligned with deep biomass maxima (DBM) and dissolved oxygen saturation maxima (DOmax) in meso-oligotrophic waters (eastern Lake Erie and Lake Ontario), suggesting that DCM are productive features. In oligotrophic to ultra-oligotrophic waters (Lakes Michigan, Huron, Superior), however, DCM were deeper than the DBM and DOmax, indicating that photoadaptation was of considerable importance. -
A Baseline Study of the Oceanography of the Chagos Archipelago
A Baseline Study of the Oceanography of the Chagos Archipelago Lewis Fasolo Honours Dissertation 1 ACKNOWLEDGEMENTS I would firstly like to acknowledge my supervisor Anya Waite for her wealth of knowledge that she so openly shared, and our consistent meetings that left me with a strong sense of direction. She went above and beyond, and was never out of reach. I would also like to thank my co-supervisor Jessica Meeuwig for her guidance, support and leadership during the three-week voyage through the Chagos Archipelago. Although her plate was full, she always made time to assist me. I was very impressed with her role as Research voyage leader. My thanks also go out to the crew and fellow scientists on board the Pacific Marlin for all their assistance. I was so fortunate to be a part of this unique voyage with a great group of people all wanting to achieve a common goal. It was an experience I will treasure and never forget. 2 ABSTRACT The Chagos Archipelago is a chain of islands, atolls, seamounts and shallow banks situated in the geographical centre of the tropical Indian Ocean, covering some 640,000km2. The region supports one of the healthiest marine ecosystems in the cleanest waters in the world. Investigating the oceanographic conditions within this no- take marine reserve will contribute to our global understanding of how the oceanic environment drives biodiversity in pristine tropical regions. This paper explores the first ever localised oceanography associated with shallow seamounts in the Chagos region. Over a three-week voyage, CTD casts and water samples to quantify chlorophyll-a values were conducted over high and low resolution transects throughout the archipelago to characterize vertical profiles regionally and across individual seamounts. -
A Primitive Pathway of Porphyrin Biosynthesis and Enzymology in Desulfovibrio Vulgaris
Proc. Natl. Acad. Sci. USA Vol. 95, pp. 4853–4858, April 1998 Biochemistry A primitive pathway of porphyrin biosynthesis and enzymology in Desulfovibrio vulgaris TETSUO ISHIDA*, LING YU*, HIDEO AKUTSU†,KIYOSHI OZAWA†,SHOSUKE KAWANISHI‡,AKIRA SETO§, i TOSHIRO INUBUSHI¶, AND SEIYO SANO* Departments of *Biochemistry and §Microbiology and ¶Division of Biophysics, Molecular Neurobiology Research Center, Shiga University of Medical Science, Seta, Ohtsu, Shiga 520-21, Japan; †Department of Bioengineering, Faculty of Engineering, Yokohama National University, 156 Tokiwadai, Hodogaya-ku, Yokohama 240, Japan; and ‡Department of Public Health, Graduate School of Medicine, Kyoto University, Sakyou-ku, Kyoto 606, Japan Communicated by Rudi Schmid, University of California, San Francisco, CA, February 23, 1998 (received for review March 15, 1998) ABSTRACT Culture of Desulfovibrio vulgaris in a medium billion years ago (3). Therefore, it is important to establish the supplemented with 5-aminolevulinic acid and L-methionine- biosynthetic pathway of porphyrins in D. vulgaris, not only methyl-d3 resulted in the formation of porphyrins (sirohydro- from the biochemical point of view, but also from the view- chlorin, coproporphyrin III, and protoporphyrin IX) in which point of molecular evolution. In this paper, we describe a the methyl groups at the C-2 and C-7 positions were deuter- sequence of intermediates in the conversion of uroporphy- ated. A previously unknown hexacarboxylic acid was also rinogen III to coproporphyrinogen III and their stepwise isolated, and its structure was determined to be 12,18- enzymic conversion. didecarboxysirohydrochlorin by mass spectrometry and 1H NMR. These results indicate a primitive pathway of heme biosynthesis in D. vulgaris consisting of the following enzy- MATERIALS AND METHODS matic steps: (i) methylation of the C-2 and C-7 positions of Materials.